TCONS_00030280 (transcript) - C. hemisphaerica

Overview
NameTCONS_00030280
Unique NameTCONS_00030280
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1715

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00030280 ID=TCONS_00030280|Name=TCONS_00030280|organism=Clytia hemisphaerica|type=transcript|length=1715bp
CTCAGattgatttttaataaatttctcaaattaatATCACTAAAATCCTT
TGCAGTACCAACACCAGCTCAACAAAAACCTGTGCCAGTAATTCATAAAC
CAACTACTAAACCATCCAGCAATGCTTACTCAGCAAGAAAATCACGACCT
TTGTCTTTTGTCGAATCTGCAGCCGCAAGGGCTTCAACGTCATCAGGAGG
AGGCACTTACCAAATCACTAAGACAACACACCAAACTCGTATCGTCAGTA
GCAGCACGAGAACGATAAGCACGACGAGCAGTGAAGAACCTTACGACGAA
CGAGATaATGGGTTAAGAGGAGCAGCATTGAAAAAAGGTGTTGGCTTCAA
CAAATTGCAACAACGAAAACAAATGAAAGAGAATTCACTGGCAAGGcCAT
CTGCAAACGGGCATGAAAATTTAGACCCAGAAATTCTAAGGAAATTCAAC
GCTGATCCCAATGGAAATACTTACTTGACGGACAACGAGTTCTTCGAAGT
GTTCCGTATGACACGTGATAAGTTCTATTCACAACCCAAATGGAAACAAG
AAGAGTTGAAGAAACGAgtcactttgttttgaaaataatcgCTGTCTCAG
TTATCCAATTTATTATGGATTCGATATGAGAAAGAGTCTGGTGTTGAGTG
AGAGGATAGTATGCACCAATCACGTGATCTGATTATTTGGTACTCGACGA
GCGTGTAATTTTTGAAGTAAACTTGAAATATAAACACAACAACGATTAAT
TTTCGTAAGAAATTTCCCAAATATTATGCAAAGCCTTTGCTTCGACTCAC
TTTATACTGTATGGGACTTTTACTGGTTAGGTTGGTTAACGCATTTGAAA
TAATACAGTTACTCAAGTACTACTTTCTCTGAGTTTTCTAATATAACACT
CACTAAATTTGAACCTTTTTAAACTTCTTTCTTTAAAACTGATTGTTGAA
AAAGGGTTGACTATTCGAACTCAAAAGGCTTTGTCCACGTTTGTTATCTT
CCAGTACCagtaaaaatttcatcaaaaaaatatatttagaaTAAGTAAAA
ATGTTACTCTAGGTATTATATTTTAGTGTATATATTTCTTCCTTATGTAA
CTGATGTGTATTTAGCCGGAGATAATTTTTAACAAAGTTAGTTTTTAATG
GCTATCTTTAGTGTGATGTCCTTAGCTTGGATAACTATATTTATCCAAGT
GTATCTAGAGATATTTAAATCGCATAATTTTCGACTGAACTAGAAAGTAA
TATCGAATAAATGGCAATCTTATCTTGTCTAAACCAGTGTTGGTACCTTA
AAAAAGCAGCTTTTGTTTCCTTTCCTACGAAATTACATTTTTAGGCAATA
TTGCGGTCCGGATTTGTGTACTTCCGTGTAAAATTGATCAACCAAAAAAG
ACCCATTAATTACTCATTTGCGAAATAATCAAAATCGTTCTCCTGCTTGC
AGATGAAATCTGGATAAACGGATCTTTAATTTTATTCTGTATTTTTATTC
TTCTAATTTTACTCTATATATTGTGTTTTGTAATAATTCTGTGTAGgttt
tttgatatgaaattgtaagaaatattttaattctGTTTGTACTTTAAGAC
CTcaatttttcgtaatttttatTCTTCTATACTGTACTATTTTTTTGGTA
TCGATCGCAATCTTTTTATGTTCATACAAATTTGTACAATTTTATTCCAT
TATTTTTTCTCGCTG
Run BLAST on NCBI

transcript from alignment at sc0000805:96575..102994-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00030280 ID=TCONS_00030280|Name=TCONS_00030280|organism=Clytia hemisphaerica|type=transcript|length=6420bp|location=Sequence derived from alignment at sc0000805:96575..102994- (Clytia hemisphaerica)
CTCAGATTGATTTTTAATAAATTTCTCAAATTAATATCACTAAAATCCTT
TGCAGTACCAACACCAGCTCAACAAAAACCTGTGCCAGTAATTCATAAAC
CAACTACTAAACCATCCAGCAATGCTTACTCAGCAAGAAAATCACGACCT
