TCONS_00030509 (transcript) - C. hemisphaerica

Overview
NameTCONS_00030509
Unique NameTCONS_00030509
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length639

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00030509 ID=TCONS_00030509|Name=TCONS_00030509|organism=Clytia hemisphaerica|type=transcript|length=639bp
TTTATATCTTGTTTGCTGGATGAAATAAAATCAAGATAACAGAGTTTTAT
CCATTGTTGCACAACTCGAAAAGCTTTGCTTTGTTGTCTTGATTTGAACT
TTCTATATTATTACTTATTTATGGCAGAAAATAATGATGGTGAGTAGCAG
TGTTCCTCACAGCCATCACAGTCAAAGCGACCAAGAAAGACAAGTCTTGG
TTTGATGAAACAAATTGTGGCAGTTAACAAATCACTTAAAGCTAAAGCAA
AATCCAAGAAAAAATCAGAGATTTGCTTTGTTGAACTCAAGAGATCTGCT
GAAACTGGTCAAAGGATCTTCAAGCTGAAGAGACCAAAACATAACAATCG
AATGAAAAGAAGAATATCAAATACTGTAATCACTGCAGATGAGCAAGTTT
TGGACATTGATGTAGAAAATTCAAACTGGCAAATTGCAGAAAATGTGGAC
ACCATCGATAATGAATTAAATGACATAAATTCACAAAGTGATACAAAAAt
gAATAGTTGGTTAGAAACGCTTCTTAACTTTGTCAAAACAAAATAGAAGA
AGAAGTCATGGTTCGAAAGATCAAGATCCTGCCAAGAAGATTGGGATTTG
CTGAGGAAGAATATTTGGAGGACAATGCAGGCTAGGGNN
Run BLAST on NCBI

protein sequence of TCONS_00030509-protein

>TCONS_00030509-protein ID=TCONS_00030509-protein|Name=TCONS_00030509-protein|organism=Clytia hemisphaerica|type=polypeptide|length=113bp
MKQIVAVNKSLKAKAKSKKKSEICFVELKRSAETGQRIFKLKRPKHNNRM
KRRISNTVITADEQVLDIDVENSNWQIAENVDTIDNELNDINSQSDTKMN
SWLETLLNFVKTK
Run BLAST on NCBI

