TCONS_00030276 (transcript) - C. hemisphaerica

Overview
NameTCONS_00030276
Unique NameTCONS_00030276
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2667

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00030276 ID=TCONS_00030276|Name=TCONS_00030276|organism=Clytia hemisphaerica|type=transcript|length=2667bp
TGTTATTTGATGACACGATGTATTgttatttttgctgacgtcagctgGAA
TGAGGCCTTTAATAAACGGACTTTCATCAAATTGGTAACAGTTATTTGAA
GATATTGATTAGTACAGAAGGAAGTCATTTATACTTTAAAAGCTGAAATT
GAAGATGaGGACGCTTTCCATATGTGTGGTAGCATTGGTGTCTATTCAGA
TGATGCAACAAACTTCTGTTTCCTGTAACAAAAAATTCAATCCAAACGCC
ATTAAACAACACACGAAAGTACCACATGGTATTATCATAGAGAACACCAT
TAAAAAGCGCATCAAAAATTTCTTCCGAAAAATCAAGGTACCAACGTATA
AAACCTCCATCAGTGGAAAAATTTGCCCGAGAAGATCCTCTTTACTCATT
TCTCGTCAAGTTACCCAGCTCAAAAAGTCGTTAACAAGTTCTACCCATAG
CAAAGGCTTTAGAACCTGTAGCAAGATCATTCTCTGGCCATTCAGAAAAA
CAACTAGCAAGAAACCATTTTATCCAAGACCACCACAGGGCATAATACCA
CCCATGGGTGTCATACCAGATAAAAGACGAGGTCGCTGTGTTATATCGAC
CATGACGACAGAGGAGAGGCGAGCACGAAATGACCTGAACCCTCATGGGG
TCAGGAAAAATCGTATCTGTGTTCGAAAGGAGGGAGCTTGCCAGGAAGTA
GGTGAAACGGATCCACATACTCCAACAATCGCTATGTGTCGATCTTGTCG
TTTCACTGTTTACATCCCTGAAAGtttctttcCAAATTCCTTCATTCATT
TTCAATGTGGCAACGGTGAAGATGCTAAATGTTTAATGTCAGAAGGTGCT
TGTAAGAAGAGACAATTACGTCATCATATCAAAGCTATCGGTCACCGTAA
CAATCGAAATGCCGCTTTAACTATCACAACTGGCTGTGCGTGTGAAATTC
TCGAGAACAGCATGTTTAGGACGTTTGTAAAATagttgaaaaagtttctt
tgtaataaaagtctatttcaaattagctggcagtgttttttcatacctca
ataacttttgataaagtttGAATTATGCAGagtttctgatacaaaaatga
agatcattattctacaagaagttgattttcttcttcctcatttttcattt
tcgtttttccgtcttttgaattttttcttttttgataatattccactccg
gattatctttttaacgagcacaaaaccgctaactaattcaaattctatca
aaaagttattgaggtttgaaaaaacactaccagctaatttgaaatagact
ttacttttatcttaaaaagaaaaatcttcgATGGTgtttgtaaaaagaaa
aatgttgaaacGATCTTTAAACAATCCTCCCTATCTTAAAAGTCTTGTAA
TATTTTGCTTATTTTTGAtgcaaaataagaataatattttctttcatatA
ATTAGCAGAATCTAGATATTTCACAATAAAAGTTGACAATATAGTTCAAA
AGATATACCTAATAGAAAACGGAATACAAAAAGGTTGATATGGCCCAAAT
AATACAGTGTGCACAGAAAAAAATGGAACatattttagaaataaaaaCCT
CATAACACAGAGTATAAGTGATTTTTATTTCTCATGAAGCAATTCAAATT
CATTAgtacaaatgttttttttgcggccttttttacgattttaatttatt
ttctacCTTTTTCTTGGCACACTGTATGTAATCAAATTATAAGTAAATCT
AGTCACAATTAAAGAACAAATGGGTAAATAGCTTTTCTTGAGCGTGGATA
GTCTTTGAACTCTTTGCGATAATTTCTATGCTTTTTCAACGCCCACACAG
TCATCTGGGCGGCACCTACAAAAGCAAAAAGCCCTGATGTCAAAGCTTGT
GTCATGGTAGTGAAGAAGAGCCATGATCCAACTTCGTACGTGTAGTTAGC
GCATGAAACGAATGAAAACATTGCAGTGAAAGGGTTGCCAGTCGGTTTCG
GAATTCGACGTTCTTTCGTTCCCTCTGGTCTCAAATTCCTCAAAGCCACG
TGGCACGAAAAGTTaccaagttgacacaacacgaATCCAGCAAGACTTCC
ATAAATTTGAGCATCTCCATAAGAGGGTGGCGTGTAAAGTGGATGGTTGA
CGAAATATGCAACCATACATGCGAAAAGCCAGTAATAAGATgaatttttg
