TCONS_00030295 (transcript) - C. hemisphaerica

Overview
NameTCONS_00030295
Unique NameTCONS_00030295
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length951

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00030295 ID=TCONS_00030295|Name=TCONS_00030295|organism=Clytia hemisphaerica|type=transcript|length=951bp
AGACAGGCTTCGCTGACATTAATTTCTgcactttgatgtaaaaatgTATT
CCTACTTCATTTTATTATTCAATCTACCGACGCttattatttcaaaactt
ttatggGTAGCAGAAAATCGTACTGTTTTAACTAACAACAAACTGATTAC
AATCCAATCGATGCGATTCAAGAAAACCCCATTTCCATACTACGGAAAAA
ACCCTCTTATTAGTAAGTCGGGTAAGAGTAAAAGGCAATGTGCTGAGATA
TGTATGGACGATGAGCAGTGTATTTCTTGGTCCTCTGATGGTGATCTTTG
TTTGTGTTATTCGATAAGCTTTCTTGCTGGTCAACAAGCTACTACAAATA
CATTCTCAGATGAATGGTCTTCGTTCGAAGTCATGAATCCGTGCACCGAA
AATCTGAATTTATGCGAGCACGGGAGTACCTGTGCACCTGATCGTTTGAA
GAAAACATACGAATGCCTTCTTTGCTTGGCTCCTTATACTGGCTTACATT
GCAATGAAACAGGTCCGCCGACCCCTCCGACAGTTAGCCAAGATATTTTG
GATGGTAAGAACAGCTCATGCAGAACACTCAAGAAGTATTACGACATATC
TGTCCACAAAACAATACAAACTATCTACCCTTGGAGGGATCAAAGAAACA
TTACCGTAGTTTGCCATGGTGATCGAATGACAGTGACGAAAATTACGAAT
AGTAACTCGGAGATAAGAGATTTGAGCGATATTGATTTGGTTGATGGTCT
TGATTTGACGAATGGATTGTTCAGAGCAAAAGCATCATTCTTGAATAATT
TACANtgctccatcccaccaacacaagaaaaaagtgcgtgtctcatggtt
tcttttttgtttcatgggacaaaaagtgagggaaatacccaaaagacacg
ctgattttgttcttgggacaaaagtgagagaagcgcaaatgttattaaaa
g
Run BLAST on NCBI

transcript from alignment at sc0000806:111583..124001+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00030295 ID=TCONS_00030295|Name=TCONS_00030295|organism=Clytia hemisphaerica|type=transcript|length=12419bp|location=Sequence derived from alignment at sc0000806:111583..124001+ (Clytia hemisphaerica)
AGACAGGCTTCGCTGACATTAATTTCTgcactttgatgtaaaaatgTATT
CCTACTTCATTTTATTATTCAATCTACCGACGCttattatttcaaaactt
ttatggGTAGCAGAAAATCGTACTGTTTTAACTAACAACAAACTGATTAC
AATCCAATCGATGCGATTCAAGAAAACCCCATTTCCATACTACGGAAAAA
ACCCTCTTATTAGTAAGTCGGGTAAGAGTAAAAGGCAATGTGCTGAGATA
TGTATGGACGATGAGCAGTGTATTTCTTGGTCCTCTGATGGTGATCTTTG
TTTGTGTTATTCGATAAGCTTTCTTGCTGGTCAACAAGCTACTACAAATA
CATTCTCAGATGAATGGTCTTCGTTCGAAGTCATGGTAAGtcaaacaacg
ttgtttaaacATTTAActaacattcacaacgtccatataacgttatatga
aggTTTTGATAACAACTGGGGAGGGGGTACATGGAAAAAAGGGTGtaggg
tatgtgcgagccatcaTAGTCTGACCAACTTCGCAATGCTGTAACTTTTC
ATCTAAGAAAGATACGTAAAATCTGAACACAGATTTGAAAAATTAGCAAT
GTTCAAAGTTTCTAAATAGTCTAATGTCATGGTTTTTAAAACAGTAGAAA
CAGTGTGTCCACACACTTTAGTATCTATGGTGATATCGCTAGGTGCCTAG
CGGGGAAGGACATTTTTTTTGTCAGTAGTGTGTTGTTTTATTTGTTCGCT
AGTGTACCATGATACCCACGttataaagagaaaaaaacccCTTACTAACA
CCACAGTAATTACTTTCAATTTTCTATCACGTTTAGAATCCGTGCACCGA
AAATCTGAATTTATGCGAGCACGGGAGTACCTGTGCACCTGATCGTTTGA
ATAAAACATACGAATGCCTTCTTTGCTTGGCTCCGTATACTGGATTACAT
TGCAATGAAACAGGTAAAGCCCATAAttgcggctagttcgaaacgctggt
cacaggtcacaggtcacaggtcacaggtcccCGGGGGggtgtgcatagca
ctacttcgtcacatatccttacttcgtctcctattgttattttctctttt
