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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00030239 ID=TCONS_00030239|Name=TCONS_00030239|organism=Clytia hemisphaerica|type=transcript|length=1146bp
cacCCCATAGAAATAGTCTCTCTGACGTCTCCTTATTCCATATAATATGT
TtgtcataaaataaaatttgtcttTATATGAAAGGTTTGTAAAATACTGC
AGCTTCTTTGCATAATCGGGCAATTGAGCAAATTCGTTCAGCTTTTTTCC
ATCAtacaaatttttcagaatttgaatTTTCGTTTTGTGGTTTAGATCGT
CCTGGAAAACTTTTAATTTCCTTTCATCAGGGAGAAGCGGAAAAgagtac
acttttttataatcaGGCAACCCTAGAAAATATTCAACCTTTTTCTCTTT
GGGGATTTGTGCGAAGTACTGTATTTTGCGGTCCATATTGATACAAAATG
TACCTAGTGGACATTTGTCATCTATACCACAACCTTTTTTCGGAGAACAA
TCTAACTCCATCGTTTTGCAGTAATCCCAATACAATGGTAAAAACCATTT
GCGAATTTTATAACTGTCCGTAACCTTTTTGCCATTTTCACTCTCGATGT
TgtttgcttttaaaatttcatcagTGAATAAATTGACAATAGGTGAGAGT
TTGAACCGTATAGGAAATGGGGAAAAGTTTTCTTTAGACCACGACCTTAT
GTCCTTGGGAGTTGCTCCTTTTGTTACTACTTGACCGATGTAGTCATTTC
CTTCCATTGCACTGAGACTTGTTTGGTCGCTTGATGTACACGAAGATTTA
TCCTCCTCTACTTGAATACCAAAGACTTTTGAACCTTCTACACTATTACA
ACTAGCTAATTTGTCATCGTTGAAGCTTTTCCGAATTTTTCCTGAGTATT
TGTTGATTTGAAAGAACTCAACACCGAGGTAGGATTCTATTAGAAAGTGG
GTTCCGTATTGACCAATAaacattttgaagttttgtttGAGTTGTTTAGC
CTTTTTAGCCGATTCTTGACTGCTAATTTGATTAAATGGCAGTGCAAATT
GATTGGTCTGCTGTGAATGATGTAAACGCCATGCTAAAGACAATGAGGAG
CCTAACGattcgttttctttttctgaTTCAACAGAAACAGCATATAGCTC
GGCAATAGCCTTTTTCAACGGCTCTTTTAATGGCGGATATTCGTAGGCGT
TCAACTTGATGGCATAGTTGAGGCAATGACCCGTTACAATCGCCAC Run BLAST on NCBI protein sequence of TCONS_00030239-protein >TCONS_00030239-protein ID=TCONS_00030239-protein|Name=TCONS_00030239-protein|organism=Clytia hemisphaerica|type=polypeptide|length=382bp
VAIVTGHCLNYAIKLNAYEYPPLKEPLKKAIAELYAVSVESEKENESLGS
SLSLAWRLHHSQQTNQFALPFNQISSQESAKKAKQLKQNFKMFIGQYGTH
FLIESYLGVEFFQINKYSGKIRKSFNDDKLASCNSVEGSKVFGIQVEEDK
SSCTSSDQTSLSAMEGNDYIGQVVTKGATPKDIRSWSKENFSPFPIRFKL
SPIVNLFTDEILKANNIESENGKKVTDSYKIRKWFLPLYWDYCKTMELDC
SPKKGCGIDDKCPLGTFCINMDRKIQYFAQIPKEKKVEYFLGLPDYKKVY
SFPLLPDERKLKVFQDDLNHKTKIQILKNLYDGKKLNEFAQLPDYAKKLQ
YFTNLSYKDKFYFMTNILYGIRRRQRDYFYGV Run BLAST on NCBI transcript from alignment at sc0000802:23305..24450 Legend: exonCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00030239 ID=TCONS_00030239|Name=TCONS_00030239|organism=Clytia hemisphaerica|type=transcript|length=1146bp|location=Sequence derived from alignment at sc0000802:23305..24450 (Clytia hemisphaerica)
GTGGCGATTGTAACGGGTCATTGCCTCAACTATGCCATCAAGTTGAACGC
CTACGAATATCCGCCATTAAAAGAGCCGTTGAAAAAGGCTATTGCCGAGC
TATATGCTGTTTCTGTTGAAtcagaaaaagaaaacgaatCGTTAGGCTCC
TCATTGTCTTTAGCATGGCGTTTACATCATTCACAGCAGACCAATCAATT
TGCACTGCCATTTAATCAAATTAGCAGTCAAGAATCGGCTAAAAAGGCTA
AACAACTCaaacaaaacttcaaaatgttTATTGGTCAATACGGAACCCAC
TTTCTAATAGAATCCTACCTCGGTGTTGAGTTCTTTCAAATCAACAAATA
CTCAGGAAAAATTCGGAAAAGCTTCAACGATGACAAATTAGCTAGTTGTA
ATAGTGTAGAAGGTTCAAAAGTCTTTGGTATTCAAGTAGAGGAGGATAAA
TCTTCGTGTACATCAAGCGACCAAACAAGTCTCAGTGCAATGGAAGGAAA
