TCONS_00030262 (transcript) - C. hemisphaerica

Overview
NameTCONS_00030262
Unique NameTCONS_00030262
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length607

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00030262 ID=TCONS_00030262|Name=TCONS_00030262|organism=Clytia hemisphaerica|type=transcript|length=607bp
AGCATCTCCATTATGGAAACGGACCAGCCACCAGTTATTTCACAGGTGAA
GGGAAGATAATCCAAACCAAATCTTCAACAAGGGATCTTGGTGTTACCAT
GTCAGACGATGCGAAATTCAACCAACATATTCTAACCATTGTAGAAAAAG
TACAGATACTCATTGGTTGGATTCTGAGAACATTCAGCTCAAGAGAACAT
GATGTCATGCTCACTCTTTGGAAGTCTTTAGTCATACCACACATCGACAA
CTGTTCTCAACTATGGTCACCCAATGAAGTTAATCTGATCCAGCAGATCG
AAGATCTCCAAAAATCATTCACAAGGAGGATTAAAAACCTACACAACCAA
AACTATTGGGAAAGACTACAAACATTAAAACTGTTTTCACTGCAGAGAAG
GCGTGAAAGATATATTATCATATACACTTGGTGTATTATTGAGAAGCTTG
TCCCAAATCCTGGGACAATCACGTTCTATGCCAATCCCAGAcaaggaaga
aaatgtcacatacCACTAGTGAAAAGGGGGCCCTGGCAAAAAGTCATATA
CTCAAGTTTTAAAGTCCAAGGACCAAGGCTTTTCAACTCGCTGCCAAAAC
GTCTGAA
Run BLAST on NCBI

protein sequence of TCONS_00030262-protein

>TCONS_00030262-protein ID=TCONS_00030262-protein|Name=TCONS_00030262-protein|organism=Clytia hemisphaerica|type=polypeptide|length=201bp
HLHYGNGPATSYFTGEGKIIQTKSSTRDLGVTMSDDAKFNQHILTIVEKV
QILIGWILRTFSSREHDVMLTLWKSLVIPHIDNCSQLWSPNEVNLIQQIE
DLQKSFTRRIKNLHNQNYWERLQTLKLFSLQRRRERYIIIYTWCIIEKLV
PNPGTITFYANPRQGRKCHIPLVKRGPWQKVIYSSFKVQGPRLFNSLPKR
L
Run BLAST on NCBI

transcript from alignment at sc0000803:12483..13089

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00030262 ID=TCONS_00030262|Name=TCONS_00030262|organism=Clytia hemisphaerica|type=transcript|length=607bp|location=Sequence derived from alignment at sc0000803:12483..13089 (Clytia hemisphaerica)
TTCAGACGTTTTGGCAGCGAGTTGAAAAGCCTTGGTCCTTGGACTTTAAA
ACTTGAGTATATGACTTTTTGCCAGGGCCCCCTTTTCACTAGTGgtatgt
gacattttcttccttgTCTGGGATTGGCATAGAACGTGATTGTCCCAGGA
TTTGGGACAAGCTTCTCAATAATACACCAAGTGTATATGATAATATATCT
TTCACGCCTTCTCTGCAGTGAAAACAGTTTTAATGTTTGTAGTCTTTCCC
AATAGTTTTGGTTGTGTAGGTTTTTAATCCTCCTTGTGAATGATTTTTGG
AGATCTTCGATCTGCTGGATCAGATTAACTTCATTGGGTGACCATAGTTG
AGAACAGTTGTCGATGTGTGGTATGACTAAAGACTTCCAAAGAGTGAGCA
TGACATCATGTTCTCTTGAGCTGAATGTTCTCAGAATCCAACCAATGAGT
ATCTGTACTTTTTCTACAATGGTTAGAATATGTTGGTTGAATTTCGCATC
GTCTGACATGGTAACACCAAGATCCCTTGTTGAAGATTTGGTTTGGATTA
TCTTCCCTTCACCTGTGAAATAACTGGTGGCTGGTCCGTTTCCATAATGG
AGATGCT

Coding sequence (CDS) from alignment at sc0000803:12483..13089

>TCONS_00030262 ID=TCONS_00030262|Name=TCONS_00030262|organism=Clytia hemisphaerica|type=CDS|length=603bp|location=Sequence derived from alignment at sc0000803:12483..13089 (Clytia hemisphaerica)
CAGACGTTTTGGCAGCGAGTTGAAAAGCCTTGGTCCTTGGACTTTAAAAC
TTGAGTATATGACTTTTTGCCAGGGCCCCCTTTTCACTAGTGgtatgtga
cattttcttccttgTCTGGGATTGGCATAGAACGTGATTGTCCCAGGATT
TGGGACAAGCTTCTCAATAATACACCAAGTGTATATGATAATATATCTTT
CACGCCTTCTCTGCAGTGAAAACAGTTTTAATGTTTGTAGTCTTTCCCAA
TAGTTTTGGTTGTGTAGGTTTTTAATCCTCCTTGTGAATGATTTTTGGAG
ATCTTCGATCTGCTGGATCAGATTAACTTCATTGGGTGACCATAGTTGAG
AACAGTTGTCGATGTGTGGTATGACTAAAGACTTCCAAAGAGTGAGCATG
ACATCATGTTCTCTTGAGCTGAATGTTCTCAGAATCCAACCAATGAGTAT
CTGTACTTTTTCTACAATGGTTAGAATATGTTGGTTGAATTTCGCATCGT
CTGACATGGTAACACCAAGATCCCTTGTTGAAGATTTGGTTTGGATTATC
TTCCCTTCACCTGTGAAATAACTGGTGGCTGGTCCGTTTCCATAATGGAG
ATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_017322XLOC_017322Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00030262-proteinTCONS_00030262-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00030262-exon-sc0000803-1491911889:12483..13089TCONS_00030262-exon-sc0000803-1491911889:12483..13089Clytia hemisphaericaexon
TCONS_00030262-exon-sc0000803-1510915933:12483..13089TCONS_00030262-exon-sc0000803-1510915933:12483..13089Clytia hemisphaericaexon
TCONS_00030262-exon-sc0000803-1575043694:12483..13089TCONS_00030262-exon-sc0000803-1575043694:12483..13089Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000803supercontigsc0000803:12483..13089 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
16.0774	15.3362	25.4936	23.0662	53.3725	36.6326	36.6544	38.1385	22.0383	20.5085	23.9864	24.1589	17.0618	20.1836	10.288	14.3428	12.7136	11.8226	12.8628	14.1285	17.1476	14.9484	5.43539	7.84989	30.3772	31.2036	10.117	10.7359	8.80089	7.13501
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00030262 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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