transcript from alignment at sc0000825:57815..62246+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00030509 ID=TCONS_00030509|Name=TCONS_00030509|organism=Clytia hemisphaerica|type=transcript|length=4432bp|location=Sequence derived from alignment at sc0000825:57815..62246+ (Clytia hemisphaerica)
TTTATATCTTGTTTGCTGGATGAAATAAAATCAAGATAACAGAGTTTTAT
CCATTGTTGCACAACTCGAAAAGCTTTGCTTTGTTGTCTTGATTTGAACT
TTCTATCTAAAATTAAAATGGCTActttcaaattgaatttcttttaaacA
TACAGGAACAGATCAACATATTATTACTTATTTATGGCAGAAAATAATGA
TGGTGAGTAGCAGTGTTCCTCACAGCCATCACAGTCAAAGCGACCAAGAA
AGACAAGTAAGTAGTTTCTTCTTTgtgttcaacattttcattgtcACATT
TTGTCAACATAAGGAGGCGAGTGGTggaaaaacaagtttttgtgattgtt
ttttaacgtcctgtcagcaccttgaactgactacccaattcccctcacat
ggcatgggttgactctggcgaaggttcattcacttgccaagtgaaccact
gcgagtgggaatcaaacCTCAGTCCACAGTCCACAGCGCCTAATTTTTAT
GCATTTACAAGCATTAACCACTGAAAGGCATGATAGTAGATTGTGATCTG
ATTATGAGATAAAAGTCAATATATCAATCAGGAAgaactcaaatcaaaac
acaTACCGtaacaaaaattcactttcgtCTTTAAAATGTACATTTATTGC
TATATTCAGCTATATTCCATAAAATACACAGTGCAAAGGTTTATGATGGC
AGATAGCGCAATGTACTGgggatcaggtaacttgcatcagtggaggctaa
cgttttgcctgtatatttacataaattgtGGTGACAAGGCAAGTGACTGA
ATATgcctgaatatttgtggataaatctgaaaaagaaacactGACTGTCA
GCATCAAAGAAGAATCGTTTATGGTCCTTTGTTTCCAAGTTAtccaagta
agtaagtataaaaATTTGAACCTGGGAGCGAAATTGACTGATTATTAATG
ATTGAATTGAAATTTCATTGTTGTTAAGGTTTGGAAATtctgaatttttc
aaaaccaaTTTACTCTCGGAAATTCTGTGTCGTCCGCCCTCCCCCCCCAT
TCATGGACAAAacctggaatggcccattaaaATAtaacattaaatcaaaa
caaaaatggtagagtagagctgcgtagttcatttgttttgaaaatttgct
gctttgattgatcagtcatttgatggctatgcaagtttccctccactgat
gcaagttacccgacttcacgatATCACCTATCCATGGTACTCTCTTTAAA
GGTACACATCAATATTTGAATTAAGATTATTTGATTAATGTATGACCATT
ACTGCATATATAAAACACCATACTGTGTCTTAAAGTTTTTGGTTTGAGAC
AATGTTTGTTTGCTAACTCAGCTTTTTTGAATTATATACAAGCTCTTTAG
TACCGTCGAAGAGTGATACATTGCGCTTTTCTGCCATACTTTGCACAGTG
TATTTTACCAAATAACCAATATGTACATTTTAAAGACGAAGGCGAATTTT
TGTAAGGTTTAGATTGTAATTGATCACATGTTTCAATCTGTAAACAAGAG
ATTCAATTTGATGACtggaattttgagtaaaacAAAGGGAAAAAAATGAG
TGAAAAGTATGGCAGAAAAGTGCAATATATCACCCTTTGATGGCATTGAA
TAGATATGAACGTGAAGCAATCTTTGatcgaaaacaaaaagaaatccaaa
atatttgtttacctCAACCAAAAAGAGAAATAGACCGATATCtggtctga
tatgaaacatgaaaACCGATATCTCAATCTAAAAAATGAGTTTTATGTAA
TTTAAATTTACACAAGAATGATTTAAGACCTTAAAAAATTATCATGTCCA
ATCTTAAATTTaaccacaaaaaatattttgtccaagTACCAAGAAACCTG
AACTTTTCTAAGACGATGTCATAGAATCCCGAAAGCTCTATTCAATCTTA
AAGATTAATTAAAAATCTCTAAGATTAATAATAACCTCCTTtaaaaaaca
taactttttaatGGAACTAATCATAAaccaattttttagaatttaaaaga
