TCONS_00030279 (transcript) - C. hemisphaerica

Overview
NameTCONS_00030279
Unique NameTCONS_00030279
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1740

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00030279 ID=TCONS_00030279|Name=TCONS_00030279|organism=Clytia hemisphaerica|type=transcript|length=1740bp
CTTTGCAGTACCAACACCAGCTCAACAAAAACCTGTGCCAGTAATTCATA
AACCAACTACTAAACCATCCAGCAATGCTTACTCAGCAAGAAAATCACGA
CCTTTGTCTTTTGTCGAATCTGCAGCCGCAAGGGCTTCAACGTCATCAGG
AGGAGGCACTTACCAAATCACTAAGACAACACACCAAACTCGTATCGTCA
GTAGCAGCACGAGAACGATAAGCACGACGAGCAGTGAAGAACCTTACGAC
GAACGAGATaATGGGTTAAGAGGAGCAGCATTGAAAAAAGGTGTTGGCTT
CAACAAATTGCAACAACGAAAACAAATGAAAGAGAATTCACTGGCAAGGc
CATCTGCAAACGGGCATGAAAATTTAGACCCAGAAATTCTAAGGAAATTC
AACGCTGATCCCAATGGAAATACCTACCCATACGAGATGTTAAAGACTAG
TAGCTTTAAGACACCATATAATGTCGACAAACATAAACTTGAGACTTACT
TGACGGACAACGAGTTCTTCGAAGTGTTCCGTATGACACGTGATAAGTTC
TATTCACAACCCAAATGGAAACAAGAAGAGTTGAAGAAACGAgtcacttt
gttttgaaaataatcgCTGTCTCAGTTATCCAATTTATTATGGATTCGAT
ATGAGAAAGAGTCTGGTGTTGAGTGAGAGGATAGTATGCACCAATCACGT
GATCTGATTATTTGGTACTCGACGAGCGTGTAATTTTTGAAGTAAACTTG
AAATATAAACACAACAACGATTAATTTTCGTAAGAAATTTCCCAAATATT
ATGCAAAGCCTTTGCTTCGACTCACTTTATACTGTATGGGACTTTTACTG
GTTAGGTTGGTTAACGCATTTGAAATAATACAGTTACTCAAGTACTACTT
TCTCTGAGTTTTCTAATATAACACTCACTAAATTTGAACCTTTTTAAACT
TCTTTCTTTAAAACTGATTGTTGAAAAAGGGTTGACTATTCGAACTCAAA
AGGCTTTGTCCACGTTTGTTATCTTCCAGTACCagtaaaaatttcatcaa
aaaaatatatttagaaTAAGTAAAAATGTTACTCTAGGTATTATATTTTA
GTGTATATATTTCTTCCTTATGTAACTGATGTGTATTTAGCCGGAGATAA
TTTTTAACAAAGTTAGTTTTTAATGGCTATCTTTAGTGTGATGTCCTTAG
CTTGGATAACTATATTTATCCAAGTGTATCTAGAGATATTTAAATCGCAT
AATTTTCGACTGAACTAGAAAGTAATATCGAATAAATGGCAATCTTATCT
TGTCTAAACCAGTGTTGGTACCTTAAAAAAGCAGCTTTTGTTTCCTTTCC
TACGAAATTACATTTTTAGGCAATATTGCGGTCCGGATTTGTGTACTTCC
GTGTAAAATTGATCAACCAAAAAAGACCCATTAATTACTCATTTGCGAAA
TAATCAAAATCGTTCTCCTGCTTGCAGATGAAATCTGGATAAACGGATCT
TTAATTTTATTCTGTATTTTTATTCTTCTAATTTTACTCTATATATTGTG
TTTTGTAATAATTCTGTGTAGgttttttgatatgaaattgtaagaaatat
tttaattctGTTTGTACTTTAAGACCTcaatttttcgtaatttttatTCT
TCTATACTGTACTATTTTTTTGGTATCGATCGCAATCTTTTTATGTTCAT
ACAAATTTGTACAATTTTATTCCATTATTTTTTCTCGCTG
Run BLAST on NCBI