aagatatttcgAACGGGCATAGTACCATTTGAAAAACGATGAATGAATTG
AGTTTCAAACAATCGTTTAGcataatgaaaacaaaaagcaCCACAAGCAA
TGTGAACAACAGGGTGCATTTGTGCTGCTGCATTTGCACCATAGATGAAA
GATGGTCTCATGTAGAAAATGGGGTACAGGAAAAATGGACCAGCATACTC
TGTCAAAAACACAGTTTTCCAACCAATTTGAGGACCCAAATCTCTGAAAA
AGAGCTTTGCATTATTTTCGAATTCTAAGGATTTTAAGGTTGTGTCATCT
GATAACATTTTACCACGAGGTTCAGTGCGGAATGATTGTCGAGAGGTGTA
ATATTTGGGTTTGGCTTTGCTGAAAGCTTCTTTGATTTCTCCAATAGTCG
CATAGATTGAGACATCATTGAGCTCATGAATGGGTTCTCTTGTACGTGCA
TTGATGATTTCAAcctt
Run BLAST on NCBI

transcript from alignment at sc0000805:50236..63344-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00030276 ID=TCONS_00030276|Name=TCONS_00030276|organism=Clytia hemisphaerica|type=transcript|length=13109bp|location=Sequence derived from alignment at sc0000805:50236..63344- (Clytia hemisphaerica)
TGTTATTTGATGACACGATGTATTGTTATTTTTGCTGACGTCAGCTGGAA TGAGGCCTTTAATAAACGGACTTTCATCAAATTGGTAACAGTTATTTGAA GATATTGATTAGTACAGAAGGAAGTCATTTATACTTTAAAAGCTGAAATT GAAGATGGTAAGTTCCTGCTTAAAAAGCGATTTATTGACCTTTTTATTGC GTAAATTGCACGAATTGGTGGCGCGTTTTAATTTATTTGCAATAGCTGCT TGAAGGAGGTCTTTTTGCAATAAGAATCGGGCTTCTTATTCTTTCTGAAC ATGATTTTGACGGTACTTTGTTATATATGATTTATCCATCACGGCCCCAA AGGTAGTGGCAGGCGGGAAATAAAGTCAACTTCCTCCGGTACCAAATTGA TTTGAAATAAGCAAACAGTTAAAATATGCCATAGTCTATCAATAAACGAA AAACTCACTTCCCCCGAGGAAGCATGTTAGATAAAACTAGGTCTGGAGAG TTAGAGATTACACTCCTGTTGCCAACATATTTGACCGAAAGAAAACTTTA GAAAACTTTTTCTGATTTTAGAGGACGCTTTCCATATGTGTGGTAGCATT GGTGTCTATTCAGATGATGCAACAAACTTCTGTTTCCTGTAACAAAAAAT TCAATCCAAACGCCATTAAACAACACACGAAAGTACCACATGGTATTATC ATAGAGAACACCATTAAAAAGCGCATCAAAAATTTCTTCCGAAAAATCAA GGTACCAACGTATAAAACCTCCATCAGTGGAAAAATTTGCCCGAGAAGAT CCTCTTTACTCATTTCTCGTCAAGTTACCCAGCTCAAAAAGTCGTTAACA AGTTCTACCCATAGCAAAGGCTTTAGAACCTGTAGCAAGATCATTCTCTG GCCATTCAGAAAAACAACTAGCAAGAAACCATTTTATCCAAGACCACCAC AGGGCATAATACCACCCATGGGTGTCATACCAGATAAAAGACGAGGTCGC TGTGTTATATCGACCATGACGACAGAGGAGAGGCGAGCACGAAATGACCT GAACCCTCATGGGGTCAGGAAAAATCGTATCTGTGTTCGAAAGGAGGGAG CTTGCCAGGAAGTAGGTGAAACGGATCCACATACTCCAACAATCGCTATG TGTCGATCTTGTCGTTTCACTGTTTACATCCCTGAAAGGTAAGATATACC ACTGTCTCAGTGCCCTACGGAACATTTTGGCTCATTCCCGTTGGGTGTTG GTGATAATGGTTAATAAGTTTTTTCTCATTTCAATAGTCCTTTTCATAAA TTATTTTGAATCCAACAACTGTCTCGTTTTAAAGCTATTATGTTGAGCGA GATGTCGAGGTGATTAAATCCCTTGAGCCTTCAAATGTTTCTTTTATAAA TCGAGTAAGCTTTGAATGAACTCCCATGGTTTCAGCCCCCCCCTTAAAAT AAGGGGGGACTTAAATTTTTANTTTAATTTCATTCTAATTTTGATTTCAA TTTTATTTCATTTTGATTTCAATTTTATTTCATTTTTAATTTGATTTTGA TTTTAATTTCATTTCATTTTAATTTTAATTTTGATTTCAATTTTATTTTG ATTTTGATTTTGACTTTGATATTAATTTCAATTTAATTTTGGTTTTAAAT CCATTTTCAAATGTTTTTTTTATATTTTTCACTGTTGCACTCCTAGGCCA