TCONS_00030518 (transcript) - C. hemisphaerica

Overview
NameTCONS_00030518
Unique NameTCONS_00030518
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length380

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00030518 ID=TCONS_00030518|Name=TCONS_00030518|organism=Clytia hemisphaerica|type=transcript|length=380bp
GTAGTAAGCGATGACCGATTCATCAGAGAGTGCTGATTTTAGTTGATCGA
AGGCTTTCTGCTGCTCTGTTCCCCAGTTGAATGTGCATTTCTTCCGTGTT
AAGCGTCGCAGAGGTTCTGTGATTGTAGCATAATTTGGGATGAAACGACT
GCAGAAGTTTGTAAGTCCAAGAAACGATCTGACTTCTGTGGCATTTGCTG
GACGCTGGATGGCTTTGATGGCTTCAATCTTTGGTCGTTCAGGTGAGATG
CCGGCTGCTGATAAACGATGTCCAGCGAAAACAAGGGATTCAACGCTGAA
GATGCATTTGTCTTTGTTCAGCTTGAGGTTACGGTTGTTAAGTCTTGTGA
GGGCTTCATCAAGGTTTTTGTCATGGTCCT
Run BLAST on NCBI

protein sequence of TCONS_00030518-protein

>TCONS_00030518-protein ID=TCONS_00030518-protein|Name=TCONS_00030518-protein|organism=Clytia hemisphaerica|type=polypeptide|length=126bp
DHDKNLDEALTRLNNRNLKLNKDKCIFSVESLVFAGHRLSAAGISPERPK
IEAIKAIQRPANATEVRSFLGLTNFCSRFIPNYATITEPLRRLTRKKCTF
NWGTEQQKAFDQLKSALSDESVIAYY
Run BLAST on NCBI

transcript from alignment at sc0000825:24645..25024

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00030518 ID=TCONS_00030518|Name=TCONS_00030518|organism=Clytia hemisphaerica|type=transcript|length=380bp|location=Sequence derived from alignment at sc0000825:24645..25024 (Clytia hemisphaerica)
AGGACCATGACAAAAACCTTGATGAAGCCCTCACAAGACTTAACAACCGT
AACCTCAAGCTGAACAAAGACAAATGCATCTTCAGCGTTGAATCCCTTGT
TTTCGCTGGACATCGTTTATCAGCAGCCGGCATCTCACCTGAACGACCAA
AGATTGAAGCCATCAAAGCCATCCAGCGTCCAGCAAATGCCACAGAAGTC
AGATCGTTTCTTGGACTTACAAACTTCTGCAGTCGTTTCATCCCAAATTA
TGCTACAATCACAGAACCTCTGCGACGCTTAACACGGAAGAAATGCACAT
TCAACTGGGGAACAGAGCAGCAGAAAGCCTTCGATCAACTAAAATCAGCA
CTCTCTGATGAATCGGTCATCGCTTACTAC

Coding sequence (CDS) from alignment at sc0000825:24645..25024

>TCONS_00030518 ID=TCONS_00030518|Name=TCONS_00030518|organism=Clytia hemisphaerica|type=CDS|length=378bp|location=Sequence derived from alignment at sc0000825:24645..25024 (Clytia hemisphaerica)
GACCATGACAAAAACCTTGATGAAGCCCTCACAAGACTTAACAACCGTAA
CCTCAAGCTGAACAAAGACAAATGCATCTTCAGCGTTGAATCCCTTGTTT
TCGCTGGACATCGTTTATCAGCAGCCGGCATCTCACCTGAACGACCAAAG
ATTGAAGCCATCAAAGCCATCCAGCGTCCAGCAAATGCCACAGAAGTCAG
ATCGTTTCTTGGACTTACAAACTTCTGCAGTCGTTTCATCCCAAATTATG
CTACAATCACAGAACCTCTGCGACGCTTAACACGGAAGAAATGCACATTC
AACTGGGGAACAGAGCAGCAGAAAGCCTTCGATCAACTAAAATCAGCACT
CTCTGATGAATCGGTCATCGCTTACTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_017499XLOC_017499Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00030518-exon-sc0000825-1491911889:24645..25024TCONS_00030518-exon-sc0000825-1491911889:24645..25024Clytia hemisphaericaexon
TCONS_00030518-exon-sc0000825-1510915933:24645..25024TCONS_00030518-exon-sc0000825-1510915933:24645..25024Clytia hemisphaericaexon
TCONS_00030518-exon-sc0000825-1575043694:24645..25024TCONS_00030518-exon-sc0000825-1575043694:24645..25024Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00030518-proteinTCONS_00030518-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000825supercontigsc0000825:24645..25024 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.414944	0.404636	0.863286	0.229823	1.11915	0.663276	0.670814	1.12626	0.174833	1.08279	0.210197	0.690877	4.59382	1.43533	0.471238	0.379283	0	0.943411	2.64657	3.53594	0.200596	0	0.18216	0.216271	1.11377	0.71671	0	0	0.230278	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00030518 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top