TCONS_00030304 (transcript) - C. hemisphaerica

Overview
NameTCONS_00030304
Unique NameTCONS_00030304
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1230

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00030304 ID=TCONS_00030304|Name=TCONS_00030304|organism=Clytia hemisphaerica|type=transcript|length=1230bp
GCCATAAGGTAACTTTAGGAAAAACCTGTTCTTAAAAGACCTGCATAAAT
AGAGGCGCGGCTAGAAGCAAAACATTTAAACGAAAAAACTCTAGAAGAAA
ACAACAATCGTGAATTTTTACTACACTACAAACCAAGACATCAACAATGG
CAAATCTATCTCAACTCGCTATCTTACTCTGCTTTGCTATTTGCTTGGCA
TCTTCGAGAAATCTAAACAAACAATCATGGCGTAAAAATTCATCAGGGCG
TAAACATCCGATTGGGCGTTTATGTTACCCTCAACAAGGCGAACATTTTA
CCATCTACGCAACATTTGAGAATGATATCTTCACAAATTTGACGAACCCT
AACACAACCATCCAAGTAAGACATGCTGATATCCTTTGGCGAGAATATGG
AAGATGCATTTCAGAAGGAAAATCAAGTAACGGCCATATCGTATCGTGTA
AAATCCCTAAAAGAAACTACAAACTTACAAGCATACATCGAATAACAATG
AAGGAAGTGAGAAATGGTACACTTTCGCGTATGAGGTATCCTTTCAAAAT
AACATCATATAGTTGTTTGGATCCGGCTGACAAGAAATCGGAATTGAACA
TTTTACCCGTTCAAGATAATTCAACCACTCAGAGTCCAAAAAATCGGATT
CTCGTTCAATGGACAAGACTTAATACCACTAATCCAAATCGGACTAGCCT
ATTCATTAACGGGATTCAAAATACAAATCTTGAATGCGCATGCCCAAACA
AAGGATCCTGTAAAAACacatcaaccaatcaaaattgttCAATCTACATG
GTCGGTTTCTCACATTGTACGAACTATAGAATATGCGTTGAAACAACGTC
AGCTACGCGCAAAATACAATATTGTGCGCAATACAAAACTTTATGTACTT
CCTACCAAAATGGGAATGGGCAAATGGAGGGTGTCGCTACAAACAGTACT
ACCGTGATTCTAATCGTGCTTATTGTTCTTGTGGCTTTGATTCTGTTAAT
GATCATTTTTGCCGATAGAATTTGGTAAGATGCGATTCTAATGTGATaga
aattgtaatttttaaagaatatttagtggcttgtaaattttttgttttat
ctttttgtattaaattgtaTTTTATTTACACTTTTTGAATATGAATATGT
AAGTTAATAGCATATTTTGCTTGTAAATTAGAATCTTTTTAACGAATTTA
TATTTGATAAGAAATAAGaatgaatcaaaa
Run BLAST on NCBI

protein sequence of TCONS_00030304-protein

>TCONS_00030304-protein ID=TCONS_00030304-protein|Name=TCONS_00030304-protein|organism=Clytia hemisphaerica|type=polypeptide|length=293bp
MANLSQLAILLCFAICLASSRNLNKQSWRKNSSGRKHPIGRLCYPQQGEH
FTIYATFENDIFTNLTNPNTTIQVRHADILWREYGRCISEGKSSNGHIVS
CKIPKRNYKLTSIHRITMKEVRNGTLSRMRYPFKITSYSCLDPADKKSEL
NILPVQDNSTTQSPKNRILVQWTRLNTTNPNRTSLFINGIQNTNLECACP
NKGSCKNTSTNQNCSIYMVGFSHCTNYRICVETTSATRKIQYCAQYKTLC
TSYQNGNGQMEGVATNSTTVILIVLIVLVALILLMIIFADRIW
Run BLAST on NCBI