acgtcataatatatgcatgaataATCGCATAAATTNNNNNNNNNNNNNNN
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tgcattgcgtaagagttctttaaaaatttcgcaaaaatttatattcccac
taaatggtcacgtgatttaaaagttagattttacagattagtcaaaaaaa
ctttcattacatggtcacatgattttaaagttagattttgcagatcagtc
aaaaaaatgtatccttacttggtcacatgacttgaaagttaNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNagtcaaaaaaatttatccttacttggtcaca
tgacttgaaagttagattttgcagatcagtcaaaaagatttatccttact
tggtcacatggcttgaaagttagatttcgcagatcaggtaaaaaaaatta
tccttatttggtcacaaTGCATTGCGTATGAGTTATATTTAAAACNAATC
AAATCACTAATATATATGTAATATTTTGAAGAGTGAGTGCACGATGAACA
ATCGTGATTGAATATCTAAAGAAATGTCTCGAAGAAACGATAATACGCAT
GCACGTGCTCTACACATTGTCAGAAAAAAACTTCTGAAGCAAATGGCTTT
TTTTCGTGACGAAATAAAACAAGAaagtatgaaaagaaaaagcaaaatta
ttattttttacgtttttattcTGCTTTTTGGAAATGTAATCAAAACCGAG
AACCGTCTTATAGAACACGGCTATAGNacttggtcacatgacttgaaagt
tagattttgcagatcagtcaaaaaaaattatccttacttggtcacatgac
ttgaaagttagattttgcagatcaggtaaaaaaaattatccttatttggt
cacaaTGCATTGCGTATGAgttatatttaaaattttgcaaaaattcataT
TCCCACTACaaggtcacgtgatttaaaagttaaattttacagatcagtca
aaaagataatccttacttggtcacatgacttgaaagttagattttgcaga
tcagtcaataagatttatccttacttggtcacatgactttaaagttagat
tttgcagatcagtcaaaaaaaattatccttacttggtcacatgacttgaa
agttagattttgcagatctgTCAAAAACatgtatccttacttggtcacat
gacttgaaagttagattttgcagatcaggcaaaaaaatttatccttactt
ggtcacatgacttgaaagttagatttcgcagatcaggtaaaaaaaattat
ccttatttggtcacaaTGCATTGCATATGAgttatatttaaaattttgca
aaaattcataTTCCCACTACaaggtcacatgacttgaaagttagattttg
cagatcagtcaaaaagatttatccttacttggtcacatgacttgaaagtt
agatttcgcagatcaggcaaaataatttatccttacttggtcacatgact
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNtgaaagttagatttcgcagatcaggcaaaaaaaatttatccttactt
ggtcacgatgcattgtgtaagagttctttaaaaatttcgcaaaaatttgt
aTTCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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ctacacggtcacgtgattcaaaagttagattttacatattagtcaaaaag
atttatccttacttggtcacatgacttgaaagttagatttcgcagatcag
gcaaaataatttatccttacttggtcacatgacttgaaagttagattttg
cagatctgtcaaaataatttatccttacttggtaacatgacttgaaagtt
agattttgcagatcagtcaaaaaaatttatctttacttggtcacatgact
tgacttgaaagttagattttgcagatcagtcaaaaaaatgtatccttact
tggtcacatgacttgaaagttatattttgcagatcagtcaaaaaaaatta
tccttacttggtcacatgacttgaaagttagatttcgcagatcaggcaaa
aaaatttatcctttcttggtcacatgacttgaaagttagattttgcagat
cagtcaaacNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNTATCCTTACTTGgccacatgacttgaaagttagattttgcaggtcag
tcaaaaaaatttatccttacttggtcacatgacttgaaagttagatcttg
cagatcagtcaaaaaaaaaattatccttacttggtcacatgacttgaaag
ttagatttcgcagatcaggcaaaaaaaattatccttacttggtcacatga
cttgaaagttagattttgcagatcagtcaaaaagatttatccttacttgg
tcacatgaattgaaagttagattttgatgttttttatttacctcTTCGCC
TATCATTTTCACACCTAACGGTAATTACTTTATGTATaattctagaaaaa
tatatctgtcaatcaatttgccatattttattcaaagatatctgtcaatc