TTGTCTTTTGTCGAATCTGCAGCCGCAAGGGCTTCAAGTAAGGATACTAA
TCAGTAACTTGGTAAAAATAAACCCTTGATCTACTAATCTAAATTAAGCC
ACACAATTTTAGACCAGCCTTATTATTTAACAATCAGCTTTCTAGCTCAG
TCCATACAATATGTGGGTTTTGCTCCAAATATATACTGTATCTATTTAAA
CTTGATTCATGATATGCACCATTGCAATGTCTTCCACGGACCCAACAGCT
GATTGGTTGAAAGTGACGTATTGATTGACTTTACGTCACTTTTAACCAAT
CAGCTTTTGGGTCCGTGATGTAATGTCAGAAGACATTGCAATGGTGCATA
TCATTGATTGATTGATTGATTGATTGATTGATTGATTGATTGATTGATTG
ATTGATTGATTGATTGATTGATTGATTGATTGATTGATTGATTGATTGAT
TGATTTTATCTTAGCGTCATCAGGAGGAGGCACTTACCAAATCACTAAGA
CAACACACCAAACTCGTATCGTCAGTAGCAGCACGGTATGTGGAAGTTAC
ATTAACTTTTAAACATATTTTCTTCGACCTTTTCCGTTGTATGCAGTTGA
GCCTCCTTAATTCGAAATGTCTCCTTGATTCGAACAAGTTTTATGGTGCC
TTCTGTTTACAATGTCTTACAAATCTTACTCCATAACTCGAAATTTCCTT
AACTCGAACAGATTTGTGTTACCCGTGTGTGTTTGAGTTATGGAGACTCC
AGTTTATATGAGATTTTACAAAACAGAGGCTGATATGGATTTTAATCTTG
GATTGTTAAGTTTCATTCACTATTCCCATAACTTTAAAGCTCAAGCCCGT
AACAAGCCCTGTCCTTCACTAAGTATTAAAATTTTCCCATTTCAACCATT
GCAATTATCTGACGCATTCGAATTTACAAATTTAATTGCTAGCTTTGGCC
TTGTCTAGTCAACATCATTATTGCAAAAAGAATAAAATTTCGACCCAGGT
GTTTTGTTTCGAAAGTGTAAATTGTTTTTTCTCATAGAGAACGATAAGCA
CGACGAGCAGTGAAGAACCTTACGACGAACGAGATGTAAGAAATCAGTTG
CCATTGTTCATAATACTTGATTTTTACCTCACTGTAGAATGGCCTCGTAT
CGTTATGTGATCGTTACAATCCACATTCTACTTTATTTCTTTTCCCTCTG
CAATTAATACTGAATTCATGTAAGAGTGATGTAAGCTCAGTTGGTTAAGC
GTGTCTTGCAATACAAAGGTGTTTAAGGTACTGATTCGACCCTCTGCGGC
TCTTGTCGAAATCTCATTACCGTTCTCCATTATGATGAATAAAAATCAAG
GAGTTTGGCGATGGCCATCAGTTACCGTCTAAAAATTGGACATACTGCTG
AATGCAGACCCACATCGACGCTTCTGTGTCACAGACCAGCTTTGACCCCA
GCCCCACTGGAAAATTTGGCAAACATTTCGTCCACGTTGGAAAAATAACA
TTTCAGTCCCACGGGGAAATTGATTTCGATTACACCCCTATTAGAAATTC
AATGCTTGAAAATTGCACTCCGAAACCATCCCCACTGGATTTTTTAACCT
TGTGTCAAGGTTCGGCGATGAGATGAACAGAGGTCACCAGCTACCGTCTA
AAAATCGGAAATACTACTGAATGCAGACCCACAAACATGACCTGGGTAAA
ATAAATTAACAATAATGAAAAACATTCATTTCTTCTTTTTCTAGAATGGG
TTAAGAGGAGCAGCATTGAAAAAAGGTGTTGGCTTCAACAAATGTATATA
TTTTCTCCCCTTTTAAGTATTTTCAATGTCTTGCTGTAATCAACACAAAA
GAAAAATATTTGGTGTCTTTTTCGACTGAATTCTTGAGAGTACGATGAAA
ATAGGAGTCAGTTTTTGTCTTTATAGGGCTGTGTTACGTTGTCTTTTTTT
CTCAATTCTTGAGAGAACGATTAAAATCGGAGTCAATTTAGTGCTTTGTC
TCTAGAGGGTTGTGTTCCCTAGTAAGAACGACTATTCTATTACCATTATG
TCATTTTCCTTCATTTTACTTTAGTGCAACAACGAAAACAAATGAAAGAG
AATTCACTGGCAAGGGTTAGTCTTCACTTTTATTTCTTTCCTATTCATAT
GCATCATTGCAATGCCTTCCATTCCACCCAATAGCTGATTGGTTCAAAGT
GACGTATTGACTGATTTTACGTCACTTACAACCAATCAGCTGTTGGGTCC
GTGATGTAATGTCAGAAGACATTGCAGTGGTGCATATCATGAATTCATAT
GCATCATTGCAATATCTTCTGACAACATCGCGGACCCATCAGCTGATTGG
TTGCAAGTGACATAAGAAAGACCCGTCAATAATCACTTGTAACCAATCAG
CTGTTGGGGTCTTGATGTAATGTCAGGAAGACATTGTAGTGGTGCATATC
ATGAATAAACTAAAATTATTTATCTATACCCCATTTTTCAGAAGCCTAAC
