TCONS_00030301 (transcript) - C. hemisphaerica

Overview
NameTCONS_00030301
Unique NameTCONS_00030301
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length363

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00030301 ID=TCONS_00030301|Name=TCONS_00030301|organism=Clytia hemisphaerica|type=transcript|length=363bp
GGTAATGGAGAAGGAAATGGAAATGGCGGTGGAAACGGAAAAGGGAACAA
TGGAAATGGCAATGGAAATGGCGGTGGAAACGGAAACGGGAACAATGGAA
ATGGCAATGGAAATGGCGGTGGAAACGGAAACGAGAACAACGGTAATGGC
GGTGGAAACGGAAACGGCCACGGACAATATGGTCAATAAGATGGTCAACA
AAAAGCCAGAAGTTGAGGCATTGAAAATAAACATCCAAAATATGAATTCT
TTAATTTTGGTAGAAATGGagttttgtaattttctgaatttctgtaaaaa
gaaatctttttatgTAAGTATGTGATTTGGAGAAATTTCGAGAGTTAATC
TGACAATCTTTAC
Run BLAST on NCBI

transcript from alignment at sc0000806:20103..20998-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00030301 ID=TCONS_00030301|Name=TCONS_00030301|organism=Clytia hemisphaerica|type=transcript|length=896bp|location=Sequence derived from alignment at sc0000806:20103..20998- (Clytia hemisphaerica)
GGTAATGGAGAAGGAAATGGAAATGGCGGTGGAAACGGAAAAGGGAACAA
TGGAAATGGCAATGGAAATGGCGGTGGAAACGGAAACGGGAACAATGGAA
ATGGCAATGGAAATGGCGGTGGAAACGGAAACGGNTCCCCTGCGGATACC
CTCCACTCCCCATGCACAAACATTTCCTGGAAGAGCCCATTCCAGGCTCA
GCATTGTTCTTAAATTGTTCTTATTTTTTTGGAGATAAATTATTTTCCTT
CGACAAATTTCTTTTAGTATTACCCTGTTTGTAACATTGTCAACACGTAT
GGGACAACATTGAAAGTTGTCTACATTTGTCTGGGTCCTGGATCAAAACG
AAAGAAGGTAAGAAAAAAATTTCTGCTGGTTACTCACTTATAATGAGAAC
AAATAATATTGGGCATTTCAGTGTTGATTTAGCACTTATGTCAGAGAGAG
GTAATTGTCCATTTAGAGATAAAATTAACTTAGGAATTAGCTATAGGCAT
CATTATAGTAAAATATCTTTAATTTTTAAGTCTGGTAATGGAGAAGGAAA
TGAAAATGGCGGTGGAAACGGAAAAGGAAACAATGGAAATGGCAATGGAA
ATGGCGGTGGAAACGGAAACGGGAACAATGGAAACGGTAATGGAAATGGC
GGTGGAAACGGAAAAGAGAACAACGGTAATGGCGGTGGAAACGGAAACGG
CCACGGACAATATGGTCAATAAGATGGTCAACAAAAAGCCAGAAGTTGAG
GCATTGAAAATAAACATCCAAAATATGAATTCTTTAATTTTGGTAGAAAT
GGAGTTTTGTAATTTTCTGAATTTCTGTAAAAAGAAATCTTTTTATGTAA
GTATGTGATTTGGAGAAATTTCGAGAGTTAATCTGACAATCTTTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_017349XLOC_017349Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00030301-exon-sc0000806-1575043694:20866..20998TCONS_00030301-exon-sc0000806-1575043694:20866..20998Clytia hemisphaericaexon
TCONS_00030301-exon-sc0000806-1575043694:20103..20332TCONS_00030301-exon-sc0000806-1575043694:20103..20332Clytia hemisphaericaexon
TCONS_00030301-exon-sc0000806-1510915933:20866..20998TCONS_00030301-exon-sc0000806-1510915933:20866..20998Clytia hemisphaericaexon
TCONS_00030301-exon-sc0000806-1510915933:20103..20332TCONS_00030301-exon-sc0000806-1510915933:20103..20332Clytia hemisphaericaexon
TCONS_00030301-exon-sc0000806-1491911889:20866..20998TCONS_00030301-exon-sc0000806-1491911889:20866..20998Clytia hemisphaericaexon
TCONS_00030301-exon-sc0000806-1491911889:20103..20332TCONS_00030301-exon-sc0000806-1491911889:20103..20332Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000806supercontigsc0000806:20103..20998 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.255193	0.895722	0.357704	0	0	1.05566	1.47241	1.57681	1.22754	21.9953	25.3826	0	0	10.6635	17.2456	66.5596	65.4329	33.8439	44.6788	20.6014	16.9417	16.4472	24.236	0.31589	0.337126	0.255698	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00030301 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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