aTCAAACTTTGTTGCTCGATAAATTTCTATTAAGTTTTGTTGTCATTAAA
CTTAATTGAACTCACAATTTTATATACCTGATTATTGAGTTTGATTGAAG
TAATCAATGTAATCGAACTAACAGaactaaaaaactgaagaaaTAATGCA
CATGATGTGCCTGTTAAACTGATGGCCACTACTCAAAGCTCTAAAGTCTC
TGCACACTAATTTACTGGTCGAACTTTGTGGAACTATAATATTTGTCAGG
TTTGCTGAACTTTCTCTGTTGTCATACTTTGCAGAAGTTCCTTGAATTTT
AATCAAACACTTGGATTTTNGTTTTCTGTTGTCATACTTTGCAGAAGTTC
ATTGAATTTTAATCAAACTCTTAGATTTTTTAAGACAGTAGTCTGGATTA
CATGATATGAGATTGATAATTGATGATTAAATGATTTGCAATATTGCAtt
cagattataaaaatcgGCAATGATAATCAAGGTTTGTTAAATGTCTAATT
AATATTTATTAGTTAATTTTATTGGGTGATCAATAGTGCTAATCTATCAT
TTATCAGTCATCTAGATCATGATTGCTGGTCAagaatttataaatttcaa
gaattttttgagTTGTAACATCTgatatttctgaaaaatatcatCCATGT
AGCATTATGTCTGATGTTTTAGATAAAaccaagaatgtttttttttgccc
ttGGGAATAGGCTTCagttacttttgaaaaacaaagtATTTTAGCTGCCT
TGGACatatataaaaagtattttgcaaagaaagcatgttttcaccatttt
ttttgCAACTAAATTTACTACTATTGACTTATCACCTTGGCTATACaaga
tatgaaattttgaaggtttgattaatttttccCGGGGGCCCCGGGAACta
ggtactaggtttgcgaggtgacgggtatgtccgagccgaaaatcgaaaat
caaccctttgagagacaaaattttggtgattttgggaccctttgagagac
tttttcctatattttggtccattttttccaaattttggtttgattttcac
caaattttggtcaaaattcttggaaatcgtgaccctttgagagagaaatt
tttgatttttGTGATTTTGGGGCCCTTTCAGAGAATAAcatttgaatttg
tacccctttgagaaaaggtacccttatggctcgcacatacccggcaccca
ttttgcctaagtacccccccgggtattttttctatttttctactTTCCTT
AACACTGCAGATCACTGGATAGCATCATTTTAATCactaaaacttttctt
ttaacATGAAtggatttgaaaaattgttatttATTTGTAAAGAGGATATA
TTCATCCCATGGAAAATTGTGAAGGTTGCTAAAAAcctcaaaattacaaa
aattcttTGTCTACACATCACTTTGTTTAGGTCTTGGTTTGATGAAACAA
ATTGTGGCAGTTAACAAATCACTTAAAGCTAAAGCAAAATCCAAGAAAAA
ATCAGAGATTTGCTTTGTTGAACTCAAGAGATCTGCTGAAACTGGTTAGT
ATATTTTGTTTGTGCGGGACAactgaaactctaaattttgtcATCAATAC
AGACCAAAGAGATTTATCcctgtttcaaacttttcagCCTGAATTTTGTT
GcacaaaaacttttgaaaggtTTAATTTTTAGCTAAGCTTTGTTGTCTTG
TTCAATTTTAAATGCATGcattctttctcttttttttggataATCTAGGT
CAAAGGATCTTCAAGCTGAAGAGACCAAAACATAACAATCGAATGAAAAG
AAGAATATCAAATACTGGTAAATGTGCAGTTACATTATTTTATACACTGG
GTAATATTGAGGTACCTAAATCTAAATAGAGTTGTGTGTGTTGtatgtat
tgaaatttcaactctttcttgttattttcatcAGTAATCACTGCAGATGA
GCAAGTTTTGGACATTGATGTAGAAAATTCAAACTGGCAAATTGCAGAAA
ATGTGGACACCATCGATAATGAATTAAATGACATAAATTCACAAAGTGAT
ACAAAAAGTAGGTATCATATCATCCCTTCTTGAAGACAATTAAGGAAAAa
acattgtttaaaattttcactgtTATAAGACTCTATGTAAGATTAAATCC
ACCCTCATAAAAAAGGgggaaaattggcaaaaaaacatttttggtgtTAA
TGTAACAGAGTAATAACGATCAgctattttaatttatttcagtgAATAGT
TGGTTAGAAACGCTTCTTAACTTTGTCAAAACAAAATAGAAGAAGAAGTC
ATGGTTCGAAAGATCAAGATCCTGCCAAGAAGATTGGGATTTGCTGAGGA
AGAATATTTGGAGGACAATGCAGGCTAGGGNN

