TCONS_00030254 (transcript) - C. hemisphaerica

Overview
NameTCONS_00030254
Unique NameTCONS_00030254
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length688

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00030254 ID=TCONS_00030254|Name=TCONS_00030254|organism=Clytia hemisphaerica|type=transcript|length=688bp
tNTTCATCGAGTCCCATCAAAGTTTTATCGACAtgTGTGGAGTATTCTAC
AAAGATCGAAACATGGTTTGACTATGTACACTTACACTTTACCTCAAGAA
CCTGTTTTGACGGAGATGACTGCAGGAGAAACAGCCTTCAGACTGAGAGT
TGAGGAGATGCTCTCACACGCCAAGAAACCTGTACATAGACAAATTATCG
TCGAGctttTAATGATCATATCCACAATATTGAGTCGCAATCCTGAACTC
GTTATTCAAACTGAACTGAGTTTAACCGATATTGTGGACGAGGCAATTGA
TATGttcaaaacacaaaatgaagaaaagAGTAAAGAAGATTTcttcaaac
ttcatccaacggAAAATGGTGGTTCAACGACCTACCTATCACGTGCTTTC
GTCAACAAAATCTTGAACAATAATCCATTGATATTATCTGATGATCTGCA
GAAAAATTGTTCCATTTCTTGAACTCTGATGAATGAGTGTAAAACCTACG
AGTTTGCAGATCTATTCAAACTGCGAAAATATCTGTGGACCTGTCACCTC
CCACCATAACAAGTTTATGTTTTGTTATTCGTGCTAAATTCTATGAAACT
CACCTCACCATATTCTCTCTCTCCCCCTCCCCTCTCCCTctccccctccc
cccgggggggagtactagggcaagatgggttacgggNN
Run BLAST on NCBI