GTTTTATGGGGAGAAATTGAAACTGGATACTTGAACCAATTAAAATGTTC
ATCCCGGGTTCACGCTTTATTAATTGGTTTTGTTTTATGTTTTAGCCATC
TGCAAACGGGCATGAAAATTTAGGTATGTCTTAAATTCCTTTGCTTTCGA
CTTTTTCACCTCTTTTAGTAGGGGGCTAATCCTTATGATCCGTAGCATCT
TTCGTGGGACTCAACCGCATGTGATTGGTTTGAAATAAGATAGGATTTTG
AAATTTTTGGAGAGGGGGCCCATGGATAAGGCCTGGGAACAGTTTTTATG
GCCAAAAAGCTGACGTTGTAAGCAAAATTTTACCCCAAAAATTGGCGAAA
AATTGAATTAAAACAAAAAGATCGATACCATCAAATAGAGCATGAAATTC
TGAGCAAAGAAGTATACTACAGCAAGTCTTATACTAAAACACACAAAAAG
ATATGATAAAAACTTTGAAATCCTGTGAAATCTGTTGCGTTTTAGACAAC
ATTTGACGTCAATCGTACTCTAACTGACAGAATTTTGAACTTCAAAAGCC
TGTATTTCTCGATATATTTGAGTACTACAAGGCTTGTTTTAGTATACCTT
TTTGCTCTGAAAAGTGGGAATGAAACCATTGCTACAACTGATAAATGAAT
AGCAAGCAATATTATACTGTTCATGATGTTATTTTCACTTCTTTTTAGAC
CCAGAAATTCTAAGGAAATTCAACGCTGATCCCAATGGAAATGTAAGTCT
TCAGTGTTTTTTTGGAACTATTCTATTATTTTTACTTTTGTTTTTTAGAA
GCAATACTTTTTCCATTGAAATTTAAAGATGGTTCAGCATGATTTAGTTC
GCTTTTAAACAACCCGTTGGCGTTGGCGTATTCATTTTCCAAATACTCTT
CCGAGACCAGTATTATGTTTACAACAACCACCCCTTTTTCCAGCTTGCAT
GACTTTTCAATCACGTGTTTGCCTTGTGGAAACTAACTTCGTTTCCTTAG
AGGCTTGAAGAATATCTTTCAATGAGGATTTCTTCAAATTCAAAACACCC
CACTTTTTGGTATGGAAAGTCGAATTCAAAATGAATTCTTCTGCTTCCTA
CCATTTAACCTTTTGAAGCCTTAAAAGTAAAAAGTATTAAATTTTGCAAA
TGCGATAAATTTGCTCGGTGCTTTAACTGTCTCAATAACTCTTAAAGCAA
TAACTTTCATACGATTAAAACGTTATTAAACTTTTTTTTAAAATGTATGA
ATATTAAATAGATGTCAAGATGAGATGACATTTTAAACCTTGTAGACTAT
GTAAGGACTGAAAGACTAAATACCACTAAACCAATTAAAATTATTTAAAG
AATTTTGAAATAGTTGCAGTCGCACTTGGTAATCTGCACGTAATTGCACT
CTAGCATGTACATCAACTTGCTATCCATTCATTCATTCTTCCATTCTCGT
ATCCATTCATCATGCAGTCACTCATTCTCAACACATAAACTCTAATAAAA
ATAGCTTCAAATTTGAAATATATTGTGTTTAGACCTACCCATACGAGATG
TTAAAGACTAGTAGCTTTAAGACACCATATAATGTCGACAAACATAAACT
TGAGGTATGTTTGTTGGTGTCTTTTTGGGGGTCTGTTTGATCATTTTAAA
TGAAGAAACCCGTTGAATACTTAGCAGTCTGTGCCACTAACTCGATCGGG
AAGATTCTTCCGAAATAGGTAGAACCTACTCGAACGGAAAATTGACTTGA
CACCCAAACGGGTAAGAGTTAAAAAACGGACTTCCAGATCGGGAAGAAGC
GGGTTCAGTCAATTTTCAACTTTCCAAAGAGGAGGAATCTTCCCAAATGA
GCAGAAAAAAATAGAGTAAGTTCTTCCCGTTCGGGAAGGCTCTTCCCATT
TCGCAAGAATCTTCCCGATCGAGTTAGTGGCACAGACTGCTTAGGTTAAC
AATGTCTGTTCTTGTAATTTGCACTAACAAACATTAATTAAATAACACTA
ACACTTTTTAAAATTAACACACTCTTCAACTGCTAATAATGATATAATGG
TCTGTATTAACTTTATGTACTGCACCCAAGAGGGATCTAATTTGTTTATT
TGGGGTATTTCAATTTTGAAATGTTTAATCATCGATTTCTTAAACCTTTT
TGATTTGTTAAGTTTGTAAAGATTTTTGAAAATATTTGCCAATTTTCCAC
AGCTCTGTGATTCTTATCTTGCTCTGAAAAGTGATCCTTACTTAAATCGA
CCATCGTGTTTATATCAAGTTATTTGGCTCAAAAGGGAAAATTTTTGTTT
CGTGATTTGAGCCCGAATTAGCGAGAGATGACTACATTTTGGTTGCTCTA
AATTTAGGCTCTCATTGCTGCGTTTCCTGAAATCGTCTGAAATTATATTT
TGACAAATAGAGTATAAGGTTTTACAATTTTTTCTAAAACCGTCTAAAAA
TATATTTTGACAAGAAAATAAGATTTACAATTTTTAATTTCAATAATGAG
