TCONS_00030519 (transcript) - C. hemisphaerica

Overview
NameTCONS_00030519
Unique NameTCONS_00030519
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length526

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00030519 ID=TCONS_00030519|Name=TCONS_00030519|organism=Clytia hemisphaerica|type=transcript|length=526bp
CTTCAATTCaatttagtcaaaattttcatcaaaatttatagatttcaaat
ttcaatttttaaactagattgtattttcaatttctaGTTTGAACGTATTC
GAAAAAGATCGTTACAAACATACGCCTTGGCGAATCCCGCTAACACCCGG
TGTACAGGTACAGACCTGTAAGCACGACGAAGGTCAACTTTGGCAATAAA
ATAGTCCTTCCCTATCAGCTTGGTGGCATCACTTAGGGATTGAAAGGACT
GCTTTTCAACAGAAATGTAGGAGTTAACTCCTTTGCCCGGAGGCATTGAA
CAGCCATGAATAATGCGAATGTCATCAGAATCTGGCTTTGGAACAGCTCC
AAGTGCACTGACAATTGATGGATTAGAATTAACAGCAACATAATTACCGG
CCACAATCTCCTCGAGGATAGCTTTGTCAACTTTCTCTTTAAAGGTTGGA
CCGGTGGCAGAAGAATAGTTCTCCATCTCCGCTGGAGTGATAGAAGAATC
TGAGGGCAAGAGCTGAAATCCGTTTT
Run BLAST on NCBI

protein sequence of TCONS_00030519-protein

>TCONS_00030519-protein ID=TCONS_00030519-protein|Name=TCONS_00030519-protein|organism=Clytia hemisphaerica|type=polypeptide|length=146bp
NGFQLLPSDSSITPAEMENYSSATGPTFKEKVDKAILEEIVAGNYVAVNS
NPSIVSALGAVPKPDSDDIRIIHGCSMPPGKGVNSYISVEKQSFQSLSDA
TKLIGKDYFIAKVDLRRAYRSVPVHRVLAGFAKAYVCNDLFRIRSN
Run BLAST on NCBI

transcript from alignment at sc0000825:29955..30480

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00030519 ID=TCONS_00030519|Name=TCONS_00030519|organism=Clytia hemisphaerica|type=transcript|length=526bp|location=Sequence derived from alignment at sc0000825:29955..30480 (Clytia hemisphaerica)
AAAACGGATTTCAGCTCTTGCCCTCAGATTCTTCTATCACTCCAGCGGAG
ATGGAGAACTATTCTTCTGCCACCGGTCCAACCTTTAAAGAGAAAGTTGA
CAAAGCTATCCTCGAGGAGATTGTGGCCGGTAATTATGTTGCTGTTAATT
CTAATCCATCAATTGTCAGTGCACTTGGAGCTGTTCCAAAGCCAGATTCT
GATGACATTCGCATTATTCATGGCTGTTCAATGCCTCCGGGCAAAGGAGT
TAACTCCTACATTTCTGTTGAAAAGCAGTCCTTTCAATCCCTAAGTGATG
CCACCAAGCTGATAGGGAAGGACTATTTTATTGCCAAAGTTGACCTTCGT
CGTGCTTACAGGTCTGTACCTGTACACCGGGTGTTAGCGGGATTCGCCAA
GGCGTATGTTTGTAACGATCTTTTTCGAATACGTTCAAACtagaaattga
aaatacaatctagtttaaaaattgaaatttgaaatctataaattttgatg
aaaattttgactaaattGAATTGAAG

Coding sequence (CDS) from alignment at sc0000825:29955..30480

>TCONS_00030519 ID=TCONS_00030519|Name=TCONS_00030519|organism=Clytia hemisphaerica|type=CDS|length=441bp|location=Sequence derived from alignment at sc0000825:29955..30480 (Clytia hemisphaerica)
AACGGATTTCAGCTCTTGCCCTCAGATTCTTCTATCACTCCAGCGGAGAT
GGAGAACTATTCTTCTGCCACCGGTCCAACCTTTAAAGAGAAAGTTGACA
AAGCTATCCTCGAGGAGATTGTGGCCGGTAATTATGTTGCTGTTAATTCT
AATCCATCAATTGTCAGTGCACTTGGAGCTGTTCCAAAGCCAGATTCTGA
TGACATTCGCATTATTCATGGCTGTTCAATGCCTCCGGGCAAAGGAGTTA
ACTCCTACATTTCTGTTGAAAAGCAGTCCTTTCAATCCCTAAGTGATGCC
ACCAAGCTGATAGGGAAGGACTATTTTATTGCCAAAGTTGACCTTCGTCG
TGCTTACAGGTCTGTACCTGTACACCGGGTGTTAGCGGGATTCGCCAAGG
CGTATGTTTGTAACGATCTTTTTCGAATACGTTCAAACtag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_017500XLOC_017500Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00030519-proteinTCONS_00030519-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00030519-exon-sc0000825-1491911889:29955..30480TCONS_00030519-exon-sc0000825-1491911889:29955..30480Clytia hemisphaericaexon
TCONS_00030519-exon-sc0000825-1510915933:29955..30480TCONS_00030519-exon-sc0000825-1510915933:29955..30480Clytia hemisphaericaexon
TCONS_00030519-exon-sc0000825-1575043694:29955..30480TCONS_00030519-exon-sc0000825-1575043694:29955..30480Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000825supercontigsc0000825:29955..30480 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.524599	0.435395	0	0.299797	0.309734	0.266972	0.143887	0.136436	0	0	0.236718	0.260109	0	0.703663	0.069288	0.240353	0	0.30288	0	0	0.311491	0.696919	0	0.151434	0.255634	0	0.20142	0	0	0.154286
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00030519 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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