TCONS_00030514 (transcript) - C. hemisphaerica

Overview
NameTCONS_00030514
Unique NameTCONS_00030514
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length411

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00030514 ID=TCONS_00030514|Name=TCONS_00030514|organism=Clytia hemisphaerica|type=transcript|length=411bp
aaatatgctacgacacgctttgctctgaaggtcgggcatattttaacatc
tggaaggtttgcaTTACGGAATTTGACTTGACCGCGTTTGAACATTTTGT
GAGAAGCTTGGAAACGATCAACATAGCAAGTTAGCATCTAATTCCATTTC
GGATGCGGGTGCTAGgcagaaaataataacaaatctgattcgcatcagat
ttgttatattttctagGCTAGCACCACATTCAAATCAATATTAGCACCAT
ATTCTATATGGTTCGGAATCATATTCATGTACCAAACATAAACAATCATC
CCTAATTTAGCTTCATTTACATGAAAATACAacttaaaacatgaatttat
tgctttttcctACTTACCTAGACATACTCGATAAATATTACACTAACCTT
CATAGTTTTCA
Run BLAST on NCBI

transcript from alignment at sc0000825:833..1243

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00030514 ID=TCONS_00030514|Name=TCONS_00030514|organism=Clytia hemisphaerica|type=transcript|length=411bp|location=Sequence derived from alignment at sc0000825:833..1243 (Clytia hemisphaerica)
TGAAAACTATGAAGGTTAGTGTAATATTTATCGAGTATGTCTAGGTAAGT
aggaaaaagcaataaattcatgttttaagtTGTATTTTCATGTAAATGAA
GCTAAATTAGGGATGATTGTTTATGTTTGGTACATGAATATGATTCCGAA
CCATATAGAATATGGTGCTAATATTGATTTGAATGTGGTGCTAGCctaga
aaatataacaaatctgatgcgaatcagatttgttattattttctgcCTAG
CACCCGCATCCGAAATGGAATTAGATGCTAACTTGCTATGTTGATCGTTT
CCAAGCTTCTCACAAAATGTTCAAACGCGGTCAAGTCAAATTCCGTAAtg
caaaccttccagatgttaaaatatgcccgaccttcagagcaaagcgtgtc
gtagcatattt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_017495XLOC_017495Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00030514-exon-sc0000825-1491911889:833..1243TCONS_00030514-exon-sc0000825-1491911889:833..1243Clytia hemisphaericaexon
TCONS_00030514-exon-sc0000825-1510915933:833..1243TCONS_00030514-exon-sc0000825-1510915933:833..1243Clytia hemisphaericaexon
TCONS_00030514-exon-sc0000825-1575043694:833..1243TCONS_00030514-exon-sc0000825-1575043694:833..1243Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000825supercontigsc0000825:833..1243 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.33561	0.351334	0.685489	1.08613	1.48154	0	0	0.736436	0.47935	0.512596	1.89636	0.970335	0.973491	0.970447	0	0	0.703314	0.572902	0	0	0.19212	0	0	0	0.49025	0.5226	0	0	0.200998	0.209894
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00030514 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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