ATTCCATTCACTTCTTTGTACAGACTTACTTGACGGACAACGAGTTCTTC
GAAGTGTTCCGTATGACACGTGATAAGTTCTATTCACAACCCAAATGGAA
ACAAGAAGAGTTGAAGAAACGAGTCACTTTGTTTTGAAAATAATCGCTGT
CTCAGTTATCCAATTTATTATGGATTCGATATGAGAAAGAGTCTGGTGTT
GAGTGAGAGGATAGTATGCACCAATCACGTGATCTGATTATTTGGTACTC
GACGAGCGTGTAATTTTTGAAGTAAACTTGAAATATAAACACAACAACGA
TTAATTTTCGTAAGAAATTTCCCAAATATTATGCAAAGCCTTTGCTTCGA
CTCACTTTATACTGTATGGGACTTTTACTGGTTAGGTTGGTTAACGCATT
TGAAATAATACAGTTACTCAAGTACTACTTTCTCTGAGTTTTCTAATATA
ACACTCACTAAATTTGAACCTTTTTAAACTTCTTTCTTTAAAACTGATTG
TTGAAAAAGGGTTGACTATTCGAACTCAAAAGGCTTTGTCCACGTTTGTT
ATCTTCCAGTACCAGTAAAAATTTCATCAAAAAAATATATTTAGAATAAG
TAAAAATGTTACTCTAGGTATTATATTTTAGTGTATATATTTCTTCCTTA
TGTAACTGATGTGTATTTAGCCGGAGATAATTTTTAACAAAGTTAGTTTT
TAATGGCTATCTTTAGTGTGATGTCCTTAGCTTGGATAACTATATTTATC
CAAGTGTATCTAGAGATATTTAAATCGCATAATTTTCGACTGAACTAGAA
AGTAATATCGAATAAATGGCAATCTTATCTTGTCTAAACCAGTGTTGGTA
CCTTAAAAAAGCAGCTTTTGTTTCCTTTCCTACGAAATTACATTTTTAGG
CAATATTGCGGTCCGGATTTGTGTACTTCCGTGTAAAATTGATCAACCAA
AAAAGACCCATTAATTACTCATTTGCGAAATAATCAAAATCGTTCTCCTG
CTTGCAGATGAAATCTGGATAAACGGATCTTTAATTTTATTCTGTATTTT
TATTCTTCTAATTTTACTCTATATATTGTGTTTTGTAATAATTCTGTGTA
GGTTTTTTGATATGAAATTGTAAGAAATATTTTAATTCTGTTTGTACTTT
AAGACCTCAATTTTTCGTAATTTTTATTCTTCTATACTGTACTATTTTTT
TGGTATCGATCGCAATCTTTTTATGTTCATACAAATTTGTACAATTTTAT
TCCATTATTTTTTCTCGCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_017339XLOC_017339Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00030280-exon-sc0000805-1575043694:102808..102994TCONS_00030280-exon-sc0000805-1575043694:102808..102994Clytia hemisphaericaexon
TCONS_00030280-exon-sc0000805-1575043694:102310..102380TCONS_00030280-exon-sc0000805-1575043694:102310..102380Clytia hemisphaericaexon
TCONS_00030280-exon-sc0000805-1575043694:101760..101807TCONS_00030280-exon-sc0000805-1575043694:101760..101807Clytia hemisphaericaexon
TCONS_00030280-exon-sc0000805-1575043694:101052..101100TCONS_00030280-exon-sc0000805-1575043694:101052..101100Clytia hemisphaericaexon
TCONS_00030280-exon-sc0000805-1575043694:100730..100770TCONS_00030280-exon-sc0000805-1575043694:100730..100770Clytia hemisphaericaexon
TCONS_00030280-exon-sc0000805-1575043694:100222..100249TCONS_00030280-exon-sc0000805-1575043694:100222..100249Clytia hemisphaericaexon
TCONS_00030280-exon-sc0000805-1575043694:99603..99646TCONS_00030280-exon-sc0000805-1575043694:99603..99646Clytia hemisphaericaexon
TCONS_00030280-exon-sc0000805-1575043694:96575..97821TCONS_00030280-exon-sc0000805-1575043694:96575..97821Clytia hemisphaericaexon
TCONS_00030280-exon-sc0000805-1510915933:102808..102994TCONS_00030280-exon-sc0000805-1510915933:102808..102994Clytia hemisphaericaexon
