|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00030287 ID=TCONS_00030287|Name=TCONS_00030287|organism=Clytia hemisphaerica|type=transcript|length=1451bp
AAGAACTCGAAGACGAAATCCTCAAGCTTGACAGAGACCGTTCCACCGTT
ACCAACTCCCAACTCGCCATAGCAGTAGCCAATTTGAATTCTCGGTTACG
CTCACAAGGCTTATCATCTCGTGAAATGTGGACCCAACGTGACCAATTCA
CCTCCACTCCCCTACCGCTCGACGACCAGAAGCTCATAGAAGAACAACAC
CACCGCCGTTTAATCTACAACATGCGCCACAATCAGATCAGCTGCAAGCC
TTCCCGTAACGATCTACCTATCCCTGAAGGCTCAATTGTCTACATCAACA
CTGAACGGAACAAGACTCAATCTCGTCCACGCTACATCGTCTCATCCCAG
GACGGCCCTTGNAGCTGCAAGCCTTCCCGTAACGATCTACCTATCCCTGA
AGGCTCAATTGTCTACATCAACACTGAACGGAACAAGACTCAATCTCGTC
CACGCTACATCGTCTCATCCCAGGACGGCCCTTGGTATCGGGTAAAGAAG
TTCATCGGTACCCAACTCAGGAATCATTCCTACAGAGTCCACCGTAATCA
ACTGTCATACATACCCATCCCAGACCCTCCTTCCTCCGGTCAACCCACCA
CACACAATGACGAGGAAGAAACCACCCACGAAACTGAATCACCGCCTGAC
ACCAACACTGCCATCAGTGCCCCACTGCAACCTCGCCCAACAGTGGAACC
CCCATCAGTGCCGATACCTCCTGCGGCTTTGACAGAACCTCCAACCTCTG
TCAATGTTACCCCCAACGTTCAATCGCAAACACCTGACGTTGATATATCA
CGCCCAAAGCGACAGACTCGTCTCCCTGTCCGCTTTAGCGATTACGATAT
GAGCTGAACTGTAACAGCCAGAAAGTTAATGTTTTCGTCGTTTGCAGAAC
ACTATTCAGATTTATTGTTCNTTGACGTTGATATTTCACGCCCAAAGCGA
CAGACTCGTCTCCCTGTCCGCTTTAGCGATTACGATATGAGCTGAACTGT
AACAGCCAGAAAGTTAATGTTTTCGTCGTTTGCAGAACACTATTCAGATT
TATTGTTCCTGTCATTTATAGATCGCCCACGTCACGCATCGTgggatttg
attttgttgttactAAAGCTGTGACAGCTTGGTGTATTATATTCTGTTGA
ATATCATGTGATAACGTGTGTTTCTTATTCTACTattgtttggttgtttt
tggtttatCGTTCACTACGCGTTCAGTATCCTTGAGACTCGAACTCAAGA
AGAGAGAGACATAGAGATGAGGCATCACGCCAATATTATCGTTTATAGTT
TGCTCGCGGCTTATCCGCCATTATTGTTGTTATTACTTTTACGCTTAGTC
AGCATTTATTATACCAAAGCATTATTGTATAATGGTAGACCTAGTTGCGA
AACATATAATATATCTCGTGTTAGTAAACAAACACGTACGTCTCCACTAC
C Run BLAST on NCBI protein sequence of TCONS_00030287-protein >TCONS_00030287-protein ID=TCONS_00030287-protein|Name=TCONS_00030287-protein|organism=Clytia hemisphaerica|type=polypeptide|length=284bp
ELEDEILKLDRDRSTVTNSQLAIAVANLNSRLRSQGLSSREMWTQRDQFT
STPLPLDDQKLIEEQHHRRLIYNMRHNQISCKPSRNDLPIPEGSIVYINT
ERNKTQSRPRYIVSSQDGPXSCKPSRNDLPIPEGSIVYINTERNKTQSRP
RYIVSSQDGPWYRVKKFIGTQLRNHSYRVHRNQLSYIPIPDPPSSGQPTT
HNDEEETTHETESPPDTNTAISAPLQPRPTVEPPSVPIPPAALTEPPTSV
NVTPNVQSQTPDVDISRPKRQTRLPVRFSDYDMS Run BLAST on NCBI transcript from alignment at sc0000805:24680..26130 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00030287 ID=TCONS_00030287|Name=TCONS_00030287|organism=Clytia hemisphaerica|type=transcript|length=1451bp|location=Sequence derived from alignment at sc0000805:24680..26130 (Clytia hemisphaerica)
GGTAGTGGAGACGTACGTGTTTGTTTACTAACACGAGATATATTATATGT
TTCGCAACTAGGTCTACCATTATACAATAATGCTTTGGTATAATAAATGC
TGACTAAGCGTAAAAGTAATAACAACAATAATGGCGGATAAGCCGCGAGC
AAACTATAAACGATAATATTGGCGTGATGCCTCATCTCTATGTCTCTCTC
TTCTTGAGTTCGAGTCTCAAGGATACTGAACGCGTAGTGAACGataaacc
aaaaacaaccaaacaatAGTAGAATAAGAAACACACGTTATCACATGATA
TTCAACAGAATATAATACACCAAGCTGTCACAGCTTTagtaacaacaaaa
tcaaatcccACGATGCGTGACGTGGGCGATCTATAAATGACAGGAACAAT
