TCONS_00030516 (transcript) - C. hemisphaerica

Overview
NameTCONS_00030516
Unique NameTCONS_00030516
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length725

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00030516 ID=TCONS_00030516|Name=TCONS_00030516|organism=Clytia hemisphaerica|type=transcript|length=725bp
atcagtgaattctgattggttctctacctgtccaatatttttgaatattg
gTCAACCTCGACGCTACATATTTAGCAGCGCAGGGCCTTCTTTTTGACGG
ATAAATTTGATTGGCCAAAAATGACGCGTCTGTGTTCTGATTGGATGATG
AAACCATTGGaaacgaaaaacaaaaacaaactgtaaaatcaaaatcagtc
aaaaattcAAACAGAAAGGACGACAGAACAGAGATGGCAGacctaaaaaa
attcaatttcaatacTGGAATATCCAGTAATGGAAGTAGATTTGCTGAAT
TAACTGATCAACAAATAGAGACGATGATGGAGAAGAAAAACGCGAAGAAT
ACGGACCAAAACACTTCTTACGCAGTGAGAATTCTAGAAGCTTTTTGTAA
GCATGCAAAGACCAGCTACAAGGGCATCACCTCGTCAGAACTTGATAAAT
TGTTGAGCAAACTTTACGTGTCTGCAAGAACAGCAAAAGGTGACCTTTAC
AAGCTGAACTCGATGAAGGCTATTCGATCTGGACTACAAAGACACTTTAT
CAGAATTCTTAATGTTGACATTATAACTGATGAGACTTTCAGGATGTCAA
ATTTATGCTTCGAAAACGTTTTGAAGCAactgaaattcaatggaaaagga
GAAACAGAACATTACCCCGAAATCGAGCCTGAAGATCTCCAGAAACTCTA
CTCGTCATTCGATTTGTCAGCACCA
Run BLAST on NCBI

protein sequence of TCONS_00030516-protein

>TCONS_00030516-protein ID=TCONS_00030516-protein|Name=TCONS_00030516-protein|organism=Clytia hemisphaerica|type=polypeptide|length=164bp
MADLKKFNFNTGISSNGSRFAELTDQQIETMMEKKNAKNTDQNTSYAVRI
LEAFCKHAKTSYKGITSSELDKLLSKLYVSARTAKGDLYKLNSMKAIRSG
LQRHFIRILNVDIITDETFRMSNLCFENVLKQLKFNGKGETEHYPEIEPE
DLQKLYSSFDLSAP
Run BLAST on NCBI

transcript from alignment at sc0000825:20541..21265

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00030516 ID=TCONS_00030516|Name=TCONS_00030516|organism=Clytia hemisphaerica|type=transcript|length=725bp|location=Sequence derived from alignment at sc0000825:20541..21265 (Clytia hemisphaerica)
TGGTGCTGACAAATCGAATGACGAGTAGAGTTTCTGGAGATCTTCAGGCT
CGATTTCGGGGTAATGTTCTGTTTCtccttttccattgaatttcagtTGC
TTCAAAACGTTTTCGAAGCATAAATTTGACATCCTGAAAGTCTCATCAGT
TATAATGTCAACATTAAGAATTCTGATAAAGTGTCTTTGTAGTCCAGATC
GAATAGCCTTCATCGAGTTCAGCTTGTAAAGGTCACCTTTTGCTGTTCTT
GCAGACACGTAAAGTTTGCTCAACAATTTATCAAGTTCTGACGAGGTGAT
GCCCTTGTAGCTGGTCTTTGCATGCTTACAAAAAGCTTCTAGAATTCTCA
CTGCGTAAGAAGTGTTTTGGTCCGTATTCTTCGCGTTTTTCTTCTCCATC
ATCGTCTCTATTTGTTGATCAGTTAATTCAGCAAATCTACTTCCATTACT
GGATATTCCAgtattgaaattgaatttttttaggtCTGCCATCTCTGTTC
TGTCGTCCTTTCTGTTTgaatttttgactgattttgattttacagtttgt
ttttgtttttcgtttCCAATGGTTTCATCATCCAATCAGAACACAGACGC
GTCATTTTTGGCCAATCAAATTTATCCGTCAAAAAGAAGGCCCTGCGCTG
CTAAATATGTAGCGTCGAGGTTGAccaatattcaaaaatattggacaggt
agagaaccaatcagaattcactgat

Coding sequence (CDS) from alignment at sc0000825:20541..21265

>TCONS_00030516 ID=TCONS_00030516|Name=TCONS_00030516|organism=Clytia hemisphaerica|type=CDS|length=492bp|location=Sequence derived from alignment at sc0000825:20541..21265 (Clytia hemisphaerica)
TGGTGCTGACAAATCGAATGACGAGTAGAGTTTCTGGAGATCTTCAGGCT
CGATTTCGGGGTAATGTTCTGTTTCtccttttccattgaatttcagtTGC
TTCAAAACGTTTTCGAAGCATAAATTTGACATCCTGAAAGTCTCATCAGT
TATAATGTCAACATTAAGAATTCTGATAAAGTGTCTTTGTAGTCCAGATC
GAATAGCCTTCATCGAGTTCAGCTTGTAAAGGTCACCTTTTGCTGTTCTT
GCAGACACGTAAAGTTTGCTCAACAATTTATCAAGTTCTGACGAGGTGAT
GCCCTTGTAGCTGGTCTTTGCATGCTTACAAAAAGCTTCTAGAATTCTCA
CTGCGTAAGAAGTGTTTTGGTCCGTATTCTTCGCGTTTTTCTTCTCCATC
ATCGTCTCTATTTGTTGATCAGTTAATTCAGCAAATCTACTTCCATTACT
GGATATTCCAgtattgaaattgaatttttttaggtCTGCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_017497XLOC_017497Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00030516-exon-sc0000825-1491911889:20541..21265TCONS_00030516-exon-sc0000825-1491911889:20541..21265Clytia hemisphaericaexon
TCONS_00030516-exon-sc0000825-1510915933:20541..21265TCONS_00030516-exon-sc0000825-1510915933:20541..21265Clytia hemisphaericaexon
TCONS_00030516-exon-sc0000825-1575043694:20541..21265TCONS_00030516-exon-sc0000825-1575043694:20541..21265Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00030516-proteinTCONS_00030516-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000825supercontigsc0000825:20541..21265 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.206266	0.0670473	0	0	0.0927204	0.512882	0	0.0827551	0	0.0717665	0	0.228953	1.92053	0.522367	0.312332	0.33518	0.0516144	0	1.68103	3.44168	0	0.0972748	0.157667	0.215013	0.295278	0.0658822	0	0	0	0.0777509
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR023109Integrase_recombinase_N
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00030516 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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