TCONS_00030280-exon-sc0000805-1510915933:102310..102380TCONS_00030280-exon-sc0000805-1510915933:102310..102380Clytia hemisphaericaexon
TCONS_00030280-exon-sc0000805-1510915933:101760..101807TCONS_00030280-exon-sc0000805-1510915933:101760..101807Clytia hemisphaericaexon
TCONS_00030280-exon-sc0000805-1510915933:101052..101100TCONS_00030280-exon-sc0000805-1510915933:101052..101100Clytia hemisphaericaexon
TCONS_00030280-exon-sc0000805-1510915933:100730..100770TCONS_00030280-exon-sc0000805-1510915933:100730..100770Clytia hemisphaericaexon
TCONS_00030280-exon-sc0000805-1510915933:100222..100249TCONS_00030280-exon-sc0000805-1510915933:100222..100249Clytia hemisphaericaexon
TCONS_00030280-exon-sc0000805-1510915933:99603..99646TCONS_00030280-exon-sc0000805-1510915933:99603..99646Clytia hemisphaericaexon
TCONS_00030280-exon-sc0000805-1510915933:96575..97821TCONS_00030280-exon-sc0000805-1510915933:96575..97821Clytia hemisphaericaexon
TCONS_00030280-exon-sc0000805-1491911889:102808..102994TCONS_00030280-exon-sc0000805-1491911889:102808..102994Clytia hemisphaericaexon
TCONS_00030280-exon-sc0000805-1491911889:102310..102380TCONS_00030280-exon-sc0000805-1491911889:102310..102380Clytia hemisphaericaexon
TCONS_00030280-exon-sc0000805-1491911889:101760..101807TCONS_00030280-exon-sc0000805-1491911889:101760..101807Clytia hemisphaericaexon
TCONS_00030280-exon-sc0000805-1491911889:101052..101100TCONS_00030280-exon-sc0000805-1491911889:101052..101100Clytia hemisphaericaexon
TCONS_00030280-exon-sc0000805-1491911889:100730..100770TCONS_00030280-exon-sc0000805-1491911889:100730..100770Clytia hemisphaericaexon
TCONS_00030280-exon-sc0000805-1491911889:100222..100249TCONS_00030280-exon-sc0000805-1491911889:100222..100249Clytia hemisphaericaexon
TCONS_00030280-exon-sc0000805-1491911889:99603..99646TCONS_00030280-exon-sc0000805-1491911889:99603..99646Clytia hemisphaericaexon
TCONS_00030280-exon-sc0000805-1491911889:96575..97821TCONS_00030280-exon-sc0000805-1491911889:96575..97821Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000805supercontigsc0000805:96575..102994 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.33858e-10	3.26627e-07	0.700847	0.406157	6.68506	6.75879e-05	2.57234	2.31934	4.22529	3.02827	3.0575	2.93498	2.87318	3.37517	1.22111	0.5127	1.68395	1.43044	8.87971	6.18741	0	2.11206	0	0	1.74989	3.34305	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00030280 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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