TCONS_00030298 (transcript) - C. hemisphaerica

Overview
NameTCONS_00030298
Unique NameTCONS_00030298
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1502

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00030298 ID=TCONS_00030298|Name=TCONS_00030298|organism=Clytia hemisphaerica|type=transcript|length=1502bp
AGACAGGCTTCGCTGACATTAATTTCTgcactttgatgtaaaaatgTATT
CCTACTTCATTTTATTATTCAATCTACCGACGCttattatttcaaaactt
ttatggGTAGCAGAAAATCGTACTGTTTTAACTAACAACAAACTGATTAC
AATCCAATCGATGCGATTCAAGAAAACCCCATTTCCATACTACGGAAAAA
ACCCTCTTATTAGTAAGTCGGGTAAGAGTAAAAGGCAATGTGCTGAGATA
TGTATGGACGATGAGCAGTGTATTTCTTGGTCCTCTGATGGTGATCTTTG
TTTGTGTTATTCGATAAGCTTTCTTGCTGGTCAACAAGCTACTACAAATA
CATTCTCAGATGAATGGTCTTCGTTCGAAGTCATGAATCCGTGCACCGAA
AATCTGAATTTATGCGAGCACGGGAGTACCTGTGCACCTGATCGTTTGAA
TAAAACATACGAATGCCTTCTTTGCTTGGCTCCGTATACTGGATTACATT
GCAATGAAACAGGTCCGCCGACCCCTCCGACAGTTAGCCAAGATATTTTG
GATGGTAAGAACAGCTCATGCAGAACACTCAAGAAGTATTACGACATATC
TGTCCACAAAACAATACAAACTATCTACCCTTGGAGGGATCAAAGAAACA
TTACCGTAGTTTGCCATGGTGATCGAATGACAGTGACGAAAATTACGAAT
AGTAACTCGGAGATAAGAGgtGATAACTATTGGAAACCTGTTGTCACTCA
TTGGGCCTGGGTACCAAACAGCCTGGGTTACACGTGGGATCCAGAAGATG
GTAAACTTTCAACAAGGTCATCAGTTCTTAAAGAGGATAGACCcttcaaa
aatgttgttatTGGAAATGATGGGAAACATTTTACGTTTTCTGATGACCA
ACCAAAACAATGTTTTGGAAACGTTTGGGACTGGTTTAAGATTGAAGTTg
tttgaaattctttaaaaacgtcaaaaaacttACCAGAAACCATGTTTTCC
ACCTATGTATGACACAATGGTGAAAAACtagataaaaaacaaactttata
tCAACAAAATAATCAACTGATGGCAGGAGATGTGGATTCCACATATGTCA
AAACATTTCGTAAAAAGATTAGATTGCAggaacatttttttaaacgaGTA
CATATATTTAAAGTTGTTACAGTTTTAAAGAAAACGGACACTACTGCCAG
CTTCACGCTTAATGCGATCCTTTGGTTCAGTACCGTGAACACCGAAGCTT
CTCTGAAGTTAAGCTGTGGAGAcgtactgtaaaaattttatcgtGCATGT
AATGAATCGAAGATGGAGAGTACatattaaccctattcatactattatac
taggcttttaggggtggTTCAAAACTAGTGGAGGGGGGCTTTTcgtgtac
caccccttaacttttgttCTAGAGGGtctttttggttgaaatttggcaca
caagatccttgtcacataaggtaacttttaacgaaaatttttttttgatg
ac
Run BLAST on NCBI

protein sequence of TCONS_00030298-protein

>TCONS_00030298-protein ID=TCONS_00030298-protein|Name=TCONS_00030298-protein|organism=Clytia hemisphaerica|type=polypeptide|length=303bp
MYSYFILLFNLPTLIISKLLWVAENRTVLTNNKLITIQSMRFKKTPFPYY
GKNPLISKSGKSKRQCAEICMDDEQCISWSSDGDLCLCYSISFLAGQQAT
TNTFSDEWSSFEVMNPCTENLNLCEHGSTCAPDRLNKTYECLLCLAPYTG
LHCNETGPPTPPTVSQDILDGKNSSCRTLKKYYDISVHKTIQTIYPWRDQ
RNITVVCHGDRMTVTKITNSNSEIRGDNYWKPVVTHWAWVPNSLGYTWDP
EDGKLSTRSSVLKEDRPFKNVVIGNDGKHFTFSDDQPKQCFGNVWDWFKI
EVV
Run BLAST on NCBI

transcript from alignment at sc0000806:111583..126884+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00030298 ID=TCONS_00030298|Name=TCONS_00030298|organism=Clytia hemisphaerica|type=transcript|length=15302bp|location=Sequence derived from alignment at sc0000806:111583..126884+ (Clytia hemisphaerica)
AGACAGGCTTCGCTGACATTAATTTCTgcactttgatgtaaaaatgTATT
CCTACTTCATTTTATTATTCAATCTACCGACGCttattatttcaaaactt
ttatggGTAGCAGAAAATCGTACTGTTTTAACTAACAACAAACTGATTAC
AATCCAATCGATGCGATTCAAGAAAACCCCATTTCCATACTACGGAAAAA
ACCCTCTTATTAGTAAGTCGGGTAAGAGTAAAAGGCAATGTGCTGAGATA