CCATACATCTCAGCACGAGTTAAGTTCTAAGCAAAGGAACCAATTCTGCT AGTTTGGGTTTTGAGTCACTAAAGTTCACAATATAGTCGAAAAAGCTTGG GTGGAAATAAGGTTTAAAATTCGTCGTTGTCTTTGGAAAGATGTATTCTT TAGTATATATGTGAGCATGAAACTCAAACGGTTTGAGTTTCATAATGTGA GTACATTTTAGAGTGTTCTTCGTAGAAATTTGGTAAAAATTCGGTCGATT TGATTTTTTTCTACCCACACAGGGAACCTCCAATTTCATGTTTCAAGCCT GTATTTTATTTTGCTAAATAGTATCAAAAAAACATGCGCGCAGCCTACTT TTCCCGGGGAGTGCTGTTTACTGTTACAACGGGGGCAAGAACTTTTCACA AGGGCCTGACATGATGAGTTTCTACCTCAGTCTGCTTCTAACTAATTTTC TTGGACACACTGAATCGTACGAGAAAACATATTACCAAGCCGGTTTTGAC TTTCTGAGAAATTATAATTGTGCTACATTGTTTCTAGTATTTTTCTACAC CCGCAGACAACCCGTTGATGAGCACCTACGATGTTCTCCTAACGACTAAT ATTTGATACGATTGGATTCGTCAAAAGTGTTAAGGTCATAAGATATGGTG ATTCAGATTTTCTAAGAAATTATACAATTATAATTTTCTACACGCATGCA AACCGTTGATGAAGACCTACAACAAAGCAACTTCGAAACTGAAGGCATTG CGTAATTTTCTACTGAAATTATTTTTTATTTATAGGCTAAGCCATCAAAC GTCAATACGGCGTCTGGCAGCAATTGCTATTTTGAGGTATCCAGGACAAT CAGAAACTAAAGGAGGTTTTCGACACACCAACACAGGTATTAAGTTAGTT TTCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 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TTAGTATGATAACAAACTTTTTTAAAAAAACTAATAATTTAAGGGGGGAC ATCAAAATATTGGAGTGAAAATTAAGGGGGGAGTACCTTTTAAGGGGCAG CTTTAATAAATTTTGGAAGATAAGGGGGGGAAATGGATAAGGGGTAAATT TCTGTTTTAAGGGGGGACTGAAATCATGGATGAAACCATGACTCCTTTGG GGCTCAATTACCATAGAACTATTCTGAAAACGAGGTAAGTATTGCTCGTG ACGAAACTTATGAAAAGGTTTATATGAATGAGATATATGGCCTTTTCCAA CTGTAGTCAATGTGGTTATTTTTTTGTTTTGTGGGAGGATTTAGTTATGT TATCTTACAAAACCTGATGACTAATGAAAAGGGAAAGTACATGAAGCTGC AGNCCATCAAACGTCAATACGGCGTCTGGCAGCAATTGCTATTTTGAGGT ATCCAGGACAATCAGAAACTAAAGGAGGTTTTCGACACACCAACACAGGT ATTAAGTTAGTTTTCAAACTCCGTTTTATAAAATTGGGCTCATCAAGATT AATTACTTTAATTATTGGAAGCGTGTATGGAATGGATTTTTTTGTGACTA ATCAATTGATCGAGCGAGATTTTTCCAGGAAATACAGGAAATCATTTTAT TTTTAATCAAATCCAGAGGGTTTTGCTTTAGGCTTTCAACTTTCAAAATA AACCCTTAAATTCGTACAGAGTATTAATGAAATTTTTACCAAATTTGAAC AAAAATATTTTCCAACTTTTGCCCATGATGGGTAGGACACACATAGCTCA ATCGATGATGCTGCAAATATCATCTTGTTTCTCTTATTTACTCTTAGGTT CCAAATAAACGGGGGGGATTTGGAAAATTTTTTAAATTTTAATAAACGGG GTGGAAATTGTACTTGCAAAAACCCCAAAATAAGGTAAATATAGGCTAAA AGCAGGCTATTTAGAGCTGAATAACGGACCTTCTCTTTGAAAGCTGATAA AATTCTTAAAAAATAATAAACGGGGGGGGGGGGGNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 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AGCATGTTTAGGACGTTTGTAAAATAGTTGAAAAAGTTTCTTTGTAATAA AAGTCTATTTCAAATTAGCTGGCAGTGTTTTTTCATACCTCAATAACTTT TGATAAAGTTTGAATTATGCAGAGTTTCTGATACAAAAATGAAGATCATT ATTCTACAAGAAGTTGATTTTCTTCTTCCTCATTTTTCATTTTCGTTTTT CCGTCTTTTGAATTTTTTCTTTTTTGATAATATTCCACTCCGGATTATCT TTTTAACGAGCACAAAACCGCTAACTAATTCAAATTCTATCAAAAAGTTA TTGAGGTTTGAAAAAACACTACCAGCTAATTTGAAATAGACTTTACTTTT