transcript from alignment at sc0000805:96575..102947-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00030279 ID=TCONS_00030279|Name=TCONS_00030279|organism=Clytia hemisphaerica|type=transcript|length=6373bp|location=Sequence derived from alignment at sc0000805:96575..102947- (Clytia hemisphaerica)
CTTTGCAGTACCAACACCAGCTCAACAAAAACCTGTGCCAGTAATTCATA
AACCAACTACTAAACCATCCAGCAATGCTTACTCAGCAAGAAAATCACGA
CCTTTGTCTTTTGTCGAATCTGCAGCCGCAAGGGCTTCAAGTAAGGATAC
TAATCAGTAACTTGGTAAAAATAAACCCTTGATCTACTAATCTAAATTAA
GCCACACAATTTTAGACCAGCCTTATTATTTAACAATCAGCTTTCTAGCT
CAGTCCATACAATATGTGGGTTTTGCTCCAAATATATACTGTATCTATTT
AAACTTGATTCATGATATGCACCATTGCAATGTCTTCCACGGACCCAACA
GCTGATTGGTTGAAAGTGACGTATTGATTGACTTTACGTCACTTTTAACC
AATCAGCTTTTGGGTCCGTGATGTAATGTCAGAAGACATTGCAATGGTGC
ATATCATTGATTGATTGATTGATTGATTGATTGATTGATTGATTGATTGA
TTGATTGATTGATTGATTGATTGATTGATTGATTGATTGATTGATTGATT
GATTGATTTTATCTTAGCGTCATCAGGAGGAGGCACTTACCAAATCACTA
AGACAACACACCAAACTCGTATCGTCAGTAGCAGCACGGTATGTGGAAGT
TACATTAACTTTTAAACATATTTTCTTCGACCTTTTCCGTTGTATGCAGT
TGAGCCTCCTTAATTCGAAATGTCTCCTTGATTCGAACAAGTTTTATGGT
GCCTTCTGTTTACAATGTCTTACAAATCTTACTCCATAACTCGAAATTTC
CTTAACTCGAACAGATTTGTGTTACCCGTGTGTGTTTGAGTTATGGAGAC
TCCAGTTTATATGAGATTTTACAAAACAGAGGCTGATATGGATTTTAATC
TTGGATTGTTAAGTTTCATTCACTATTCCCATAACTTTAAAGCTCAAGCC
CGTAACAAGCCCTGTCCTTCACTAAGTATTAAAATTTTCCCATTTCAACC
ATTGCAATTATCTGACGCATTCGAATTTACAAATTTAATTGCTAGCTTTG
GCCTTGTCTAGTCAACATCATTATTGCAAAAAGAATAAAATTTCGACCCA
GGTGTTTTGTTTCGAAAGTGTAAATTGTTTTTTCTCATAGAGAACGATAA
GCACGACGAGCAGTGAAGAACCTTACGACGAACGAGATGTAAGAAATCAG
TTGCCATTGTTCATAATACTTGATTTTTACCTCACTGTAGAATGGCCTCG
TATCGTTATGTGATCGTTACAATCCACATTCTACTTTATTTCTTTTCCCT
CTGCAATTAATACTGAATTCATGTAAGAGTGATGTAAGCTCAGTTGGTTA
AGCGTGTCTTGCAATACAAAGGTGTTTAAGGTACTGATTCGACCCTCTGC
GGCTCTTGTCGAAATCTCATTACCGTTCTCCATTATGATGAATAAAAATC
AAGGAGTTTGGCGATGGCCATCAGTTACCGTCTAAAAATTGGACATACTG
CTGAATGCAGACCCACATCGACGCTTCTGTGTCACAGACCAGCTTTGACC
CCAGCCCCACTGGAAAATTTGGCAAACATTTCGTCCACGTTGGAAAAATA
ACATTTCAGTCCCACGGGGAAATTGATTTCGATTACACCCCTATTAGAAA
TTCAATGCTTGAAAATTGCACTCCGAAACCATCCCCACTGGATTTTTTAA
CCTTGTGTCAAGGTTCGGCGATGAGATGAACAGAGGTCACCAGCTACCGT
CTAAAAATCGGAAATACTACTGAATGCAGACCCACAAACATGACCTGGGT
AAAATAAATTAACAATAATGAAAAACATTCATTTCTTCTTTTTCTAGAAT
GGGTTAAGAGGAGCAGCATTGAAAAAAGGTGTTGGCTTCAACAAATGTAT
ATATTTTCTCCCCTTTTAAGTATTTTCAATGTCTTGCTGTAATCAACACA