transcript from alignment at sc0000806:54463..55771-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00030304 ID=TCONS_00030304|Name=TCONS_00030304|organism=Clytia hemisphaerica|type=transcript|length=1309bp|location=Sequence derived from alignment at sc0000806:54463..55771- (Clytia hemisphaerica)
GCCATAAGGTAACTTTAGGAAAAACCTGTTCTTAAAAGACCTGCATAAAT
AGAGGCGCGGCTAGAAGCAAAACATTTAAACGAAAAAACTCTAGAAGAAA
ACAACAATCGTGAATTTTTACTACACTACAAACCAAGACATCAACAATGG
CAAATCTATCTCAACTCGCTATCTTACTCTGCTTTGCTATTTGCTTGGCA
TCTTCGAGAAATCTAAACAAACAATCATGGCGTAAAAATTCATCAGGGCG
TAAACATCCGATTGGGCGTTTATGTTACCCTCAACAAGGCGAACATTTTA
CCATCTACGCAACATTTGAGAATGATATCTTCACAAATTTGACGAACCCT
AACACAACCATCCAAGTAAGACATGCTGATATCCTTTGGCGAGAATATGG
AAGATGCATTTCAGAAGGAAAATCAAGTAACGGCCATATCGTATCGTGTA
AAATCCCTAAAAGAAACTACAAACTTACAAGCATACATCGAATAACAATG
AAGGAAGTGAGAAATGGTACACTTTCGCGTATGAGGTATCCTTTCAAAAT
AACATCATATAGTTGTTTGGATCCGGCTGACAAGAAATCGGAATTGAACA
TTTTACCCGTTCCAGATAATTCAACCACTCAGAGTCCAAAAAATCGGATT
CTCGTTCAATGGACAAGACNAATTGAACATTTTACCCGTTCAAGATAATT
CAACCACTCAGAGTCCAAAAAATCGGATTCTCGTTCAATGGACAAGACTT
AATACCACTAATCCAAATCGGACTAGCCTATTCATTAACGGGATTCAAAA
TACAAATCTTGAATGCGCATGCCCAAACAAAGGATCCTGTAAAAACACAT
CAACCAATCAAAATTGTTCAATCTACATGGTCGGTTTCTCACATTGTACG
AACTATAGAATATGCGTTGAAACAACGTCAGCTACGCGCAAAATACAATA
TTGTGCGCAATACAAAACTTTATGTACTTCCTACCAAAATGGGAATGGGC
AAATGGAGGGTGTCGCTACAAACAGTACTACCGTGATTCTAATCGTGCTT
ATTGTTCTTGTGGCTTTGATTCTGTTAATGATCATTTTTGCCGATAGAAT
TTGGTAAGATGCGATTCTAATGTGATAGAAATTGTAATTTTTAAAGAATA
TTTAGTGGCTTGTAAATTTTTTGTTTTATCTTTTTGTATTAAATTGTATT
TTATTTACACTTTTTGAATATGAATATGTAAGTTAATAGCATATTTTGCT
TGTAAATTAGAATCTTTTTAACGAATTTATATTTGATAAGAAATAAGAAT
GAATCAAAA