aacttATTAGCTTGCATAATAGCATATGTTACGTCATGTTGTTTAAATGA
TTAACAATAATCTAGTAGAAACCATGTATATTtagctgtttaatttttaa
gcatacattatgacgtagaaaagaaaataacaataggagacgaagtaagg
atatgtgacgaagtagtgctatgcacagggggtactagggttggtgaatg
aggggtatgtgcggaagggacctccgaaaaccgacccttagagagaccaa
attttagtgaaaaagtgacccttagagagacattttcgaaaaattttctc
tgattttcaaaattttcctacACTTAGTGagaattttttgtaattttttc
tctcaaaatcaaaatttttttctaaaaatcgtgatttttcccacccNGTG
TTGTTTTATTTGTTCGCTAGCGTACCATGATACCCACGttataaagagaa
aaaaaacccTTACTAACACTACAGTAGTTACTTTCAATTTTCTATTACGT
TTAGAATCCGTGCACCGAAAATCTGAATTTATGCGAGCACGGGAGTACCT
GTGCACCTGATCGTTTGAAGAAAACATACGAATGCCTTCTTTGCTTGGCT
CCTTATACTGGCTTACATTGCAATGAAACAGGTAAAGCCCACAAttgcgg
ctagttcgaaacgcaggtcacaggtcacaccACAAATtacaacaaaatct
tttttcatgctcaataggTGCTGACGTCATTATTTCAATAATTGTCGATT
TGTGTCAGTTTGTCAATATTGGAGGGTTGAATCATTCATTGTTGATTTGC
CCATGAAACCTTTTACATAGCATACTTTGTATACAACGTTCCCATTGCAT
AATATTTCAAGAAACATGTTTTGAATTATATGCTACGAGTGCAGTACAGT
TTTCCGTTCTGTAGTTTGTATAACcagtgacctgtgacctgcgttacGCA
CTAAGTGCTATAAATGGATACAAAGATAATGGTTGTTAGTCCATTTCAAA
TGATTCGTACATGTCATGACATGACATCCCCCTTTCTATTCAATTTAGAG
GATAAAATGCATATGTACAGGTTTCCCTTCGAGAAAGAcactaaaaatct
tttttgtcatAATTGACTTGAATTTATATTgcttttgtctttttaaaacT
TCACTACAAAAAGGGCCGGTAGGTAATAAAAGCACGAATCCCATGAAACA
GAAAACGGAAGCCTGCCTTATTTCGATACATTTCTAACGTGCTTTAATCT
TTTTTTAGTTTGTTGAATGAAAACTCCTTGTAAAACTTATGAACCACTTT
TCTTGTTCAAAATATCAATTGTAAAGAAATTCTTTCTATCGTTGTTTCTA
TTTCTCGGTTTCTCAGCAACAAGCCAAGTATTATGCATGCAGGTGGATCT
TTTTATTCTTGTTATAGATGAtctaaagattttttgaaattcgaagCACC
CCTCGACAACCTTGAAACATCTTACGAATGCGAGCAGTGCCTAAACATGT
AAATCTTTACTATTAATGAACACCATGAATTTTTATTTAATCTTTTAGGT
CCGCCGACCCCTCCGACAGTTAGCCAAGGTAATCAATTTTGAATTAAAGG
TTTAAATATTCCAAACAACGATTGAACCTATTCTCATCTTTGGTCTCTTT
CTAGAAAGCTGGAAAAagaacttaagggctctgaccatagtcggaaaatt
gattttagtatctgaacatgaaagttatgttttaacacttttaacaaaga
attgcctttataaaattgctttttaataaaaacccttaagagtaattaag
aacttaattgcaaaaatgacgttatgaactttaaaaagacgttaataata
tgttgcatcaccttcttttataaaaagactgtttttttaagcaaaatcca
gatgaaaaattgatgaaaatccactattttgaagattttgagacaaagaa
gcatttaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNcggtaaaagatacaccatctact
gtgaaaattttttcaaaatgttttttcttcgccgaaactaagctcttcaa
agttgaaatactcttccttgcaaaagtcttcattttcttcttctttttca
atgcaatttttgaattctcagaatcaggaatagtttgtctaacagaaaat
gtataacatgccatagttttgttggttacatcagtcagaaaacacatttt
aaacacggcaattatgaaaaattcactatggtcagagcccttaatggCAC
ATATTTAAGGCTCCTTGGAAAAATTTATAACCTTTCTTGGTGCGATTGCC
AGTTAAAAGCTATTATCTATTGGTAAATCGGACCGATTTCCTTGATTTTG
AAGGCAAAAAGAGTTCAACTCAATTGAAACTGATTGCGTACATCTTCAGA
ATCTTCTTTATTTCTCTTGAAACtataattttcaaaagagtGGTCAAGAA
AATTTACTTTTATGAAAGTGGTTTGTAGAGATACTGGTGGGACCGCGATT
CATGTTGCGCCAGAGATTGGGGATccatctgacagggtcccaaattcaCC
AATCATTTagatctgacagggtccactttttaAACTCAAACACCACGATC
CCGTCGGCCATCAACGTCAGTTCTCCCTCTGGAGATGAACCTGGATTAGC