Coding sequence (CDS) from alignment at sc0000825:57815..62246+

>TCONS_00030509 ID=TCONS_00030509|Name=TCONS_00030509|organism=Clytia hemisphaerica|type=CDS|length=1368bp|location=Sequence derived from alignment at sc0000825:57815..62246+ (Clytia hemisphaerica)
ATGAAACAAATTGTGGCAGTTAACAAATCACTTAAAGCTAAAGCAAAATC
CAAGAAAAAATCAGAGATTTGCTTTGTTGAACTCAAGAGATCTGCTGAAA
CTGGTCAAAGGATCTTCAAGCTGAAGAGACCAAAACATAACAATCGAATG
AAAAGAAGAATATCAAATACTGTAATCACTGCAGATGAGCAAGTTTTGGA
CATTGATGTAGAAAATTCAAACTGGCAAATTGCAGAAAATGTGGACACCA
TCGATAATGAATTAAATGACATAAATTCACAAAGTGATACAAAAAtgAAT
AGTTGGTTAGAAACGCTTCTTAACTTTGTCAAAACAAAATAGATGAAACA
AATTGTGGCAGTTAACAAATCACTTAAAGCTAAAGCAAAATCCAAGAAAA
AATCAGAGATTTGCTTTGTTGAACTCAAGAGATCTGCTGAAACTGGTCAA
AGGATCTTCAAGCTGAAGAGACCAAAACATAACAATCGAATGAAAAGAAG
AATATCAAATACTGTAATCACTGCAGATGAGCAAGTTTTGGACATTGATG
TAGAAAATTCAAACTGGCAAATTGCAGAAAATGTGGACACCATCGATAAT
GAATTAAATGACATAAATTCACAAAGTGATACAAAAAtgAATAGTTGGTT
AGAAACGCTTCTTAACTTTGTCAAAACAAAATAGATGAAACAAATTGTGG
CAGTTAACAAATCACTTAAAGCTAAAGCAAAATCCAAGAAAAAATCAGAG
ATTTGCTTTGTTGAACTCAAGAGATCTGCTGAAACTGGTCAAAGGATCTT
CAAGCTGAAGAGACCAAAACATAACAATCGAATGAAAAGAAGAATATCAA
ATACTGTAATCACTGCAGATGAGCAAGTTTTGGACATTGATGTAGAAAAT
TCAAACTGGCAAATTGCAGAAAATGTGGACACCATCGATAATGAATTAAA
TGACATAAATTCACAAAGTGATACAAAAAtgAATAGTTGGTTAGAAACGC
TTCTTAACTTTGTCAAAACAAAATAGATGAAACAAATTGTGGCAGTTAAC
AAATCACTTAAAGCTAAAGCAAAATCCAAGAAAAAATCAGAGATTTGCTT
TGTTGAACTCAAGAGATCTGCTGAAACTGGTCAAAGGATCTTCAAGCTGA
AGAGACCAAAACATAACAATCGAATGAAAAGAAGAATATCAAATACTGTA
ATCACTGCAGATGAGCAAGTTTTGGACATTGATGTAGAAAATTCAAACTG
GCAAATTGCAGAAAATGTGGACACCATCGATAATGAATTAAATGACATAA
ATTCACAAAGTGATACAAAAAtgAATAGTTGGTTAGAAACGCTTCTTAAC
TTTGTCAAAACAAAATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_017492XLOC_017492Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00030509-exon-sc0000825-1491911889:57815..57918TCONS_00030509-exon-sc0000825-1491911889:57815..57918Clytia hemisphaericaexon
TCONS_00030509-exon-sc0000825-1510915933:57815..57918TCONS_00030509-exon-sc0000825-1510915933:57815..57918Clytia hemisphaericaexon
TCONS_00030509-exon-sc0000825-1575043694:57815..57918TCONS_00030509-exon-sc0000825-1575043694:57815..57918Clytia hemisphaericaexon
TCONS_00030509-exon-sc0000825-1491911889:57982..58070TCONS_00030509-exon-sc0000825-1491911889:57982..58070Clytia hemisphaericaexon
TCONS_00030509-exon-sc0000825-1510915933:57982..58070TCONS_00030509-exon-sc0000825-1510915933:57982..58070Clytia hemisphaericaexon
TCONS_00030509-exon-sc0000825-1575043694:57982..58070TCONS_00030509-exon-sc0000825-1575043694:57982..58070Clytia hemisphaericaexon
TCONS_00030509-exon-sc0000825-1491911889:61295..61408TCONS_00030509-exon-sc0000825-1491911889:61295..61408Clytia hemisphaericaexon
TCONS_00030509-exon-sc0000825-1510915933:61295..61408TCONS_00030509-exon-sc0000825-1510915933:61295..61408Clytia hemisphaericaexon
TCONS_00030509-exon-sc0000825-1575043694:61295..61408TCONS_00030509-exon-sc0000825-1575043694:61295..61408Clytia hemisphaericaexon
TCONS_00030509-exon-sc0000825-1491911889:61613..61681TCONS_00030509-exon-sc0000825-1491911889:61613..61681Clytia hemisphaericaexon
TCONS_00030509-exon-sc0000825-1510915933:61613..61681TCONS_00030509-exon-sc0000825-1510915933:61613..61681Clytia hemisphaericaexon
TCONS_00030509-exon-sc0000825-1575043694:61613..61681TCONS_00030509-exon-sc0000825-1575043694:61613..61681Clytia hemisphaericaexon
TCONS_00030509-exon-sc0000825-1491911889:61799..61921TCONS_00030509-exon-sc0000825-1491911889:61799..61921Clytia hemisphaericaexon
TCONS_00030509-exon-sc0000825-1510915933:61799..61921TCONS_00030509-exon-sc0000825-1510915933:61799..61921Clytia hemisphaericaexon
TCONS_00030509-exon-sc0000825-1575043694:61799..61921TCONS_00030509-exon-sc0000825-1575043694:61799..61921Clytia hemisphaericaexon
TCONS_00030509-exon-sc0000825-1491911889:62107..62246TCONS_00030509-exon-sc0000825-1491911889:62107..62246Clytia hemisphaericaexon
TCONS_00030509-exon-sc0000825-1510915933:62107..62246TCONS_00030509-exon-sc0000825-1510915933:62107..62246Clytia hemisphaericaexon
TCONS_00030509-exon-sc0000825-1575043694:62107..62246TCONS_00030509-exon-sc0000825-1575043694:62107..62246Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00030509-proteinTCONS_00030509-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000825supercontigsc0000825:57815..62246 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.05077	4.05772	1.63695	0.678936	33.7559	31.9749	34.8924	35.5012	18.2021	19.9444	20.2185	16.5571	16.3482	16.9539	10.6773	14.8708	15.7811	20.5406	12.3113	20.7036	17.1293	14.7262	7.59126	12.4944	30.6153	29.496	26.098	20.758	16.965	16.0738
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00030509 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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