TGACTACATCGGTCAAGTAGTAACAAAAGGAGCAACTCCCAAGGACATAA
GGTCGTGGTCTAAAGAAAACTTTTCCCCATTTCCTATACGGTTCAAACTC
TCACCTATTGTCAATTTATTCActgatgaaattttaaaagcaaacAACAT
CGAGAGTGAAAATGGCAAAAAGGTTACGGACAGTTATAAAATTCGCAAAT
GGTTTTTACCATTGTATTGGGATTACTGCAAAACGATGGAGTTAGATTGT
TCTCCGAAAAAAGGTTGTGGTATAGATGACAAATGTCCACTAGGTACATT
TTGTATCAATATGGACCGCAAAATACAGTACTTCGCACAAATCCCCAAAG
AGAAAAAGGTTGAATATTTTCTAGGGTTGCCtgattataaaaaagtgtac
tcTTTTCCGCTTCTCCCTGATGAAAGGAAATTAAAAGTTTTCCAGGACGA
TCTAAACCACAAAACGAAAattcaaattctgaaaaatttgtaTGATGGAA
AAAAGCTGAACGAATTTGCTCAATTGCCCGATTATGCAAAGAAGCTGCAG
TATTTTACAAACCTTTCATATAaagacaaattttattttatgacaAACAT
ATTATATGGAATAAGGAGACGTCAGAGAGACTATTTCTATGGGgtg Coding sequence (CDS) from alignment at sc0000802:23305..24450 >TCONS_00030239 ID=TCONS_00030239|Name=TCONS_00030239|organism=Clytia hemisphaerica|type=CDS|length=1146bp|location=Sequence derived from alignment at sc0000802:23305..24450 (Clytia hemisphaerica)
GTGGCGATTGTAACGGGTCATTGCCTCAACTATGCCATCAAGTTGAACGC
CTACGAATATCCGCCATTAAAAGAGCCGTTGAAAAAGGCTATTGCCGAGC
TATATGCTGTTTCTGTTGAAtcagaaaaagaaaacgaatCGTTAGGCTCC
TCATTGTCTTTAGCATGGCGTTTACATCATTCACAGCAGACCAATCAATT
TGCACTGCCATTTAATCAAATTAGCAGTCAAGAATCGGCTAAAAAGGCTA
AACAACTCaaacaaaacttcaaaatgttTATTGGTCAATACGGAACCCAC
TTTCTAATAGAATCCTACCTCGGTGTTGAGTTCTTTCAAATCAACAAATA
CTCAGGAAAAATTCGGAAAAGCTTCAACGATGACAAATTAGCTAGTTGTA
ATAGTGTAGAAGGTTCAAAAGTCTTTGGTATTCAAGTAGAGGAGGATAAA
TCTTCGTGTACATCAAGCGACCAAACAAGTCTCAGTGCAATGGAAGGAAA
TGACTACATCGGTCAAGTAGTAACAAAAGGAGCAACTCCCAAGGACATAA
GGTCGTGGTCTAAAGAAAACTTTTCCCCATTTCCTATACGGTTCAAACTC
TCACCTATTGTCAATTTATTCActgatgaaattttaaaagcaaacAACAT
CGAGAGTGAAAATGGCAAAAAGGTTACGGACAGTTATAAAATTCGCAAAT
GGTTTTTACCATTGTATTGGGATTACTGCAAAACGATGGAGTTAGATTGT
TCTCCGAAAAAAGGTTGTGGTATAGATGACAAATGTCCACTAGGTACATT
TTGTATCAATATGGACCGCAAAATACAGTACTTCGCACAAATCCCCAAAG
AGAAAAAGGTTGAATATTTTCTAGGGTTGCCtgattataaaaaagtgtac
tcTTTTCCGCTTCTCCCTGATGAAAGGAAATTAAAAGTTTTCCAGGACGA
TCTAAACCACAAAACGAAAattcaaattctgaaaaatttgtaTGATGGAA
AAAAGCTGAACGAATTTGCTCAATTGCCCGATTATGCAAAGAAGCTGCAG
TATTTTACAAACCTTTCATATAaagacaaattttattttatgacaAACAT
ATTATATGGAATAAGGAGACGTCAGAGAGACTATTTCTATGGGgtg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00030239-exon-sc0000802-1491911889:23305..24450 | TCONS_00030239-exon-sc0000802-1491911889:23305..24450 | Clytia hemisphaerica | exon |
| TCONS_00030239-exon-sc0000802-1510915933:23305..24450 | TCONS_00030239-exon-sc0000802-1510915933:23305..24450 | Clytia hemisphaerica | exon |
| TCONS_00030239-exon-sc0000802-1575043694:23305..24450 | TCONS_00030239-exon-sc0000802-1575043694:23305..24450 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000802 | supercontig | sc0000802:23305..24450 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR020864 | MACPF |
Blast
The following BLAST results are available for this feature:
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