TCAATTTCAAGAAGTGTATAAGATTTGCAGTATTAGAAATTAGATTTAGA
GCGTAAAACACCTTAACCATCCTTGAAAATAAGAAGAGGTTAAGAAAGAA
ATAAGAACAGCTGAGAGGCAAGccagtaaaattaaaaaaaagcaatAATT
CTCTCCAACAAAAATCGTTTTAGATATTTTGGATGGTAAGAACAGCTCAT
GCAGAACACTCAAGAAGTATTACGACATATCTGTCCACAAAACAATACAA
ACTATCTACCCTTGGAGGGATCAAAGAAACATTACCGTAGTTTGCCATGG
TAAGTGAAAAAAAAGTAGATTTCATTCGGTCTACATATTAAACGCTAATT
ATTTTGCTTGCATTTTCAACTAGTGCTTCAAATTCTAACCATTGCCGCCC
CCACTGTTGAAATAATAATTCAGAgcaaaataatttacaaaagaaaaaaa
catttttttgaatagGCCgataaaaaatgaactttttattcTTAATTTAG
TCCTATGAATTTCATTATTAGTGTTAATGCACTTTGAAGCTTCGCAATTC
cagtttctatttttttttccgtagaACTCTTAAACTGGGAATTACAACCT
CTAGAAGGAGCTTGTTTTAGTCCAAAAACTCtgttttttactttcttttc
caCTTCAACGAGCCACCTTCTATAGGCTTTTCCTTGTGGAAACGATGTCA
ATACAATTAGACGGATTCCTTTGAGAGTGATTTtcatacagtgtgtccca
aaaagcCAACAAATCTTTCATATAAagtgaaatttaataaaaaactgatt
ttctaAGCCAGACTAGATGATTACAATTTTATCTTCTCAATCAATAGATA
TCTAATTCCCAAGAAAATCAGGTTTAGTCataaaattttgtataaataat
tAAGACTTTACGAAATTTGTCCGCATTTTTTAAGACATACTGTATTATAC
TGTATTATTATTTATATGTTATTTTTCGTATATTTGACCATTGAACATTG
GATAAGAATCACTCATTTCCTGAGCCatatttaggggggggggcgaaCCC
CAAGGCCCTTGAAATCTTTTAAGTGACGCAACCAAACCCGGTCTATTTCA
AAGAATGTATTATTTAAAGAATGTTTTGTAAGGAGTTTTTTTGCTAAGGC
GTGGGAAATTTTTTAGCactcaaataaaaatgttgacGTCGGCCTTAAGG
GTTTGCCCCTATTAATCAGCTTAAAAAGTTCTACCAGTCACTGTGGCTGT
GATATCAAATATTCTCCAATTCCCTTTTTAGGTGATCGAATGACAGTGAC
GAAAATTACGAATAGTAACTCGGAGATAAGAGGTAAATCCAACATACAAA
CAcactacacccccttctcacagacccggttggattttttcagccagtgc
cCATATAACGTTCGATGAAcattgaaacgacgttgtgtgccagctgagtG
GGGATAAAGACAACGGGCTGAAACATGATGGGGATGATTATTCCCATATT
TCTTATGGctagggatttcaattcttttgtcagaaaattcagtgggtaTG
GGAAAAATGgcataatattttaaaattgggGGTTAATTTTCCAGGGGGCG
AtgtattggaaaaatttttccagtgggaaggtaTACCAGTGgttttgtga
gaagggggtgtataaatTGTTCTATagatttaaaaatgttattgaagaag
tttttgttcttattcattttcaatcttcattttctgattttttttggatt
ttttttctcttgaaaataTTCCACTtctttatcttttcaacaagcacaaa
agcGCTACTCAATTGTATGTGCTAAAAAGTATGAATTTTAGGAGAAACCC
AAGCTAACCGTTAATCATTTCTGAGGACACTCAAATCTacgaaattcttg
aaatttaatcccctgggaacggttgttcaaaagtcgaTTAGATTAGAAAT
TTGAATACTCAAtcatgaaaatggccaaaaaattaagaatacagTAAGAA
AACCCATAAGATGGTTTGGATGGTTTtcaacaaaaaagttaagaacattc
atgATGAGATGAAATGAAGCAAcattataaaaagaaaggtgTATAGTGAA
TTTCTCATCCCACGTTTTTTGTTCAAAGGAATTAGCAAATTCCCACCATG
CTTTGAGAATGACGTTATATATTTCTTTTTGTCGTAGATTTGAGCGATAT
TGATTTGGTTGATGGTCTTGATTTGACGAATGGATTGTTCAGAGCAAAAG
CATCATTCTTGAATAATTTACANtgctccatcccaccaacacaagaaaaa
agtgcgtgtctcatggtttcttttttgtttcatgggacaaaaagtgaggg
aaatacccaaaagacacgctgattttgttcttgggacaaaagtgagagaa
gcgcaaatgttattaaaag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_017347XLOC_017347Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00030295-exon-sc0000806-1491911889:111583..111967TCONS_00030295-exon-sc0000806-1491911889:111583..111967Clytia hemisphaericaexon