ATCTTAAAAAGAAAAATCTTCGATGGTGTTTGTAAAAAGAAAAATGTTGA AACGATCTTTAAACAATCCTCCCTATCTTAAAAGTCTTGTAATATTTTGC TTATTTTTGATGCAAAATAAGAATAATATTTTCTTTCATATAATTAGCAG AATCTAGATATTTCACAATAAAAGTTGACAATATAGTTCAAAAGATATAC CTAATAGAAAACGGAATACAAAAAGGTTGATATGGCCCAAATAATACAGT GTGCACAGAAAAAAATGGAACATATTTTAGAAATAAAAACCTCATAACAC AGAGTATAAGTGATTTTTATTTCTCATGAAGCAATTCAAATTCATTAGTA CAAATGTTTTTTTTGCGGCCTTTTTTACGATTTTAATTTATTTTCTACCT TTTTCTTGGCACACTGTATGTAATCAAATTATAAGTAAATCTAGTCACAA TTAAAGAACAAATGGGTAAATAGCTTTTCTTGAGCGTGGATAGTCTTTGA ACTCTTTGCGATAATTTCTATGCTTTTTCAACGCCCACACAGTCATCTGG GCGGCACCTACAAAAGCAAAAAGCCCTGATGTCAAAGCTTGTGTCATGGT AGTGAAGAAGAGCCATGATCCAACTTCGTACGTGTAGTTAGCGCATGAAA CGAATGAAAACATTGCAGTGAAAGGGTTGCCAGTCGGTTTCGGAATTCGA CGTTCTTTCGTTCCCTCTGGTCTCAAATTCCTCAAAGCCACGTGGCACGA AAAGTTACCAAGTTGACACAACACGAATCCAGCAAGACTTCCATAAATTT GAGCATCTCCATAAGAGGGTGGCGTGTAAAGTGGATGGTTGACGAAATAT GCAACCATACATGCGAAAAGCCAGTAATAAGATGAATTTTTGAAGATATT TCGAACGGGCATAGTACCATTTGAAAAACGATGAATGAATTGAGTTTCAA ACAATCGTTTAGCATAATGAAAACAAAAAGCACCACAAGCAATGTGAACA ACAGGGTGCATTTGTGCTGCTGCATTTGCACCATAGATGAAAGATGGTCT CATGTAGAAAATGGGGTACAGGAAAAATGGACCAGCATACTCTGTCAAAA ACACAGTTTTCCAACCAATTTGAGGACCCAAATCTCTGAAAAAGAGCTTT GCATTATTTTCGAATTCTAAGGATTTTAAGGTTGTGTCATCTGATAACAT TTTACCACGAGGTTCAGTGCGGAATGATTGTCGAGAGGTGTAATATTTGG GTTTGGCTTTGCTGAAAGCTTCTTTGATTTCTCCAATAGTCGCATAGATT GAGACATCATTGAGCTCATGAATGGGTTCTCTTGTACGTGCATTGATGAT TTCAACCTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_017336XLOC_017336Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00030276-exon-sc0000805-1575043694:63188..63344TCONS_00030276-exon-sc0000805-1575043694:63188..63344Clytia hemisphaericaexon
TCONS_00030276-exon-sc0000805-1575043694:62157..62773TCONS_00030276-exon-sc0000805-1575043694:62157..62773Clytia hemisphaericaexon
TCONS_00030276-exon-sc0000805-1575043694:50236..52128TCONS_00030276-exon-sc0000805-1575043694:50236..52128Clytia hemisphaericaexon
TCONS_00030276-exon-sc0000805-1510915933:63188..63344TCONS_00030276-exon-sc0000805-1510915933:63188..63344Clytia hemisphaericaexon
TCONS_00030276-exon-sc0000805-1510915933:62157..62773TCONS_00030276-exon-sc0000805-1510915933:62157..62773Clytia hemisphaericaexon
TCONS_00030276-exon-sc0000805-1510915933:50236..52128TCONS_00030276-exon-sc0000805-1510915933:50236..52128Clytia hemisphaericaexon
TCONS_00030276-exon-sc0000805-1491911889:63188..63344TCONS_00030276-exon-sc0000805-1491911889:63188..63344Clytia hemisphaericaexon
TCONS_00030276-exon-sc0000805-1491911889:62157..62773TCONS_00030276-exon-sc0000805-1491911889:62157..62773Clytia hemisphaericaexon
