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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00030247 ID=TCONS_00030247|Name=TCONS_00030247|organism=Clytia hemisphaerica|type=transcript|length=1692bp
ttccttataaaaagcgtgtatgtctTGAACTAAATTTACTTCTGTCAAAA
ATGATTTGGTGTTGTTCATCTCAATCACAGTTCCGACGAAATTCGAGACG
AACCTTTAATGTTGTCTTTACCAAAAAACGATATTATCTTAAATCTATTt
acatttcattaaaaaaattttcttagtcTTAGCAAAAACTaactttaaaa
acaaacattcgGATCTTTATCGACGGTACTCGGTGTCAAAAGAGTCAATA
CGATAACATTGATCTGTATAAAGCACCAGGTTTCATGCTTCAACATTTAA
AGTTCTCATTTCAGttctcaaagtttttcaattctGATGGGGAAACATTT
AAATTTCGATTTCGAACTTCTACGTACACGAATCTAGGATAGCGAAGAAA
AACCAGCCCTTTTTAAACCGTTACATTTTAGCTATTGATTAGTCAAAGTG
ACATTTGTCCCCCGTTCGCGATCAACTCGATTGGATAGAGAAACCGCTCC
ACTTTTTACGATATTGTACATTGACTGAAGGCACTGGTACAGACGCGTTC
ATTTTTGAAGTCGAGTTTTTCACCTGATCTTTCGATTTAACCTTACCACC
ATCCAAATCATTAATATAGTTCGATAAGTGGATATTCTTTGTGGCAACTT
CTTGGTTTATTTTTGGTGCACTCAAGGTAGCATGAGCACTACCTTTCCCA
TCCGAAGATCTGCGAACATAATCCATTATACTTGGAACATGATTGTCTAT
ATGTTTCTGATTCAtattatttttctctgattccatgttattgttgttgt
tcaTATAACGTTCCATGTTACATTTATTATCTTTCACCGTTGATGATATT
ATGTTTTTATTCAAGTCTGTGTTTTCATCTGAAAGCGGTGTCTGCTTTGC
TTCAAAACTGTTGCCACTTATTTCCAACGACTCTGTTATAGTCGGCATGT
AATCACATCTCGGATTGATTGTGCTAAACATGTGTGCTCTGTTCTGCAAA
GTAATTAATAGTTacgcaaaaaaataattcagcgAAAGTTTTCACCGTTC
GTCTTTTTCGTATGTGATTTACAATTAATCAAATATTGAGAAAGATCCAA
TTCCCTGAGCTATCAAATATTTGTATTTGAGCTACCGAgacaattttcct
ttttttgtacCGAGGAAAACTACATCCAATCTTCTTTTGCCTGATAAGAG
ATAGTAAGCTGATTTAAATTGACGAAATCACGTTTTTATCTGCAGTTTAA
ATCTCATTTGTTATGATATCGTCAAAATGTGCATGTCTCTTCAAATTGCA
TTTTCCTCTTATTATCTAATTTGTAAGTTTAATCTTGTAAGGTTGTCCAC
ACACTGCaccaaatgttttcttttctgtgGCCAAACTGTTAAATCACCTT
CTacaaaatttgtttacatttgtgaCCGAAGAATTGCATTACAACGTACT
CAACATTAATACAATACTTTTAAAGACAACTGCATATTATCTATCAAAGA
ACGTTAACGACAAACTGTAATTGGAAGTTGAATGAATGTTATGGAAAAAC
GATTACAGCTCCTATAATTAGATGAAACAAGCTTCCTTCTTGTTGAGCTT
CCCTCTCGATTATTCAACATCCAAATCACGATGCCTGCTTCGATTATCCA
ATATATTAATAGTATCTCTCTtaatgatttttcaagtttttc Run BLAST on NCBI transcript from alignment at sc0000803:122713..124508+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00030247 ID=TCONS_00030247|Name=TCONS_00030247|organism=Clytia hemisphaerica|type=transcript|length=1796bp|location=Sequence derived from alignment at sc0000803:122713..124508+ (Clytia hemisphaerica)
ttccttataaaaagcgtgtatgtctTGAACTAAATTTACTTCTGTCAAAA
ATGATTTGGTGTTGTTCATCTCAATCACAGTTCCGACGAAATTCGAGACG
AACCTTTAATGTTGTCTTTACCAAAAAACGATATTATCTTAAATCTATTt
acatttcattaaaaaaattttcttagtcTTAGCAAAAACTaactttaaaa
acaaacattcgGATCTTTATCGACGGTACTCGGTGTCAAAAGAGTCAATA
CGATAACATTGATCTGTATAAAGCACCAGGTTTCATGCTTCAACATTTAA
AGTTCTCATTTCAGttctcaaagtttttcaattctGATGGGGAAACATTT