TGTATGGACGATGAGCAGTGTATTTCTTGGTCCTCTGATGGTGATCTTTG
TTTGTGTTATTCGATAAGCTTTCTTGCTGGTCAACAAGCTACTACAAATA
CATTCTCAGATGAATGGTCTTCGTTCGAAGTCATGGTAAGtcaaacaacg
ttgtttaaacATTTAActaacattcacaacgtccatataacgttatatga
aggTTTTGATAACAACTGGGGAGGGGGTACATGGAAAAAAGGGTGtaggg
tatgtgcgagccatcaTAGTCTGACCAACTTCGCAATGCTGTAACTTTTC
ATCTAAGAAAGATACGTAAAATCTGAACACAGATTTGAAAAATTAGCAAT
GTTCAAAGTTTCTAAATAGTCTAATGTCATGGTTTTTAAAACAGTAGAAA
CAGTGTGTCCACACACTTTAGTATCTATGGTGATATCGCTAGGTGCCTAG
CGGGGAAGGACATTTTTTTTGTCAGTAGTGTGTTGTTTTATTTGTTCGCT
AGTGTACCATGATACCCACGttataaagagaaaaaaacccCTTACTAACA
CCACAGTAATTACTTTCAATTTTCTATCACGTTTAGAATCCGTGCACCGA
AAATCTGAATTTATGCGAGCACGGGAGTACCTGTGCACCTGATCGTTTGA
ATAAAACATACGAATGCCTTCTTTGCTTGGCTCCGTATACTGGATTACAT
TGCAATGAAACAGGTAAAGCCCATAAttgcggctagttcgaaacgctggt
cacaggtcacaggtcacaggtcacaggtcccCGGGGGggtgtgcatagca
ctacttcgtcacatatccttacttcgtctcctattgttattttctctttt
acgtcataatatatgcatgaataATCGCATAAATTNNNNNNNNNNNNNNN
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tgcattgcgtaagagttctttaaaaatttcgcaaaaatttatattcccac
taaatggtcacgtgatttaaaagttagattttacagattagtcaaaaaaa
ctttcattacatggtcacatgattttaaagttagattttgcagatcagtc
aaaaaaatgtatccttacttggtcacatgacttgaaagttaNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNagtcaaaaaaatttatccttacttggtcaca
tgacttgaaagttagattttgcagatcagtcaaaaagatttatccttact
tggtcacatggcttgaaagttagatttcgcagatcaggtaaaaaaaatta
tccttatttggtcacaaTGCATTGCGTATGAGTTATATTTAAAACNAATC
AAATCACTAATATATATGTAATATTTTGAAGAGTGAGTGCACGATGAACA
ATCGTGATTGAATATCTAAAGAAATGTCTCGAAGAAACGATAATACGCAT
GCACGTGCTCTACACATTGTCAGAAAAAAACTTCTGAAGCAAATGGCTTT
TTTTCGTGACGAAATAAAACAAGAaagtatgaaaagaaaaagcaaaatta
ttattttttacgtttttattcTGCTTTTTGGAAATGTAATCAAAACCGAG
AACCGTCTTATAGAACACGGCTATAGNacttggtcacatgacttgaaagt
tagattttgcagatcagtcaaaaaaaattatccttacttggtcacatgac
ttgaaagttagattttgcagatcaggtaaaaaaaattatccttatttggt
cacaaTGCATTGCGTATGAgttatatttaaaattttgcaaaaattcataT
TCCCACTACaaggtcacgtgatttaaaagttaaattttacagatcagtca
aaaagataatccttacttggtcacatgacttgaaagttagattttgcaga
tcagtcaataagatttatccttacttggtcacatgactttaaagttagat
tttgcagatcagtcaaaaaaaattatccttacttggtcacatgacttgaa
agttagattttgcagatctgTCAAAAACatgtatccttacttggtcacat
gacttgaaagttagattttgcagatcaggcaaaaaaatttatccttactt
ggtcacatgacttgaaagttagatttcgcagatcaggtaaaaaaaattat
ccttatttggtcacaaTGCATTGCATATGAgttatatttaaaattttgca
aaaattcataTTCCCACTACaaggtcacatgacttgaaagttagattttg
cagatcagtcaaaaagatttatccttacttggtcacatgacttgaaagtt
agatttcgcagatcaggcaaaataatttatccttacttggtcacatgact
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNtgaaagttagatttcgcagatcaggcaaaaaaaatttatccttactt
ggtcacgatgcattgtgtaagagttctttaaaaatttcgcaaaaatttgt
aTTCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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ctacacggtcacgtgattcaaaagttagattttacatattagtcaaaaag
atttatccttacttggtcacatgacttgaaagttagatttcgcagatcag
gcaaaataatttatccttacttggtcacatgacttgaaagttagattttg
cagatctgtcaaaataatttatccttacttggtaacatgacttgaaagtt
agattttgcagatcagtcaaaaaaatttatctttacttggtcacatgact
tgacttgaaagttagattttgcagatcagtcaaaaaaatgtatccttact