AAAGAAAAATATTTGGTGTCTTTTTCGACTGAATTCTTGAGAGTACGATG
AAAATAGGAGTCAGTTTTTGTCTTTATAGGGCTGTGTTACGTTGTCTTTT
TTTCTCAATTCTTGAGAGAACGATTAAAATCGGAGTCAATTTAGTGCTTT
GTCTCTAGAGGGTTGTGTTCCCTAGTAAGAACGACTATTCTATTACCATT
ATGTCATTTTCCTTCATTTTACTTTAGTGCAACAACGAAAACAAATGAAA
GAGAATTCACTGGCAAGGGTTAGTCTTCACTTTTATTTCTTTCCTATTCA
TATGCATCATTGCAATGCCTTCCATTCCACCCAATAGCTGATTGGTTCAA
AGTGACGTATTGACTGATTTTACGTCACTTACAACCAATCAGCTGTTGGG
TCCGTGATGTAATGTCAGAAGACATTGCAGTGGTGCATATCATGAATTCA
TATGCATCATTGCAATATCTTCTGACAACATCGCGGACCCATCAGCTGAT
TGGTTGCAAGTGACATAAGAAAGACCCGTCAATAATCACTTGTAACCAAT
CAGCTGTTGGGGTCTTGATGTAATGTCAGGAAGACATTGTAGTGGTGCAT
ATCATGAATAAACTAAAATTATTTATCTATACCCCATTTTTCAGAAGCCT
AACGTTTTATGGGGAGAAATTGAAACTGGATACTTGAACCAATTAAAATG
TTCATCCCGGGTTCACGCTTTATTAATTGGTTTTGTTTTATGTTTTAGCC
ATCTGCAAACGGGCATGAAAATTTAGGTATGTCTTAAATTCCTTTGCTTT
CGACTTTTTCACCTCTTTTAGTAGGGGGCTAATCCTTATGATCCGTAGCA
TCTTTCGTGGGACTCAACCGCATGTGATTGGTTTGAAATAAGATAGGATT
TTGAAATTTTTGGAGAGGGGGCCCATGGATAAGGCCTGGGAACAGTTTTT
ATGGCCAAAAAGCTGACGTTGTAAGCAAAATTTTACCCCAAAAATTGGCG
AAAAATTGAATTAAAACAAAAAGATCGATACCATCAAATAGAGCATGAAA
TTCTGAGCAAAGAAGTATACTACAGCAAGTCTTATACTAAAACACACAAA
AAGATATGATAAAAACTTTGAAATCCTGTGAAATCTGTTGCGTTTTAGAC
AACATTTGACGTCAATCGTACTCTAACTGACAGAATTTTGAACTTCAAAA
GCCTGTATTTCTCGATATATTTGAGTACTACAAGGCTTGTTTTAGTATAC
CTTTTTGCTCTGAAAAGTGGGAATGAAACCATTGCTACAACTGATAAATG
AATAGCAAGCAATATTATACTGTTCATGATGTTATTTTCACTTCTTTTTA
GACCCAGAAATTCTAAGGAAATTCAACGCTGATCCCAATGGAAATGTAAG
TCTTCAGTGTTTTTTTGGAACTATTCTATTATTTTTACTTTTGTTTTTTA
GAAGCAATACTTTTTCCATTGAAATTTAAAGATGGTTCAGCATGATTTAG
TTCGCTTTTAAACAACCCGTTGGCGTTGGCGTATTCATTTTCCAAATACT
CTTCCGAGACCAGTATTATGTTTACAACAACCACCCCTTTTTCCAGCTTG
CATGACTTTTCAATCACGTGTTTGCCTTGTGGAAACTAACTTCGTTTCCT
TAGAGGCTTGAAGAATATCTTTCAATGAGGATTTCTTCAAATTCAAAACA
CCCCACTTTTTGGTATGGAAAGTCGAATTCAAAATGAATTCTTCTGCTTC
CTACCATTTAACCTTTTGAAGCCTTAAAAGTAAAAAGTATTAAATTTTGC
AAATGCGATAAATTTGCTCGGTGCTTTAACTGTCTCAATAACTCTTAAAG
CAATAACTTTCATACGATTAAAACGTTATTAAACTTTTTTTTAAAATGTA
TGAATATTAAATAGATGTCAAGATGAGATGACATTTTAAACCTTGTAGAC
TATGTAAGGACTGAAAGACTAAATACCACTAAACCAATTAAAATTATTTA
AAGAATTTTGAAATAGTTGCAGTCGCACTTGGTAATCTGCACGTAATTGC
ACTCTAGCATGTACATCAACTTGCTATCCATTCATTCATTCTTCCATTCT
CGTATCCATTCATCATGCAGTCACTCATTCTCAACACATAAACTCTAATA
