TCONS_00030520 (transcript) - C. hemisphaerica

Overview
NameTCONS_00030520
Unique NameTCONS_00030520
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length213

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00030520 ID=TCONS_00030520|Name=TCONS_00030520|organism=Clytia hemisphaerica|type=transcript|length=213bp
gAGAGCTTTTACAGTAAGGTTGTGAAGAGAACTTTCATAtcaattttact
attttgcATGTTGGTTGAGTGTTGAGATTTCACTCAGacttttcagtcat
tttcatgTGTTTAACCCAGTTGGTTATACACAACCTGGTCACTCATCACA
GTGATTCACATTGGGCCAGCCGGTAAGCTTTTGtccttttctgttttctt
ttgtgGACTTCAG
Run BLAST on NCBI

transcript from alignment at sc0000825:45593..45805

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00030520 ID=TCONS_00030520|Name=TCONS_00030520|organism=Clytia hemisphaerica|type=transcript|length=213bp|location=Sequence derived from alignment at sc0000825:45593..45805 (Clytia hemisphaerica)
CTGAAGTCcacaaaagaaaacagaaaaggaCAAAAGCTTACCGGCTGGCC
CAATGTGAATCACTGTGATGAGTGACCAGGTTGTGTATAACCAACTGGGT
TAAACAcatgaaaatgactgaaaagtCTGAGTGAAATCTCAACACTCAAC
CAACATgcaaaatagtaaaattgaTATGAAAGTTCTCTTCACAACCTTAC
TGTAAAAGCTCTc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_017501XLOC_017501Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00030520-exon-sc0000825-1491911889:45593..45805TCONS_00030520-exon-sc0000825-1491911889:45593..45805Clytia hemisphaericaexon
TCONS_00030520-exon-sc0000825-1510915933:45593..45805TCONS_00030520-exon-sc0000825-1510915933:45593..45805Clytia hemisphaericaexon
TCONS_00030520-exon-sc0000825-1575043694:45593..45805TCONS_00030520-exon-sc0000825-1575043694:45593..45805Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000825supercontigsc0000825:45593..45805 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.37753	2.68661	1.5597	0	5.57301	2.93591	0	3.31603	0	4.31357	2.79124	2.75227	4.58074	0	0.782204	0	0	0	1.46434	1.53233	0	1.94892	0	1.43594	0	2.63992	3.77772	2.01584	1.52895	1.55775
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00030520 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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