tggtcacatgacttgaaagttatattttgcagatcagtcaaaaaaaatta
tccttacttggtcacatgacttgaaagttagatttcgcagatcaggcaaa
aaaatttatcctttcttggtcacatgacttgaaagttagattttgcagat
cagtcaaacNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNTATCCTTACTTGgccacatgacttgaaagttagattttgcaggtcag
tcaaaaaaatttatccttacttggtcacatgacttgaaagttagatcttg
cagatcagtcaaaaaaaaaattatccttacttggtcacatgacttgaaag
ttagatttcgcagatcaggcaaaaaaaattatccttacttggtcacatga
cttgaaagttagattttgcagatcagtcaaaaagatttatccttacttgg
tcacatgaattgaaagttagattttgatgttttttatttacctcTTCGCC
TATCATTTTCACACCTAACGGTAATTACTTTATGTATaattctagaaaaa
tatatctgtcaatcaatttgccatattttattcaaagatatctgtcaatc
aacttATTAGCTTGCATAATAGCATATGTTACGTCATGTTGTTTAAATGA
TTAACAATAATCTAGTAGAAACCATGTATATTtagctgtttaatttttaa
gcatacattatgacgtagaaaagaaaataacaataggagacgaagtaagg
atatgtgacgaagtagtgctatgcacagggggtactagggttggtgaatg
aggggtatgtgcggaagggacctccgaaaaccgacccttagagagaccaa
attttagtgaaaaagtgacccttagagagacattttcgaaaaattttctc
tgattttcaaaattttcctacACTTAGTGagaattttttgtaattttttc
tctcaaaatcaaaatttttttctaaaaatcgtgatttttcccacccNGTG
TTGTTTTATTTGTTCGCTAGCGTACCATGATACCCACGttataaagagaa
aaaaaacccTTACTAACACTACAGTAGTTACTTTCAATTTTCTATTACGT
TTAGAATCCGTGCACCGAAAATCTGAATTTATGCGAGCACGGGAGTACCT
GTGCACCTGATCGTTTGAAGAAAACATACGAATGCCTTCTTTGCTTGGCT
CCTTATACTGGCTTACATTGCAATGAAACAGGTAAAGCCCACAAttgcgg
ctagttcgaaacgcaggtcacaggtcacaccACAAATtacaacaaaatct
tttttcatgctcaataggTGCTGACGTCATTATTTCAATAATTGTCGATT
TGTGTCAGTTTGTCAATATTGGAGGGTTGAATCATTCATTGTTGATTTGC
CCATGAAACCTTTTACATAGCATACTTTGTATACAACGTTCCCATTGCAT
AATATTTCAAGAAACATGTTTTGAATTATATGCTACGAGTGCAGTACAGT
TTTCCGTTCTGTAGTTTGTATAACcagtgacctgtgacctgcgttacGCA
CTAAGTGCTATAAATGGATACAAAGATAATGGTTGTTAGTCCATTTCAAA
TGATTCGTACATGTCATGACATGACATCCCCCTTTCTATTCAATTTAGAG
GATAAAATGCATATGTACAGGTTTCCCTTCGAGAAAGAcactaaaaatct
tttttgtcatAATTGACTTGAATTTATATTgcttttgtctttttaaaacT
TCACTACAAAAAGGGCCGGTAGGTAATAAAAGCACGAATCCCATGAAACA
GAAAACGGAAGCCTGCCTTATTTCGATACATTTCTAACGTGCTTTAATCT
TTTTTTAGTTTGTTGAATGAAAACTCCTTGTAAAACTTATGAACCACTTT
TCTTGTTCAAAATATCAATTGTAAAGAAATTCTTTCTATCGTTGTTTCTA
TTTCTCGGTTTCTCAGCAACAAGCCAAGTATTATGCATGCAGGTGGATCT
TTTTATTCTTGTTATAGATGAtctaaagattttttgaaattcgaagCACC
CCTCGACAACCTTGAAACATCTTACGAATGCGAGCAGTGCCTAAACATGT
AAATCTTTACTATTAATGAACACCATGAATTTTTATTTAATCTTTTAGGT
CCGCCGACCCCTCCGACAGTTAGCCAAGGTAATCAATTTTGAATTAAAGG
TTTAAATATTCCAAACAACGATTGAACCTATTCTCATCTTTGGTCTCTTT
CTAGAAAGCTGGAAAAagaacttaagggctctgaccatagtcggaaaatt
gattttagtatctgaacatgaaagttatgttttaacacttttaacaaaga
attgcctttataaaattgctttttaataaaaacccttaagagtaattaag
aacttaattgcaaaaatgacgttatgaactttaaaaagacgttaataata
tgttgcatcaccttcttttataaaaagactgtttttttaagcaaaatcca
gatgaaaaattgatgaaaatccactattttgaagattttgagacaaagaa
gcatttaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNcggtaaaagatacaccatctact
gtgaaaattttttcaaaatgttttttcttcgccgaaactaagctcttcaa
agttgaaatactcttccttgcaaaagtcttcattttcttcttctttttca
atgcaatttttgaattctcagaatcaggaatagtttgtctaacagaaaat
gtataacatgccatagttttgttggttacatcagtcagaaaacacatttt
aaacacggcaattatgaaaaattcactatggtcagagcccttaatggCAC
