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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00030286 ID=TCONS_00030286|Name=TCONS_00030286|organism=Clytia hemisphaerica|type=transcript|length=827bp
GAAGAAAATCTTCTCAAGGTATTTCTTCGCCCTCGATATTGACTCAGCTC
TCCGTGCCACCTGTGAGAATTGTCATACCTGCTTCTCGCTCAAGAAGATT
GACCACAGCTCTCTGGAAGCTCCATCCACGACATCTGACCCTCCCCCTGC
CATCGGATTATCCTTTGCCGGTGATGTTCTTCGACGTGAAAAACAGTTCA
TACTTGTCCTGCGAGAGTCCGTCACATCATACACTCTTGCATGTATCATA
GACAGTGAGGACCACATTAACTTACGTAATGGACTGATTCAGCTTTGTGT
TGGATTAATTCCTTTAGACGGTCCCTCTGCAACCATTCGTACTGACCCTG
CTCCTGGCTTTCAAAAACTTGTCCAGGACACAGTTTTGGCTCAACACAGA
ATCATTATTGAGCTAGGCCGTGCGAAAAACATCAACAAGAATCCAGTCGC
GGAGAAGTCAATTCAAGAACTCGAAGACGAAATCCTCAAGCTTGACAGAG
ACCGTTCCACCGTTACCAACTCCCAACTCGCCATAGCAGTAGCCAATTTG
AATTCACGGTTACGCTCACAAGGCTTATCATCTCGAGAAATGTGGACCCA
ACGTGATCAATTCACCTCCACTCCCCTACCGCTCGACGACCAGAAGCTCA
TAGAAGAACAACACCACCGCCGTTTAATCTACAACATGCGCCACAATCAG
ATCAGCTGCAAGCCTTCCCGTAACGATCTACCTATCCCTGAAGGCTCAAT
TGTCTACATCAACACTGAACGGAACAAGACTCAATCTCGTCCACGCTACA
TCGTCTCATCCCAGGACGGCCCTTGNN Run BLAST on NCBI protein sequence of TCONS_00030286-protein >TCONS_00030286-protein ID=TCONS_00030286-protein|Name=TCONS_00030286-protein|organism=Clytia hemisphaerica|type=polypeptide|length=275bp
KKIFSRYFFALDIDSALRATCENCHTCFSLKKIDHSSLEAPSTTSDPPPA
IGLSFAGDVLRREKQFILVLRESVTSYTLACIIDSEDHINLRNGLIQLCV
GLIPLDGPSATIRTDPAPGFQKLVQDTVLAQHRIIIELGRAKNINKNPVA
EKSIQELEDEILKLDRDRSTVTNSQLAIAVANLNSRLRSQGLSSREMWTQ
RDQFTSTPLPLDDQKLIEEQHHRRLIYNMRHNQISCKPSRNDLPIPEGSI
VYINTERNKTQSRPRYIVSSQDGPX Run BLAST on NCBI transcript from alignment at sc0000805:20801..21627 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00030286 ID=TCONS_00030286|Name=TCONS_00030286|organism=Clytia hemisphaerica|type=transcript|length=827bp|location=Sequence derived from alignment at sc0000805:20801..21627 (Clytia hemisphaerica)
NNCAAGGGCCGTCCTGGGATGAGACGATGTAGCGTGGACGAGATTGAGTC
TTGTTCCGTTCAGTGTTGATGTAGACAATTGAGCCTTCAGGGATAGGTAG
ATCGTTACGGGAAGGCTTGCAGCTGATCTGATTGTGGCGCATGTTGTAGA
TTAAACGGCGGTGGTGTTGTTCTTCTATGAGCTTCTGGTCGTCGAGCGGT
AGGGGAGTGGAGGTGAATTGATCACGTTGGGTCCACATTTCTCGAGATGA
TAAGCCTTGTGAGCGTAACCGTGAATTCAAATTGGCTACTGCTATGGCGA
GTTGGGAGTTGGTAACGGTGGAACGGTCTCTGTCAAGCTTGAGGATTTCG
TCTTCGAGTTCTTGAATTGACTTCTCCGCGACTGGATTCTTGTTGATGTT
TTTCGCACGGCCTAGCTCAATAATGATTCTGTGTTGAGCCAAAACTGTGT