TCONS_00030276-exon-sc0000805-1491911889:50236..52128TCONS_00030276-exon-sc0000805-1491911889:50236..52128Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000805supercontigsc0000805:50236..63344 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.057018 0.109545 0.306207 0.0650713 5.76325 4.62236 30.7568 38.2463 47.9898 49.0699 48.352 31.2199 25.1449 23.7783 9.51837 13.6848 1.68443 3.67698 20.714 25.7708 0.987639 0.965631 0.509495 0.807149 2.90074 2.4413 0.149186 0.65616 3.85489 1.42695
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR0011043-oxo-5_a-steroid_4-DH_C
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
GO:0016021integral component of membrane
Vocabulary: Molecular Function
TermDefinition
GO:0016627oxidoreductase activity, acting on the CH-CH group of donors
Vocabulary: Biological Process
TermDefinition
GO:0006629lipid metabolic process
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006629 lipid metabolic process
cellular_component GO:0005737 cytoplasm
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors
Blast
BLAST of TCONS_00030276 vs. Swiss-Prot (Human)
Match: TECR (Very-long-chain enoyl-CoA reductase OS=Homo sapiens GN=TECR PE=1 SV=1)

HSP 1 Score: 370.548 bits (950), Expect = 4.189e-120
Identity = 176/303 (58.09%), Postives = 219/303 (72.28%), Query Frame = -1
Query: 1765 KVEIINARTREPIHELNDVSIYATIGEIKEAFSKAKPKYYTSRQSFRTEPRGKMLSDDTTLKSLEFENNAKLFFRDLGPQIGWKTVFLTEYAGPFFLYPIFYMRPSFIYGA--NAAAQMHPVVHIACGAFCFHYAKRLFETQFIHRFSNGTMPVRNIFKNSSYYWLFACMVAYFVNHPLYTPPSYGDAQIYGSLAGFVLCQLGNFSCHVALRNLRPEGTKERRIPKPTGNPFTAMFSFVSCANYTYEVGSWLFFTTMTQALTSGLFAFVGAAQMTVWALKKHRNYRKEFKDYPRSRKAIYPFV 2667
            +VEI++A+TRE +  L+ V  +ATI EIK  F+K  P++Y +RQS R +P+GK L D+  L+ L     A L+FRDLG QI W TVFLTEYAGP F+Y +FY R  FIYG   +  +  H VVH+AC    FHY KRL ET F+HRFS+GTMP+RNIFKN +YYW FA  +AY++NHPLYTPP+YG  Q+  +LA FV+CQLGNFS H+ALR+LRP G+K R+IP PT NPFT +F  VSC NYTYEVGSW+ F  MTQ L   LF+ VG  QMT+WA  KHR+Y KEF+DYP  R  I PF+
Sbjct:    5 EVEILDAKTREKLCFLDKVEPHATIAEIKNLFTKTHPQWYPARQSLRLDPKGKSLKDEDVLQKLPVGTTATLYFRDLGAQISWVTVFLTEYAGPLFIYLLFYFRVPFIYGHKYDFTSSRHTVVHLACICHSFHYIKRLLETLFVHRFSHGTMPLRNIFKNCTYYWGFAAWMAYYINHPLYTPPTYGAQQVKLALAIFVICQLGNFSIHMALRDLRPAGSKTRKIPYPTKNPFTWLFLLVSCPNYTYEVGSWIGFAIMTQCLPVALFSLVGFTQMTIWAKGKHRSYLKEFRDYPPLRMPIIPFL 307          
The following BLAST results are available for this feature:
BLAST of TCONS_00030276 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TECR4.189e-12058.09Very-long-chain enoyl-CoA reductase OS=Homo sapien... [more]
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