ATATTTAAGGCTCCTTGGAAAAATTTATAACCTTTCTTGGTGCGATTGCC
AGTTAAAAGCTATTATCTATTGGTAAATCGGACCGATTTCCTTGATTTTG
AAGGCAAAAAGAGTTCAACTCAATTGAAACTGATTGCGTACATCTTCAGA
ATCTTCTTTATTTCTCTTGAAACtataattttcaaaagagtGGTCAAGAA
AATTTACTTTTATGAAAGTGGTTTGTAGAGATACTGGTGGGACCGCGATT
CATGTTGCGCCAGAGATTGGGGATccatctgacagggtcccaaattcaCC
AATCATTTagatctgacagggtccactttttaAACTCAAACACCACGATC
CCGTCGGCCATCAACGTCAGTTCTCCCTCTGGAGATGAACCTGGATTAGC
TCAATTTCAAGAAGTGTATAAGATTTGCAGTATTAGAAATTAGATTTAGA
GCGTAAAACACCTTAACCATCCTTGAAAATAAGAAGAGGTTAAGAAAGAA
ATAAGAACAGCTGAGAGGCAAGccagtaaaattaaaaaaaagcaatAATT
CTCTCCAACAAAAATCGTTTTAGATATTTTGGATGGTAAGAACAGCTCAT
GCAGAACACTCAAGAAGTATTACGACATATCTGTCCACAAAACAATACAA
ACTATCTACCCTTGGAGGGATCAAAGAAACATTACCGTAGTTTGCCATGG
TAAGTGAAAAAAAAGTAGATTTCATTCGGTCTACATATTAAACGCTAATT
ATTTTGCTTGCATTTTCAACTAGTGCTTCAAATTCTAACCATTGCCGCCC
CCACTGTTGAAATAATAATTCAGAgcaaaataatttacaaaagaaaaaaa
catttttttgaatagGCCgataaaaaatgaactttttattcTTAATTTAG
TCCTATGAATTTCATTATTAGTGTTAATGCACTTTGAAGCTTCGCAATTC
cagtttctatttttttttccgtagaACTCTTAAACTGGGAATTACAACCT
CTAGAAGGAGCTTGTTTTAGTCCAAAAACTCtgttttttactttcttttc
caCTTCAACGAGCCACCTTCTATAGGCTTTTCCTTGTGGAAACGATGTCA
ATACAATTAGACGGATTCCTTTGAGAGTGATTTtcatacagtgtgtccca
aaaagcCAACAAATCTTTCATATAAagtgaaatttaataaaaaactgatt
ttctaAGCCAGACTAGATGATTACAATTTTATCTTCTCAATCAATAGATA
TCTAATTCCCAAGAAAATCAGGTTTAGTCataaaattttgtataaataat
tAAGACTTTACGAAATTTGTCCGCATTTTTTAAGACATACTGTATTATAC
TGTATTATTATTTATATGTTATTTTTCGTATATTTGACCATTGAACATTG
GATAAGAATCACTCATTTCCTGAGCCatatttaggggggggggcgaaCCC
CAAGGCCCTTGAAATCTTTTAAGTGACGCAACCAAACCCGGTCTATTTCA
AAGAATGTATTATTTAAAGAATGTTTTGTAAGGAGTTTTTTTGCTAAGGC
GTGGGAAATTTTTTAGCactcaaataaaaatgttgacGTCGGCCTTAAGG
GTTTGCCCCTATTAATCAGCTTAAAAAGTTCTACCAGTCACTGTGGCTGT
GATATCAAATATTCTCCAATTCCCTTTTTAGGTGATCGAATGACAGTGAC
GAAAATTACGAATAGTAACTCGGAGATAAGAGGTAAATCCAACATACAAA
CAcactacacccccttctcacagacccggttggattttttcagccagtgc
cCATATAACGTTCGATGAAcattgaaacgacgttgtgtgccagctgagtG
GGGATAAAGACAACGGGCTGAAACATGATGGGGATGATTATTCCCATATT
TCTTATGGctagggatttcaattcttttgtcagaaaattcagtgggtaTG
GGAAAAATGgcataatattttaaaattgggGGTTAATTTTCCAGGGGGCG
AtgtattggaaaaatttttccagtgggaaggtaTACCAGTGgttttgtga
gaagggggtgtataaatTGTTCTATagatttaaaaatgttattgaagaag
tttttgttcttattcattttcaatcttcattttctgattttttttggatt
ttttttctcttgaaaataTTCCACTtctttatcttttcaacaagcacaaa
agcGCTACTCAATTGTATGTGCTAAAAAGTATGAATTTTAGGAGAAACCC
AAGCTAACCGTTAATCATTTCTGAGGACACTCAAATCTacgaaattcttg
aaatttaatcccctgggaacggttgttcaaaagtcgaTTAGATTAGAAAT
TTGAATACTCAAtcatgaaaatggccaaaaaattaagaatacagTAAGAA
AACCCATAAGATGGTTTGGATGGTTTtcaacaaaaaagttaagaacattc
atgATGAGATGAAATGAAGCAAcattataaaaagaaaggtgTATAGTGAA
TTTCTCATCCCACGTTTTTTGTTCAAAGGAATTAGCAAATTCCCACCATG
CTTTGAGAATGACGTTATATATTTCTTTTTGTCGTAGATTTGAGCGATAT
TGATTTGGTTGATGGTCTTGATTTGACGAATGGATTGTTCAGAGCAAAAG
CATCATTCTTGAATAATTTACANtgctccatcccaccaacacaagaaaaa
agtgcgtgtctcatggtttcttttttgtttcatgggacaaaaagtgaggg
aaatacccaaaagacacgctgattttgttcttgggacaaaagtgagagaa
gcgcaaatgttattaaaagaaaaatggggtggagacacgagaaagcgttt
caggttggtggcatggagcatgttgcattgcaccaatgcGAAAGAAAACT
TCTAGTCTTCCCAAGCCTTAAGACGTGAAGTCCTTGTTTTTGTTATATCT