AAAATAGCTTCAAATTTGAAATATATTGTGTTTAGACCTACCCATACGAG
ATGTTAAAGACTAGTAGCTTTAAGACACCATATAATGTCGACAAACATAA
ACTTGAGGTATGTTTGTTGGTGTCTTTTTGGGGGTCTGTTTGATCATTTT
AAATGAAGAAACCCGTTGAATACTTAGCAGTCTGTGCCACTAACTCGATC
GGGAAGATTCTTCCGAAATAGGTAGAACCTACTCGAACGGAAAATTGACT
TGACACCCAAACGGGTAAGAGTTAAAAAACGGACTTCCAGATCGGGAAGA
AGCGGGTTCAGTCAATTTTCAACTTTCCAAAGAGGAGGAATCTTCCCAAA
TGAGCAGAAAAAAATAGAGTAAGTTCTTCCCGTTCGGGAAGGCTCTTCCC
ATTTCGCAAGAATCTTCCCGATCGAGTTAGTGGCACAGACTGCTTAGGTT
AACAATGTCTGTTCTTGTAATTTGCACTAACAAACATTAATTAAATAACA
CTAACACTTTTTAAAATTAACACACTCTTCAACTGCTAATAATGATATAA
TGGTCTGTATTAACTTTATGTACTGCACCCAAGAGGGATCTAATTTGTTT
ATTTGGGGTATTTCAATTTTGAAATGTTTAATCATCGATTTCTTAAACCT
TTTTGATTTGTTAAGTTTGTAAAGATTTTTGAAAATATTTGCCAATTTTC
CACAGCTCTGTGATTCTTATCTTGCTCTGAAAAGTGATCCTTACTTAAAT
CGACCATCGTGTTTATATCAAGTTATTTGGCTCAAAAGGGAAAATTTTTG
TTTCGTGATTTGAGCCCGAATTAGCGAGAGATGACTACATTTTGGTTGCT
CTAAATTTAGGCTCTCATTGCTGCGTTTCCTGAAATCGTCTGAAATTATA
TTTTGACAAATAGAGTATAAGGTTTTACAATTTTTTCTAAAACCGTCTAA
AAATATATTTTGACAAGAAAATAAGATTTACAATTTTTAATTTCAATAAT
GAGATTCCATTCACTTCTTTGTACAGACTTACTTGACGGACAACGAGTTC
TTCGAAGTGTTCCGTATGACACGTGATAAGTTCTATTCACAACCCAAATG
GAAACAAGAAGAGTTGAAGAAACGAGTCACTTTGTTTTGAAAATAATCGC
TGTCTCAGTTATCCAATTTATTATGGATTCGATATGAGAAAGAGTCTGGT
GTTGAGTGAGAGGATAGTATGCACCAATCACGTGATCTGATTATTTGGTA
CTCGACGAGCGTGTAATTTTTGAAGTAAACTTGAAATATAAACACAACAA
CGATTAATTTTCGTAAGAAATTTCCCAAATATTATGCAAAGCCTTTGCTT
CGACTCACTTTATACTGTATGGGACTTTTACTGGTTAGGTTGGTTAACGC
ATTTGAAATAATACAGTTACTCAAGTACTACTTTCTCTGAGTTTTCTAAT
ATAACACTCACTAAATTTGAACCTTTTTAAACTTCTTTCTTTAAAACTGA
TTGTTGAAAAAGGGTTGACTATTCGAACTCAAAAGGCTTTGTCCACGTTT
GTTATCTTCCAGTACCAGTAAAAATTTCATCAAAAAAATATATTTAGAAT
AAGTAAAAATGTTACTCTAGGTATTATATTTTAGTGTATATATTTCTTCC
TTATGTAACTGATGTGTATTTAGCCGGAGATAATTTTTAACAAAGTTAGT
TTTTAATGGCTATCTTTAGTGTGATGTCCTTAGCTTGGATAACTATATTT
ATCCAAGTGTATCTAGAGATATTTAAATCGCATAATTTTCGACTGAACTA
GAAAGTAATATCGAATAAATGGCAATCTTATCTTGTCTAAACCAGTGTTG
GTACCTTAAAAAAGCAGCTTTTGTTTCCTTTCCTACGAAATTACATTTTT
AGGCAATATTGCGGTCCGGATTTGTGTACTTCCGTGTAAAATTGATCAAC
CAAAAAAGACCCATTAATTACTCATTTGCGAAATAATCAAAATCGTTCTC
CTGCTTGCAGATGAAATCTGGATAAACGGATCTTTAATTTTATTCTGTAT
TTTTATTCTTCTAATTTTACTCTATATATTGTGTTTTGTAATAATTCTGT
GTAGGTTTTTTGATATGAAATTGTAAGAAATATTTTAATTCTGTTTGTAC