TCONS_00030295-exon-sc0000806-1510915933:111583..111967TCONS_00030295-exon-sc0000806-1510915933:111583..111967Clytia hemisphaericaexon
TCONS_00030295-exon-sc0000806-1575043694:111583..111967TCONS_00030295-exon-sc0000806-1575043694:111583..111967Clytia hemisphaericaexon
TCONS_00030295-exon-sc0000806-1491911889:119287..119413TCONS_00030295-exon-sc0000806-1491911889:119287..119413Clytia hemisphaericaexon
TCONS_00030295-exon-sc0000806-1510915933:119287..119413TCONS_00030295-exon-sc0000806-1510915933:119287..119413Clytia hemisphaericaexon
TCONS_00030295-exon-sc0000806-1575043694:119287..119413TCONS_00030295-exon-sc0000806-1575043694:119287..119413Clytia hemisphaericaexon
TCONS_00030295-exon-sc0000806-1491911889:120331..120360TCONS_00030295-exon-sc0000806-1491911889:120331..120360Clytia hemisphaericaexon
TCONS_00030295-exon-sc0000806-1510915933:120331..120360TCONS_00030295-exon-sc0000806-1510915933:120331..120360Clytia hemisphaericaexon
TCONS_00030295-exon-sc0000806-1575043694:120331..120360TCONS_00030295-exon-sc0000806-1575043694:120331..120360Clytia hemisphaericaexon
TCONS_00030295-exon-sc0000806-1491911889:121756..121881TCONS_00030295-exon-sc0000806-1491911889:121756..121881Clytia hemisphaericaexon
TCONS_00030295-exon-sc0000806-1510915933:121756..121881TCONS_00030295-exon-sc0000806-1510915933:121756..121881Clytia hemisphaericaexon
TCONS_00030295-exon-sc0000806-1575043694:121756..121881TCONS_00030295-exon-sc0000806-1575043694:121756..121881Clytia hemisphaericaexon
TCONS_00030295-exon-sc0000806-1491911889:122864..122914TCONS_00030295-exon-sc0000806-1491911889:122864..122914Clytia hemisphaericaexon
TCONS_00030295-exon-sc0000806-1510915933:122864..122914TCONS_00030295-exon-sc0000806-1510915933:122864..122914Clytia hemisphaericaexon
TCONS_00030295-exon-sc0000806-1575043694:122864..122914TCONS_00030295-exon-sc0000806-1575043694:122864..122914Clytia hemisphaericaexon
TCONS_00030295-exon-sc0000806-1491911889:123770..124001TCONS_00030295-exon-sc0000806-1491911889:123770..124001Clytia hemisphaericaexon
TCONS_00030295-exon-sc0000806-1510915933:123770..124001TCONS_00030295-exon-sc0000806-1510915933:123770..124001Clytia hemisphaericaexon
TCONS_00030295-exon-sc0000806-1575043694:123770..124001TCONS_00030295-exon-sc0000806-1575043694:123770..124001Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000806supercontigsc0000806:111583..124001 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0964353	0.0701254	0.1441	0.0548435	0.0322962	0.0510852	0.0308259	0.0288496	0	0	0	0	0.668037	0.0338925	0.147003	0	0.522306	0	0.192863	0.18028	0.122635	0	0.490761	0	0	0.670494	0.315239	1.32045	0.245469	2.32392
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00030295 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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