GGAAGATGTTTTTCAGTTTAACTAAGTTACGTAAAGTCCGTCTAGTTTCA
TCTAGATAACTTTTTTTCNAAATGATTTGGTAAATTACCGCCAAGCTAAA
TATTTTACAGGTAGAAATTCTTTAACAATCTGTAAACTATAACAGCTTGA
AGGTATTTCATGGAGTTTGGTAATTCGTTACAAGCTATATTCAGGGTTGG
AGGGCGTAGTGGTGTGGTGGTCATCGCTCTTAACTCCCAACTGGGAGGTC
AGAGTTCGATCCCCACTGTAGTACTACGGTTCATTTGGCAAATGAACATA
CCTTTACCCGGATCAACCCATatcatgtgaggggaattggatACCACTAC
TCtcatacaagagtgtgggtgataTACCACTCATCCCGTTCTGCGCCTGC
GACgagctattcatgatattcatgacgtaatgttttctacggaaatcccc
ctgttttagccagtagtggcaaatttaagcaagacaaaagttgtataaaa
tttgccactactggcaaaaaccggggtctttccgtagaaaacatNAagaa
gctctgtgtgcagtgcgtgttatgcttttagctagattttgacacacttt
ttgacatccactgaattgatagaaaatttgaattattatttactgcaaat
ttcgaaatttttttcaNTCATCCCGTTCTGCGCCTGCGACgagctattca
tgatattcatgacgtaatgttttctacggaaatccccctgttttagccag
tagtggcaaatttaagcaagacaaaagttgtataaaatttgccactactg
gcaaaaaccggggtctttccgtagaaaacatttcgtcatgaatatcatga
atatgctCTCTCCCGCGCAGCTCACTATGCATCATGATATCTGTGTCTCG
CGTGCACAGAACCAGCGGTGTCCGGACAACACTAAGCGTTCCAACTTGAA
AAAGGGGAAATTCTTACTTCGTAAGGATAGTTGGACCCATTCCCCAGAAG
GGAGGGCTCGTATCATACAGGGCAGGAATACATGAAGGGTTCCCCGGAAG
CCATTATTCGTGatttatattaatattttttatattttgcgaGTTGATAA
CTCACAAACCTATTCTTTGGGACATATTCGGGAGTTAATATAACCCATGA
TGCCAGGGGAGGTACTAGGGTCGGCAGATTAGTGGTATGTTCGGATGGAA
CCTCCGaaaaccaacccttagagagcctaaattttgctaaaaaggtgacc
cttagagagatttttttacaattttttctctcgaaatcaaaagaaatttc
ctaaaaatcgtgaattttccgagctttagagagactttgaaaggtgaaaa
aaccgacccttaccgtccgcacatacccagtaCCTATTTTTACCTAAGTA
GCGGGCCATGATGTTATTTCTAAGAATAATTTCACGAGCTATCAACTCAC
AAAAATACTCTTCGggatgctccatcccaccaacacaagaaaaaagtgcg
tgtctcatggtttcttttttgtttcatgggacaaaaagtgagggaaatac
ccaaaagacacgctgattttGTTCTTGGGACAAAAGTGAGAGAAGCGCAA
ATGTTATTAAAAGAAAAATGGGGTGGAGACACGAGAAAGCGTTTCAGGTT
GGTGGCATGGAGCATGTTGCATTGCACCAATGCGAAAGAAAACTTCTAGT
CTTCCCAAGCCTTAAGACGTGAAGTCCTTGTTTTTGTTATATCTGGAAGA
TGTTTTTCAGTTTAACTAAGTTACGTAAAGTCCGTCTAGTTTCATCTAGA
TAACTTTTTTTCACAACTACTTTATTTTTATCGTCACAAACAAAGGTTTG
TACTTATTTGAGGTTATCGATTTTTTAGATGAAACTGAACGACACCACAG
CAAAACATTTAACTTAATAGATCACGAATAGATCACGTTTTGAATATCCg
acaattatttttttcataggtGATAACTATTGGAAACCTGTTGTCACTCA
TTGGGCCTGGGTACCAAACAGCCTGGGTTACACGTGGGATCCAGAAGATG
GTAAACTTTCAACAAGGTCATCAGTTCTTAAAGAGGATAGACCcttcaaa
aatgttgttatTGGAAATGATGGGAAACATTTTACGTTTTCTGATGACCA
ACCAAAACAATGTTTTGGAAACGTTTGGGACTGGTTTAAGATTGAAGTTg
tttgaaattctttaaaaacgtcaaaaaacttACCAGAAACCATGTTTTCC
ACCTATGTATGACACAATGGTGAAAAACtagataaaaaacaaactttata
tCAACAAAATAATCAACTGATGGCAGGAGATGTGGATTCCACATATGTCA
AAACATTTCGTAAAAAGATTAGATTGCAggaacatttttttaaacgaGTA
CATATATTTAAAGTTGTTACAGTTTTAAAGAAAACGGACACTACTGCCAG
CTTCACGCTTAATGCGATCCTTTGGTTCAGTACCGTGAACACCGAAGCTT
CTCTGAAGTTAAGCTGTGGAGAcgtactgtaaaaattttatcgtGCATGT
AATGAATCGAAGATGGAGAGTACatattaaccctattcatactattatac
taggcttttaggggtggTTCAAAACTAGTGGAGGGGGGCTTTTcgtgtac
caccccttaacttttgttCTAGAGGGtctttttggttgaaatttggcaca
caagatccttgtcacataaggtaacttttaacgaaaatttttttttgatg
ac

Coding sequence (CDS) from alignment at sc0000806:111583..126884+