transcript from alignment at sc0000803:79301..81388-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00030254 ID=TCONS_00030254|Name=TCONS_00030254|organism=Clytia hemisphaerica|type=transcript|length=2088bp|location=Sequence derived from alignment at sc0000803:79301..81388- (Clytia hemisphaerica)
TNTTCATCGAGTCCCATCAAAGTTTTATCGACATGGTAAATATTTATTTT
TTTAAGATGTCAACCATAAAAGATTATATTTAATGCGCTTTAGCTGGCTC
TTCATTGAGGCCTAAACTATTTCACCACATATTGGATTGTGAGCTATCTT
TAAATGATTCTTGCTACCCCCTAATAGACAAGTGTGCTGCGACACAGGGA
TCAGCTCACTAAGTTATTGTTTTGTCTTACTGACAGTGTGGAGTATTCTA
CAAAGATCGAAACATGGTTTGACTATGTACACTTACACTTTACCTCAAGA
ACCTGTTTTGACGGAGATGACTGCAGGAGAAACAGCCTTCAGACTGAGAG
TTGAGGAGATGCTCTCACACGCCAAGAAACCTGTACATAGACAAATTATC
GTCGAGGTACAGTTTTATGTTTCATATTTATTTTCTCATTGGTTATGATA
CTGCAGATTTGAGGGTTTATTAAAAATCTTGTTCCTGTCTTCCTCTGCTG
TAAACGTGTTTTCATGCTGCTATGATCTTGTTAAAACCTAACCTAAGTTT
TCATTTTCTTGTCTTTTGAATGTACACAACCAACACTTCAGATTTAGGCC
TGAGTTCCTTTCAAAAAAGACTCAGCTAGTTGAACCAATAATTAATACAA
TGTTCGAGGAATCTGACAAATATTCTACTATGTTATACTCAATAAATCTA
ATCATTGAAATGACCATAGCTTCTTTAATTTTATTTTTTCATTTCAGCTT
TTAATGATCATATCCACAATATTGAGTCGCAATCCTGAACTCGTTATTCA
AACTGAACTGAGTTTAACCGATGTAAGTAAACCTGGGGAGGGTACTTGAT
TTCTAAATGACAGTATCCAATACTGTGCATTCAGCTAAATGGAGACCCTT
ATGGTGCCCTCTATCAAAAGTACATCCTTACAGTGCATTTCGAGGCTCTT
GAAAAACCTACCCTTAAGGGCGGCACATGTCGTGGGTCGGACCATGATTG
CCCCCTCCCCTCCCCGGGAAGTATACGTGTTCTTTCTACCCTACACTCTA
CGAGTCTTTACGAACTATCGAGGGCTTTAAAAGCTTGTTTGAATGTGTGA
ATGGGCTTTTACCTTCTCTGGTTGTTTAGATTTTTTGAAGTCACTATTGA
TATCCAAACATTCTGATTTCTGTTTGTTTATAGATTGTGGACGAGGCAAT
TGATATGTTCAAAACACAAAATGAAGAAAAGGTAAAAAATTTTTTGACAT
TTATCACAGTAATATACTTTAAGGGAATCTAATATCGACAAGAACTAATT
TTGGTGAGTTTCTACAAAACTTAATACACGTATTTCCTATTAGCGGATTC
ATGTAAAAAAGTCACGAAAAACGTCGAGAAAGTCTCTGATTGGCTGAAAT
ATTGCATATACAAGCATATTTTTCCNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNTATGAGGTAATCTTTGCATGCCTCCGCCA
ATCAAAAGTTTGTTTACTCGACGTTTTTTCGTGACTTTTGCATGAATCTG
CTAATAGGAAATAGGTGTATTGTCGCCGAACTCTCCTCGCGTTCCCTTCA
AGGTATTTTGCGTATTTTGTGTTTTCAGAGTAAAGAAGATTTCTTCAAAC
TTCATCCAACGGAAAATGGTGGTTCAACGACCTACCTATCACGTGCTTTC
GTCAACAAAATCTTGAACAATAATCCATTGATATTATCTGATGATCTGCA
GAAAAATTGTTCCATTTCTTGAACTCTGATGAATGAGTGTAAAACCTACG
AGTTTGCAGATCTATTCAAACTGCGAAAATATCTGTGGACCTGTCACCTC
CCACCATAACAAGTTTATGTTTTGTTATTCGTGCTAAATTCTATGAAACT
CACCTCACCATATTCTCTCTCTCCCCCTCCCCTCTCCCTCTCCCCCTCCC
CCCGGGGGGGAGTACTAGGGCAAGATGGGTTACGGGNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_017318XLOC_017318Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00030254-exon-sc0000803-1575043694:81354..81388TCONS_00030254-exon-sc0000803-1575043694:81354..81388Clytia hemisphaericaexon
TCONS_00030254-exon-sc0000803-1575043694:80983..81152TCONS_00030254-exon-sc0000803-1575043694:80983..81152Clytia hemisphaericaexon
TCONS_00030254-exon-sc0000803-1575043694:80567..80641TCONS_00030254-exon-sc0000803-1575043694:80567..80641Clytia hemisphaericaexon
TCONS_00030254-exon-sc0000803-1575043694:80158..80205TCONS_00030254-exon-sc0000803-1575043694:80158..80205Clytia hemisphaericaexon
TCONS_00030254-exon-sc0000803-1575043694:79301..79660TCONS_00030254-exon-sc0000803-1575043694:79301..79660Clytia hemisphaericaexon
TCONS_00030254-exon-sc0000803-1510915933:81354..81388TCONS_00030254-exon-sc0000803-1510915933:81354..81388Clytia hemisphaericaexon
TCONS_00030254-exon-sc0000803-1510915933:80983..81152TCONS_00030254-exon-sc0000803-1510915933:80983..81152Clytia hemisphaericaexon
TCONS_00030254-exon-sc0000803-1510915933:80567..80641TCONS_00030254-exon-sc0000803-1510915933:80567..80641Clytia hemisphaericaexon
TCONS_00030254-exon-sc0000803-1510915933:80158..80205TCONS_00030254-exon-sc0000803-1510915933:80158..80205Clytia hemisphaericaexon
TCONS_00030254-exon-sc0000803-1510915933:79301..79660TCONS_00030254-exon-sc0000803-1510915933:79301..79660Clytia hemisphaericaexon
TCONS_00030254-exon-sc0000803-1491911889:81354..81388TCONS_00030254-exon-sc0000803-1491911889:81354..81388Clytia hemisphaericaexon
TCONS_00030254-exon-sc0000803-1491911889:80983..81152TCONS_00030254-exon-sc0000803-1491911889:80983..81152Clytia hemisphaericaexon
TCONS_00030254-exon-sc0000803-1491911889:80567..80641TCONS_00030254-exon-sc0000803-1491911889:80567..80641Clytia hemisphaericaexon
TCONS_00030254-exon-sc0000803-1491911889:80158..80205TCONS_00030254-exon-sc0000803-1491911889:80158..80205Clytia hemisphaericaexon
TCONS_00030254-exon-sc0000803-1491911889:79301..79660TCONS_00030254-exon-sc0000803-1491911889:79301..79660Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000803supercontigsc0000803:79301..81388 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
8.98177	6.75213	2.63551	6.4801	4.4345	2.82695	3.77265	3.27059	3.34227	3.36565	5.14296	0.984965	2.30082	0.679991	1.05808	1.89851	0.898319	3.62525	0.0191529	1.48747	2.27807	3.73747	5.44999	4.83609	3.2425	3.0693	2.75238	2.15059	5.25588	6.96801
Blast
[Close]
BLAST of TCONS_00030254 vs. Swiss-Prot (Human)
Match: KPBB (Phosphorylase b kinase regulatory subunit beta OS=Homo sapiens GN=PHKB PE=1 SV=3)

HSP 1 Score: 111.309 bits (277), Expect = 3.364e-27
Identity = 59/159 (37.11%), Postives = 95/159 (59.75%), Query Frame = 2 
Query:    5 HRVPSKFYRHVWSILQRSKHGLTMYTYTLPQEPVLTEMTAGETAFRLRVEEMLSHAKKPVHRQIIVELLMIISTILSRNPELVIQTELSLTDIVDEAIDMFKTQN---EEKSKED----FFKLHPTENGGSTTYLSRAFVNKIL-------NNNPLILS 439
            +R P+ FY  VW IL+R+ +G+ +    LPQ+P L++MT  E  F L VE+ L +  +P +RQI+VELLM++S +L RNPEL  Q ++ L  +V EA + F+      +E  K+D    F+   P    G+ +YL++A +N +L       N++P ++S
Sbjct:  935 NRTPTGFYDRVWQILERTPNGIIVAGKHLPQQPTLSDMTMYEMNFSLLVEDTLGNIDQPQYRQIVVELLMVVSIVLERNPELEFQDKVDLDRLVKEAFNEFQKDQSRLKEIEKQDDMTSFYNTPPLGKRGTCSYLTKAVMNLLLEGEVKPNNDDPCLIS 1093
The following BLAST results are available for this feature:
BLAST of TCONS_00030254 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
KPBB3.364e-2737.11Phosphorylase b kinase regulatory subunit beta OS=... [more]
back to top