CCTGGACAAGTTTTTGAAAGCCAGGAGCAGGGTCAGTACGAATGGTTGCA
GAGGGACCGTCTAAAGGAATTAATCCAACACAAAGCTGAATCAGTCCATT
ACGTAAGTTAATGTGGTCCTCACTGTCTATGATACATGCAAGAGTGTATG
ATGTGACGGACTCTCGCAGGACAAGTATGAACTGTTTTTCACGTCGAAGA
ACATCACCGGCAAAGGATAATCCGATGGCAGGGGGAGGGTCAGATGTCGT
GGATGGAGCTTCCAGAGAGCTGTGGTCAATCTTCTTGAGCGAGAAGCAGG
TATGACAATTCTCACAGGTGGCACGGAGAGCTGAGTCAATATCGAGGGCG
AAGAAATACCTTGAGAAGATTTTCTTC Coding sequence (CDS) from alignment at sc0000805:20801..21627 >TCONS_00030286 ID=TCONS_00030286|Name=TCONS_00030286|organism=Clytia hemisphaerica|type=CDS|length=825bp|location=Sequence derived from alignment at sc0000805:20801..21627 (Clytia hemisphaerica)
NCAAGGGCCGTCCTGGGATGAGACGATGTAGCGTGGACGAGATTGAGTCT
TGTTCCGTTCAGTGTTGATGTAGACAATTGAGCCTTCAGGGATAGGTAGA
TCGTTACGGGAAGGCTTGCAGCTGATCTGATTGTGGCGCATGTTGTAGAT
TAAACGGCGGTGGTGTTGTTCTTCTATGAGCTTCTGGTCGTCGAGCGGTA
GGGGAGTGGAGGTGAATTGATCACGTTGGGTCCACATTTCTCGAGATGAT
AAGCCTTGTGAGCGTAACCGTGAATTCAAATTGGCTACTGCTATGGCGAG
TTGGGAGTTGGTAACGGTGGAACGGTCTCTGTCAAGCTTGAGGATTTCGT
CTTCGAGTTCTTGAATTGACTTCTCCGCGACTGGATTCTTGTTGATGTTT
TTCGCACGGCCTAGCTCAATAATGATTCTGTGTTGAGCCAAAACTGTGTC
CTGGACAAGTTTTTGAAAGCCAGGAGCAGGGTCAGTACGAATGGTTGCAG
AGGGACCGTCTAAAGGAATTAATCCAACACAAAGCTGAATCAGTCCATTA
CGTAAGTTAATGTGGTCCTCACTGTCTATGATACATGCAAGAGTGTATGA
TGTGACGGACTCTCGCAGGACAAGTATGAACTGTTTTTCACGTCGAAGAA
CATCACCGGCAAAGGATAATCCGATGGCAGGGGGAGGGTCAGATGTCGTG
GATGGAGCTTCCAGAGAGCTGTGGTCAATCTTCTTGAGCGAGAAGCAGGT
ATGACAATTCTCACAGGTGGCACGGAGAGCTGAGTCAATATCGAGGGCGA
AGAAATACCTTGAGAAGATTTTCTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00030286-exon-sc0000805-1491911889:20801..21627 | TCONS_00030286-exon-sc0000805-1491911889:20801..21627 | Clytia hemisphaerica | exon |
| TCONS_00030286-exon-sc0000805-1510915933:20801..21627 | TCONS_00030286-exon-sc0000805-1510915933:20801..21627 | Clytia hemisphaerica | exon |
| TCONS_00030286-exon-sc0000805-1575043694:20801..21627 | TCONS_00030286-exon-sc0000805-1575043694:20801..21627 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000805 | supercontig | sc0000805:20801..21627 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0015074 | DNA integration |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0015074 |
DNA integration |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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