>TCONS_00030298 ID=TCONS_00030298|Name=TCONS_00030298|organism=Clytia hemisphaerica|type=CDS|length=5472bp|location=Sequence derived from alignment at sc0000806:111583..126884+ (Clytia hemisphaerica)
atgTATTCCTACTTCATTTTATTATTCAATCTACCGACGCttattatttc
aaaacttttatggGTAGCAGAAAATCGTACTGTTTTAACTAACAACAAAC
TGATTACAATCCAATCGATGCGATTCAAGAAAACCCCATTTCCATACTAC
GGAAAAAACCCTCTTATTAGTAAGTCGGGTAAGAGTAAAAGGCAATGTGC
TGAGATATGTATGGACGATGAGCAGTGTATTTCTTGGTCCTCTGATGGTG
ATCTTTGTTTGTGTTATTCGATAAGCTTTCTTGCTGGTCAACAAGCTACT
ACAAATACATTCTCAGATGAATGGTCTTCGTTCGAAGTCATGAATCCGTG
CACCGAAAATCTGAATTTATGCGAGCACGGGAGTACCTGTGCACCTGATC
GTTTGAATAAAACATACGAATGCCTTCTTTGCTTGGCTCCGTATACTGGA
TTACATTGCAATGAAACAGGTCCGCCGACCCCTCCGACAGTTAGCCAAGA
TATTTTGGATGGTAAGAACAGCTCATGCAGAACACTCAAGAAGTATTACG
ACATATCTGTCCACAAAACAATACAAACTATCTACCCTTGGAGGGATCAA
AGAAACATTACCGTAGTTTGCCATGGTGATCGAATGACAGTGACGAAAAT
TACGAATAGTAACTCGGAGATAAGAGgtGATAACTATTGGAAACCTGTTG
TCACTCATTGGGCCTGGGTACCAAACAGCCTGGGTTACACGTGGGATCCA
GAAGATGGTAAACTTTCAACAAGGTCATCAGTTCTTAAAGAGGATAGACC
cttcaaaaatgttgttatTGGAAATGATGGGAAACATTTTACGTTTTCTG
ATGACCAACCAAAACAATGTTTTGGAAACGTTTGGGACTGGTTTAAGATT
GAAGTTgtttgaatgTATTCCTACTTCATTTTATTATTCAATCTACCGAC
GCttattatttcaaaacttttatggGTAGCAGAAAATCGTACTGTTTTAA
CTAACAACAAACTGATTACAATCCAATCGATGCGATTCAAGAAAACCCCA
TTTCCATACTACGGAAAAAACCCTCTTATTAGTAAGTCGGGTAAGAGTAA
AAGGCAATGTGCTGAGATATGTATGGACGATGAGCAGTGTATTTCTTGGT
CCTCTGATGGTGATCTTTGTTTGTGTTATTCGATAAGCTTTCTTGCTGGT
CAACAAGCTACTACAAATACATTCTCAGATGAATGGTCTTCGTTCGAAGT
CATGAATCCGTGCACCGAAAATCTGAATTTATGCGAGCACGGGAGTACCT
GTGCACCTGATCGTTTGAATAAAACATACGAATGCCTTCTTTGCTTGGCT
CCGTATACTGGATTACATTGCAATGAAACAGGTCCGCCGACCCCTCCGAC
AGTTAGCCAAGATATTTTGGATGGTAAGAACAGCTCATGCAGAACACTCA
AGAAGTATTACGACATATCTGTCCACAAAACAATACAAACTATCTACCCT
TGGAGGGATCAAAGAAACATTACCGTAGTTTGCCATGGTGATCGAATGAC
AGTGACGAAAATTACGAATAGTAACTCGGAGATAAGAGgtGATAACTATT
GGAAACCTGTTGTCACTCATTGGGCCTGGGTACCAAACAGCCTGGGTTAC
ACGTGGGATCCAGAAGATGGTAAACTTTCAACAAGGTCATCAGTTCTTAA
AGAGGATAGACCcttcaaaaatgttgttatTGGAAATGATGGGAAACATT
TTACGTTTTCTGATGACCAACCAAAACAATGTTTTGGAAACGTTTGGGAC
TGGTTTAAGATTGAAGTTgtttgaatgTATTCCTACTTCATTTTATTATT
CAATCTACCGACGCttattatttcaaaacttttatggGTAGCAGAAAATC
GTACTGTTTTAACTAACAACAAACTGATTACAATCCAATCGATGCGATTC
AAGAAAACCCCATTTCCATACTACGGAAAAAACCCTCTTATTAGTAAGTC
GGGTAAGAGTAAAAGGCAATGTGCTGAGATATGTATGGACGATGAGCAGT
GTATTTCTTGGTCCTCTGATGGTGATCTTTGTTTGTGTTATTCGATAAGC
TTTCTTGCTGGTCAACAAGCTACTACAAATACATTCTCAGATGAATGGTC
TTCGTTCGAAGTCATGAATCCGTGCACCGAAAATCTGAATTTATGCGAGC
ACGGGAGTACCTGTGCACCTGATCGTTTGAATAAAACATACGAATGCCTT
CTTTGCTTGGCTCCGTATACTGGATTACATTGCAATGAAACAGGTCCGCC
GACCCCTCCGACAGTTAGCCAAGATATTTTGGATGGTAAGAACAGCTCAT
GCAGAACACTCAAGAAGTATTACGACATATCTGTCCACAAAACAATACAA
ACTATCTACCCTTGGAGGGATCAAAGAAACATTACCGTAGTTTGCCATGG
TGATCGAATGACAGTGACGAAAATTACGAATAGTAACTCGGAGATAAGAG
gtGATAACTATTGGAAACCTGTTGTCACTCATTGGGCCTGGGTACCAAAC
AGCCTGGGTTACACGTGGGATCCAGAAGATGGTAAACTTTCAACAAGGTC
ATCAGTTCTTAAAGAGGATAGACCcttcaaaaatgttgttatTGGAAATG
ATGGGAAACATTTTACGTTTTCTGATGACCAACCAAAACAATGTTTTGGA
AACGTTTGGGACTGGTTTAAGATTGAAGTTgtttgaatgTATTCCTACTT
CATTTTATTATTCAATCTACCGACGCttattatttcaaaacttttatggG