AAATCTGAATAGTGTTCTGCAAACGACGAAAACATTAACTTTCTGGCTGT
TACAGTTCAGCTCATATCGTAATCGCTAAAGCGGACAGGGAGACGAGTCT
GTCGCTTTGGGCGTGAAATATCAACGTCAANGAACAATAAATCTGAATAG
TGTTCTGCAAACGACGAAAACATTAACTTTCTGGCTGTTACAGTTCAGCT
CATATCGTAATCGCTAAAGCGGACAGGGAGACGAGTCTGTCGCTTTGGGC
GTGATATATCAACGTCAGGTGTTTGCGATTGAACGTTGGGGGTAACATTG
ACAGAGGTTGGAGGTTCTGTCAAAGCCGCAGGAGGTATCGGCACTGATGG
GGGTTCCACTGTTGGGCGAGGTTGCAGTGGGGCACTGATGGCAGTGTTGG
TGTCAGGCGGTGATTCAGTTTCGTGGGTGGTTTCTTCCTCGTCATTGTGT
GTGGTGGGTTGACCGGAGGAAGGAGGGTCTGGGATGGGTATGTATGACAG
TTGATTACGGTGGACTCTGTAGGAATGATTCCTGAGTTGGGTACCGATGA
ACTTCTTTACCCGATACCAAGGGCCGTCCTGGGATGAGACGATGTAGCGT
GGACGAGATTGAGTCTTGTTCCGTTCAGTGTTGATGTAGACAATTGAGCC
TTCAGGGATAGGTAGATCGTTACGGGAAGGCTTGCAGCTNCAAGGGCCGT
CCTGGGATGAGACGATGTAGCGTGGACGAGATTGAGTCTTGTTCCGTTCA
GTGTTGATGTAGACAATTGAGCCTTCAGGGATAGGTAGATCGTTACGGGA
AGGCTTGCAGCTGATCTGATTGTGGCGCATGTTGTAGATTAAACGGCGGT
GGTGTTGTTCTTCTATGAGCTTCTGGTCGTCGAGCGGTAGGGGAGTGGAG
GTGAATTGGTCACGTTGGGTCCACATTTCACGAGATGATAAGCCTTGTGA
GCGTAACCGAGAATTCAAATTGGCTACTGCTATGGCGAGTTGGGAGTTGG
TAACGGTGGAACGGTCTCTGTCAAGCTTGAGGATTTCGTCTTCGAGTTCT
T Coding sequence (CDS) from alignment at sc0000805:24680..26130 >TCONS_00030287 ID=TCONS_00030287|Name=TCONS_00030287|organism=Clytia hemisphaerica|type=CDS|length=855bp|location=Sequence derived from alignment at sc0000805:24680..26130 (Clytia hemisphaerica)
TCAGCTCATATCGTAATCGCTAAAGCGGACAGGGAGACGAGTCTGTCGCT
TTGGGCGTGATATATCAACGTCAGGTGTTTGCGATTGAACGTTGGGGGTA
ACATTGACAGAGGTTGGAGGTTCTGTCAAAGCCGCAGGAGGTATCGGCAC
TGATGGGGGTTCCACTGTTGGGCGAGGTTGCAGTGGGGCACTGATGGCAG
TGTTGGTGTCAGGCGGTGATTCAGTTTCGTGGGTGGTTTCTTCCTCGTCA
TTGTGTGTGGTGGGTTGACCGGAGGAAGGAGGGTCTGGGATGGGTATGTA
TGACAGTTGATTACGGTGGACTCTGTAGGAATGATTCCTGAGTTGGGTAC
CGATGAACTTCTTTACCCGATACCAAGGGCCGTCCTGGGATGAGACGATG
TAGCGTGGACGAGATTGAGTCTTGTTCCGTTCAGTGTTGATGTAGACAAT
TGAGCCTTCAGGGATAGGTAGATCGTTACGGGAAGGCTTGCAGCTNCAAG
GGCCGTCCTGGGATGAGACGATGTAGCGTGGACGAGATTGAGTCTTGTTC
CGTTCAGTGTTGATGTAGACAATTGAGCCTTCAGGGATAGGTAGATCGTT
ACGGGAAGGCTTGCAGCTGATCTGATTGTGGCGCATGTTGTAGATTAAAC
GGCGGTGGTGTTGTTCTTCTATGAGCTTCTGGTCGTCGAGCGGTAGGGGA
GTGGAGGTGAATTGGTCACGTTGGGTCCACATTTCACGAGATGATAAGCC
TTGTGAGCGTAACCGAGAATTCAAATTGGCTACTGCTATGGCGAGTTGGG
AGTTGGTAACGGTGGAACGGTCTCTGTCAAGCTTGAGGATTTCGTCTTCG
AGTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00030287-exon-sc0000805-1491911889:24680..26130 | TCONS_00030287-exon-sc0000805-1491911889:24680..26130 | Clytia hemisphaerica | exon |
| TCONS_00030287-exon-sc0000805-1510915933:24680..26130 | TCONS_00030287-exon-sc0000805-1510915933:24680..26130 | Clytia hemisphaerica | exon |
| TCONS_00030287-exon-sc0000805-1575043694:24680..26130 | TCONS_00030287-exon-sc0000805-1575043694:24680..26130 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000805 | supercontig | sc0000805:24680..26130 . |
Blast
The following BLAST results are available for this feature:
|