AAAGTTCTCCATTAAGttctcaaagtttttcaattctGATGGGGAAACAT
TCAAATTTCTCAATTCAGttctcaaagtttttcaattctGATGGGGAAAC
ATTTAAATTTCGATTTCGAACTTCTACGTACACGAATCTAGGATAGCGAA
GAAAAACCAGCCCTTTTTAAACCGTTACATTTTAGCTATTGATTAGTCAA
AGTGACATTTGTCCCCCGTTCGCGATCAACTCGATTGGATAGAGAAACCG
CTCCACTTTTTACGATATTGTACATTGACTGAAGGCACTGGTACAGACGC
GTTCATTTTTGAAGTCGAGTTTTTCACCTGATCTTTCGATTTAACCTTAC
CACCATCCAAATCATTAATATAGTTCGATAAGTGGATATTCTTTGTGGCA
ACTTCTTGGTTTATTTTTGGTGCACTCAAGGTAGCATGAGCACTACCTTT
CCCATCCGAAGATCTGCGAACATAATCCATTATACTTGGAACATGATTGT
CTATATGTTTCTGATTCAtattatttttctctgattccatgttattgttg
ttgttcaTATAACGTTCCATGTTACATTTATTATCTTTCACCGTTGATGA
TATTATGTTTTTATTCAAGTCTGTGTTTTCATCTGAAAGCGGTGTCTGCT
TTGCTTCAAAACTGTTGCCACTTATTTCCAACGACTCTGTTATAGTCGGC
ATGTAATCACATCTCGGATTGATTGTGCTAAACATGTGTGCTCTGTTCTG
CAAAGTAATTAATAGTTacgcaaaaaaataattcagcgAAAGTTTTCACC
GTTCGTCTTTTTCGTATGTGATTTACAATTAATCAAATATTGAGAAAGAT
CCAATTCCCTGAGCTATCAAATATTTGTATTTGAGCTACCGAgacaattt
tcctttttttgtacCGAGGAAAACTACATCCAATCTTCTTTTGCCTGATA
AGAGATAGTAAGCTGATTTAAATTGACGAAATCACGTTTTTATCTGCAGT
TTAAATCTCATTTGTTATGATATCGTCAAAATGTGCATGTCTCTTCAAAT
TGCATTTTCCTCTTATTATCTAATTTGTAAGTTTAATCTTGTAAGGTTGT
CCACACACTGCaccaaatgttttcttttctgtgGCCAAACTGTTAAATCA
CCTTCTacaaaatttgtttacatttgtgaCCGAAGAATTGCATTACAACG
TACTCAACATTAATACAATACTTTTAAAGACAACTGCATATTATCTATCA
AAGAACGTTAACGACAAACTGTAATTGGAAGTTGAATGAATGTTATGGAA
AAACGATTACAGCTCCTATAATTAGATGAAACAAGCTTCCTTCTTGTTGA
GCTTCCCTCTCGATTATTCAACATCCAAATCACGATGCCTGCTTCGATTA
TCCAATATATTAATAGTATCTCTCTtaatgatttttcaagtttttc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00030247-exon-sc0000803-1491911889:122713..123058 | TCONS_00030247-exon-sc0000803-1491911889:122713..123058 | Clytia hemisphaerica | exon |
| TCONS_00030247-exon-sc0000803-1510915933:122713..123058 | TCONS_00030247-exon-sc0000803-1510915933:122713..123058 | Clytia hemisphaerica | exon |
| TCONS_00030247-exon-sc0000803-1575043694:122713..123058 | TCONS_00030247-exon-sc0000803-1575043694:122713..123058 | Clytia hemisphaerica | exon |
| TCONS_00030247-exon-sc0000803-1491911889:123163..124508 | TCONS_00030247-exon-sc0000803-1491911889:123163..124508 | Clytia hemisphaerica | exon |
| TCONS_00030247-exon-sc0000803-1510915933:123163..124508 | TCONS_00030247-exon-sc0000803-1510915933:123163..124508 | Clytia hemisphaerica | exon |
| TCONS_00030247-exon-sc0000803-1575043694:123163..124508 | TCONS_00030247-exon-sc0000803-1575043694:123163..124508 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000803 | supercontig | sc0000803:122713..124508 + |
Blast
The following BLAST results are available for this feature:
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