TAGCAGAAAATCGTACTGTTTTAACTAACAACAAACTGATTACAATCCAA
TCGATGCGATTCAAGAAAACCCCATTTCCATACTACGGAAAAAACCCTCT
TATTAGTAAGTCGGGTAAGAGTAAAAGGCAATGTGCTGAGATATGTATGG
ACGATGAGCAGTGTATTTCTTGGTCCTCTGATGGTGATCTTTGTTTGTGT
TATTCGATAAGCTTTCTTGCTGGTCAACAAGCTACTACAAATACATTCTC
AGATGAATGGTCTTCGTTCGAAGTCATGAATCCGTGCACCGAAAATCTGA
ATTTATGCGAGCACGGGAGTACCTGTGCACCTGATCGTTTGAATAAAACA
TACGAATGCCTTCTTTGCTTGGCTCCGTATACTGGATTACATTGCAATGA
AACAGGTCCGCCGACCCCTCCGACAGTTAGCCAAGATATTTTGGATGGTA
AGAACAGCTCATGCAGAACACTCAAGAAGTATTACGACATATCTGTCCAC
AAAACAATACAAACTATCTACCCTTGGAGGGATCAAAGAAACATTACCGT
AGTTTGCCATGGTGATCGAATGACAGTGACGAAAATTACGAATAGTAACT
CGGAGATAAGAGgtGATAACTATTGGAAACCTGTTGTCACTCATTGGGCC
TGGGTACCAAACAGCCTGGGTTACACGTGGGATCCAGAAGATGGTAAACT
TTCAACAAGGTCATCAGTTCTTAAAGAGGATAGACCcttcaaaaatgttg
ttatTGGAAATGATGGGAAACATTTTACGTTTTCTGATGACCAACCAAAA
CAATGTTTTGGAAACGTTTGGGACTGGTTTAAGATTGAAGTTgtttgaat
gTATTCCTACTTCATTTTATTATTCAATCTACCGACGCttattatttcaa
aacttttatggGTAGCAGAAAATCGTACTGTTTTAACTAACAACAAACTG
ATTACAATCCAATCGATGCGATTCAAGAAAACCCCATTTCCATACTACGG
AAAAAACCCTCTTATTAGTAAGTCGGGTAAGAGTAAAAGGCAATGTGCTG
AGATATGTATGGACGATGAGCAGTGTATTTCTTGGTCCTCTGATGGTGAT
CTTTGTTTGTGTTATTCGATAAGCTTTCTTGCTGGTCAACAAGCTACTAC
AAATACATTCTCAGATGAATGGTCTTCGTTCGAAGTCATGAATCCGTGCA
CCGAAAATCTGAATTTATGCGAGCACGGGAGTACCTGTGCACCTGATCGT
TTGAATAAAACATACGAATGCCTTCTTTGCTTGGCTCCGTATACTGGATT
ACATTGCAATGAAACAGGTCCGCCGACCCCTCCGACAGTTAGCCAAGATA
TTTTGGATGGTAAGAACAGCTCATGCAGAACACTCAAGAAGTATTACGAC
ATATCTGTCCACAAAACAATACAAACTATCTACCCTTGGAGGGATCAAAG
AAACATTACCGTAGTTTGCCATGGTGATCGAATGACAGTGACGAAAATTA
CGAATAGTAACTCGGAGATAAGAGgtGATAACTATTGGAAACCTGTTGTC
ACTCATTGGGCCTGGGTACCAAACAGCCTGGGTTACACGTGGGATCCAGA
AGATGGTAAACTTTCAACAAGGTCATCAGTTCTTAAAGAGGATAGACCct
tcaaaaatgttgttatTGGAAATGATGGGAAACATTTTACGTTTTCTGAT
GACCAACCAAAACAATGTTTTGGAAACGTTTGGGACTGGTTTAAGATTGA
AGTTgtttgaatgTATTCCTACTTCATTTTATTATTCAATCTACCGACGC
ttattatttcaaaacttttatggGTAGCAGAAAATCGTACTGTTTTAACT
AACAACAAACTGATTACAATCCAATCGATGCGATTCAAGAAAACCCCATT
TCCATACTACGGAAAAAACCCTCTTATTAGTAAGTCGGGTAAGAGTAAAA
GGCAATGTGCTGAGATATGTATGGACGATGAGCAGTGTATTTCTTGGTCC
TCTGATGGTGATCTTTGTTTGTGTTATTCGATAAGCTTTCTTGCTGGTCA
ACAAGCTACTACAAATACATTCTCAGATGAATGGTCTTCGTTCGAAGTCA
TGAATCCGTGCACCGAAAATCTGAATTTATGCGAGCACGGGAGTACCTGT
GCACCTGATCGTTTGAATAAAACATACGAATGCCTTCTTTGCTTGGCTCC
GTATACTGGATTACATTGCAATGAAACAGGTCCGCCGACCCCTCCGACAG
TTAGCCAAGATATTTTGGATGGTAAGAACAGCTCATGCAGAACACTCAAG
AAGTATTACGACATATCTGTCCACAAAACAATACAAACTATCTACCCTTG
GAGGGATCAAAGAAACATTACCGTAGTTTGCCATGGTGATCGAATGACAG
TGACGAAAATTACGAATAGTAACTCGGAGATAAGAGgtGATAACTATTGG
AAACCTGTTGTCACTCATTGGGCCTGGGTACCAAACAGCCTGGGTTACAC
GTGGGATCCAGAAGATGGTAAACTTTCAACAAGGTCATCAGTTCTTAAAG
AGGATAGACCcttcaaaaatgttgttatTGGAAATGATGGGAAACATTTT
ACGTTTTCTGATGACCAACCAAAACAATGTTTTGGAAACGTTTGGGACTG
GTTTAAGATTGAAGTTgtttga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_017347XLOC_017347Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00030298-proteinTCONS_00030298-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00030298-exon-sc0000806-1491911889:111583..111967TCONS_00030298-exon-sc0000806-1491911889:111583..111967Clytia hemisphaericaexon