Coding sequence (CDS) from alignment at sc0000806:54463..55771-

>TCONS_00030304 ID=TCONS_00030304|Name=TCONS_00030304|organism=Clytia hemisphaerica|type=CDS|length=1764bp|location=Sequence derived from alignment at sc0000806:54463..55771- (Clytia hemisphaerica)
ATTTTACCCGTTCAAGATAATTCAACCACTCAGAGTCCAAAAAATCGGAT
TCTCGTTCAATGGACAAGACTTAATACCACTAATCCAAATCGGACTAGCC
TATTCATTAACGGGATTCAAAATACAAATCTTGAATGCGCATGCCCAAAC
AAAGGATCCTGTAAAAACACATCAACCAATCAAAATTGTTCAATCTACAT
GGTCGGTTTCTCACATTGTACGAACTATAGAATATGCGTTGAAACAACGT
CAGCTACGCGCAAAATACAATATTGTGCGCAATACAAAACTTTATGTACT
TCCTACCAAAATGGGAATGGGCAAATGGAGGGTGTCGCTACAAACAGTAC
TACCGTGATTCTAATCGTGCTTATTGTTCTTGTGGCTTTGATTCTGTTAA
TGATCATTTTTGCCGATAGAATTTGGTAAATGGCAAATCTATCTCAACTC
GCTATCTTACTCTGCTTTGCTATTTGCTTGGCATCTTCGAGAAATCTAAA
CAAACAATCATGGCGTAAAAATTCATCAGGGCGTAAACATCCGATTGGGC
GTTTATGTTACCCTCAACAAGGCGAACATTTTACCATCTACGCAACATTT
GAGAATGATATCTTCACAAATTTGACGAACCCTAACACAACCATCCAAGT
AAGACATGCTGATATCCTTTGGCGAGAATATGGAAGATGCATTTCAGAAG
GAAAATCAAGTAACGGCCATATCGTATCGTGTAAAATCCCTAAAAGAAAC
TACAAACTTACAAGCATACATCGAATAACAATGAAGGAAGTGAGAAATGG
TACACTTTCGCGTATGAGGTATCCTTTCAAAATAACATCATATAGTTGTT
TGGATCCGGCTGACAAGAAATCGGAATTGAACATTTTACCCGTTCAAGAT
AATTCAACCACTCAGAGTCCAAAAAATCGGATTCTCGTTCAATGGACAAG
ACTTAATACCACTAATCCAAATCGGACTAGCCTATTCATTAACGGGATTC
AAAATACAAATCTTGAATGCGCATGCCCAAACAAAGGATCCTGTAAAAAC
ACATCAACCAATCAAAATTGTTCAATCTACATGGTCGGTTTCTCACATTG
TACGAACTATAGAATATGCGTTGAAACAACGTCAGCTACGCGCAAAATAC
AATATTGTGCGCAATACAAAACTTTATGTACTTCCTACCAAAATGGGAAT
GGGCAAATGGAGGGTGTCGCTACAAACAGTACTACCGTGATTCTAATCGT
GCTTATTGTTCTTGTGGCTTTGATTCTGTTAATGATCATTTTTGCCGATA
GAATTTGGTAAATGGCAAATCTATCTCAACTCGCTATCTTACTCTGCTTT
GCTATTTGCTTGGCATCTTCGAGAAATCTAAACAAACAATCATGGCGTAA
AAATTCATCAGGGCGTAAACATCCGATTGGGCGTTTATGTTACCCTCAAC
AAGGCGAACATTTTACCATCTACGCAACATTTGAGAATGATATCTTCACA
AATTTGACGAACCCTAACACAACCATCCAAGTAAGACATGCTGATATCCT
TTGGCGAGAATATGGAAGATGCATTTCAGAAGGAAAATCAAGTAACGGCC
ATATCGTATCGTGTAAAATCCCTAAAAGAAACTACAAACTTACAAGCATA
CATCGAATAACAATGAAGGAAGTGAGAAATGGTACACTTTCGCGTATGAG
GTATCCTTTCAAAATAACATCATATAGTTGTTTGGATCCGGCTGACAAGA
AATCGGAATTGAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_017351XLOC_017351Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00030304-proteinTCONS_00030304-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00030304-exon-sc0000806-1575043694:55173..55771TCONS_00030304-exon-sc0000806-1575043694:55173..55771Clytia hemisphaericaexon
TCONS_00030304-exon-sc0000806-1575043694:54463..55093TCONS_00030304-exon-sc0000806-1575043694:54463..55093Clytia hemisphaericaexon
TCONS_00030304-exon-sc0000806-1510915933:55173..55771TCONS_00030304-exon-sc0000806-1510915933:55173..55771Clytia hemisphaericaexon
TCONS_00030304-exon-sc0000806-1510915933:54463..55093TCONS_00030304-exon-sc0000806-1510915933:54463..55093Clytia hemisphaericaexon
TCONS_00030304-exon-sc0000806-1491911889:55173..55771TCONS_00030304-exon-sc0000806-1491911889:55173..55771Clytia hemisphaericaexon
TCONS_00030304-exon-sc0000806-1491911889:54463..55093TCONS_00030304-exon-sc0000806-1491911889:54463..55093Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000806supercontigsc0000806:54463..55771 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0.209117	0.849164	3.77207	0.809702	0.208278	4.52953	3.81597	3.66998	4.02315	0.130426	0.213892	4.94968	12.3303	0	0.0491614	0.27889	0.289773	0.708841	0.466144	5.62228	4.98326	0.15427	0.0392943
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00030304 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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