TTTAAGACCTCAATTTTTCGTAATTTTTATTCTTCTATACTGTACTATTT
TTTTGGTATCGATCGCAATCTTTTTATGTTCATACAAATTTGTACAATTT
TATTCCATTATTTTTTCTCGCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_017339XLOC_017339Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00030279-exon-sc0000805-1575043694:102808..102947TCONS_00030279-exon-sc0000805-1575043694:102808..102947Clytia hemisphaericaexon
TCONS_00030279-exon-sc0000805-1575043694:102310..102380TCONS_00030279-exon-sc0000805-1575043694:102310..102380Clytia hemisphaericaexon
TCONS_00030279-exon-sc0000805-1575043694:101760..101807TCONS_00030279-exon-sc0000805-1575043694:101760..101807Clytia hemisphaericaexon
TCONS_00030279-exon-sc0000805-1575043694:101052..101100TCONS_00030279-exon-sc0000805-1575043694:101052..101100Clytia hemisphaericaexon
TCONS_00030279-exon-sc0000805-1575043694:100730..100770TCONS_00030279-exon-sc0000805-1575043694:100730..100770Clytia hemisphaericaexon
TCONS_00030279-exon-sc0000805-1575043694:100222..100249TCONS_00030279-exon-sc0000805-1575043694:100222..100249Clytia hemisphaericaexon
TCONS_00030279-exon-sc0000805-1575043694:99603..99646TCONS_00030279-exon-sc0000805-1575043694:99603..99646Clytia hemisphaericaexon
TCONS_00030279-exon-sc0000805-1575043694:98741..98812TCONS_00030279-exon-sc0000805-1575043694:98741..98812Clytia hemisphaericaexon
TCONS_00030279-exon-sc0000805-1575043694:96575..97821TCONS_00030279-exon-sc0000805-1575043694:96575..97821Clytia hemisphaericaexon
TCONS_00030279-exon-sc0000805-1510915933:102808..102947TCONS_00030279-exon-sc0000805-1510915933:102808..102947Clytia hemisphaericaexon
TCONS_00030279-exon-sc0000805-1510915933:102310..102380TCONS_00030279-exon-sc0000805-1510915933:102310..102380Clytia hemisphaericaexon
TCONS_00030279-exon-sc0000805-1510915933:101760..101807TCONS_00030279-exon-sc0000805-1510915933:101760..101807Clytia hemisphaericaexon
TCONS_00030279-exon-sc0000805-1510915933:101052..101100TCONS_00030279-exon-sc0000805-1510915933:101052..101100Clytia hemisphaericaexon
TCONS_00030279-exon-sc0000805-1510915933:100730..100770TCONS_00030279-exon-sc0000805-1510915933:100730..100770Clytia hemisphaericaexon