TCONS_00030298-exon-sc0000806-1510915933:111583..111967TCONS_00030298-exon-sc0000806-1510915933:111583..111967Clytia hemisphaericaexon
TCONS_00030298-exon-sc0000806-1575043694:111583..111967TCONS_00030298-exon-sc0000806-1575043694:111583..111967Clytia hemisphaericaexon
TCONS_00030298-exon-sc0000806-1491911889:112419..112545TCONS_00030298-exon-sc0000806-1491911889:112419..112545Clytia hemisphaericaexon
TCONS_00030298-exon-sc0000806-1510915933:112419..112545TCONS_00030298-exon-sc0000806-1510915933:112419..112545Clytia hemisphaericaexon
TCONS_00030298-exon-sc0000806-1575043694:112419..112545TCONS_00030298-exon-sc0000806-1575043694:112419..112545Clytia hemisphaericaexon
TCONS_00030298-exon-sc0000806-1491911889:120331..120360TCONS_00030298-exon-sc0000806-1491911889:120331..120360Clytia hemisphaericaexon
TCONS_00030298-exon-sc0000806-1510915933:120331..120360TCONS_00030298-exon-sc0000806-1510915933:120331..120360Clytia hemisphaericaexon
TCONS_00030298-exon-sc0000806-1575043694:120331..120360TCONS_00030298-exon-sc0000806-1575043694:120331..120360Clytia hemisphaericaexon
TCONS_00030298-exon-sc0000806-1491911889:121756..121881TCONS_00030298-exon-sc0000806-1491911889:121756..121881Clytia hemisphaericaexon
TCONS_00030298-exon-sc0000806-1510915933:121756..121881TCONS_00030298-exon-sc0000806-1510915933:121756..121881Clytia hemisphaericaexon
TCONS_00030298-exon-sc0000806-1575043694:121756..121881TCONS_00030298-exon-sc0000806-1575043694:121756..121881Clytia hemisphaericaexon
TCONS_00030298-exon-sc0000806-1491911889:122864..122914TCONS_00030298-exon-sc0000806-1491911889:122864..122914Clytia hemisphaericaexon
TCONS_00030298-exon-sc0000806-1510915933:122864..122914TCONS_00030298-exon-sc0000806-1510915933:122864..122914Clytia hemisphaericaexon
TCONS_00030298-exon-sc0000806-1575043694:122864..122914TCONS_00030298-exon-sc0000806-1575043694:122864..122914Clytia hemisphaericaexon
TCONS_00030298-exon-sc0000806-1491911889:126102..126884TCONS_00030298-exon-sc0000806-1491911889:126102..126884Clytia hemisphaericaexon
TCONS_00030298-exon-sc0000806-1510915933:126102..126884TCONS_00030298-exon-sc0000806-1510915933:126102..126884Clytia hemisphaericaexon
TCONS_00030298-exon-sc0000806-1575043694:126102..126884TCONS_00030298-exon-sc0000806-1575043694:126102..126884Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000806supercontigsc0000806:111583..126884 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0524043	0.0893452	0.0552909	0.0499013	0	0	0	0	0	0.337435	0	0.342414	0.826959	0.946466	0.35089	0.466861	0.186343	0.312632	2.12152	1.07898	0.831332	0.754166	0.198188	1.04926	1.05497	0.721351	0.216945	0	10.4604	5.70986
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000742EGF-like_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00030298 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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