TCONS_00030279-exon-sc0000805-1510915933:100222..100249TCONS_00030279-exon-sc0000805-1510915933:100222..100249Clytia hemisphaericaexon
TCONS_00030279-exon-sc0000805-1510915933:99603..99646TCONS_00030279-exon-sc0000805-1510915933:99603..99646Clytia hemisphaericaexon
TCONS_00030279-exon-sc0000805-1510915933:98741..98812TCONS_00030279-exon-sc0000805-1510915933:98741..98812Clytia hemisphaericaexon
TCONS_00030279-exon-sc0000805-1510915933:96575..97821TCONS_00030279-exon-sc0000805-1510915933:96575..97821Clytia hemisphaericaexon
TCONS_00030279-exon-sc0000805-1491911889:102808..102947TCONS_00030279-exon-sc0000805-1491911889:102808..102947Clytia hemisphaericaexon
TCONS_00030279-exon-sc0000805-1491911889:102310..102380TCONS_00030279-exon-sc0000805-1491911889:102310..102380Clytia hemisphaericaexon
TCONS_00030279-exon-sc0000805-1491911889:101760..101807TCONS_00030279-exon-sc0000805-1491911889:101760..101807Clytia hemisphaericaexon
TCONS_00030279-exon-sc0000805-1491911889:101052..101100TCONS_00030279-exon-sc0000805-1491911889:101052..101100Clytia hemisphaericaexon
TCONS_00030279-exon-sc0000805-1491911889:100730..100770TCONS_00030279-exon-sc0000805-1491911889:100730..100770Clytia hemisphaericaexon
TCONS_00030279-exon-sc0000805-1491911889:100222..100249TCONS_00030279-exon-sc0000805-1491911889:100222..100249Clytia hemisphaericaexon
TCONS_00030279-exon-sc0000805-1491911889:99603..99646TCONS_00030279-exon-sc0000805-1491911889:99603..99646Clytia hemisphaericaexon
TCONS_00030279-exon-sc0000805-1491911889:98741..98812TCONS_00030279-exon-sc0000805-1491911889:98741..98812Clytia hemisphaericaexon
TCONS_00030279-exon-sc0000805-1491911889:96575..97821TCONS_00030279-exon-sc0000805-1491911889:96575..97821Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000805supercontigsc0000805:96575..102947 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.37654	0.717363	0.343065	0.8077	3.0387	2.04038	1.86447	1.47836	3.35015	3.30177	4.55614	2.48888	4.89633	4.17575	3.44584	4.32749	6.78235	10.0286	1.51939	4.51308	14.5901	12.5812	4.12315	6.00627	2.12407	1.68876	3.36585	1.39735	4.3368	5.50564
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00030279 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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