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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00030199 ID=TCONS_00030199|Name=TCONS_00030199|organism=Clytia hemisphaerica|type=transcript|length=801bp
AATTGAGGAGAATTTCGTCGTCACACTAGCTGTTAAACCTAATATCAGAG
AGGATATGaaagaattttgcaaaaaacacGCAATCAAGTACttgaaaaat
gccaatattAATTTTCTGACTGGTCAGTTCTCCATCGATCTTTCTTTGAT
CACGGCGCGAACGATCAAAGATTTGAAAGATCAGATTTATAAAGTCAAAC
GGATGCCTCCTCACTTGCAAATGATTTTCTATCAAAACGCCGAATTGTCA
GACTCGAATCATCTCACTTCGCTGAGCCACCATGAAGAATCTCTCACTTT
CAATCTGGTCGTTAAACCAAGCAAGGAAGTAGAGCTTTTCATCAATTGTG
TTTTTCTTGACGGTTTGCACATGGATCTTAAAGTGTGCGAAACAGACACG
GTTGTTGACCTCAAAGAAATGGTCAGTCAGAGGTCAGGGATCCCTGCTTC
TTTGATGGTCGCTGGTAGCTATCTAGGTGAACCTGATCATGTACAGATCT
GGGAGACTGGGTTCCAATATGTCTTCCCTGTCGACTTTAACAAGAAAGTT
TTACTGCTAATCAAACGAAAAGGTAAAGAAGTTCAACGTAAAAGCCACCT
CATTCGATATTATGATTATGACACTATCGCAACCCTTTGTGAGGGCGTCC
AGCGAGAATTGGAAGGGGAAGGTCACGTGACTATGAAGAAGAACAGGTTC
AATAGAGGTACATTATTGAAAGATGTTGGTGAAAAAGAAATCACTTTTTT
GGTCAATGCAGACAATAGCAACTGCTCACTCATGTAAATTTTTATCAAGA
T Run BLAST on NCBI protein sequence of TCONS_00030199-protein >TCONS_00030199-protein ID=TCONS_00030199-protein|Name=TCONS_00030199-protein|organism=Clytia hemisphaerica|type=polypeptide|length=261bp
IEENFVVTLAVKPNIREDMKEFCKKHAIKYLKNANINFLTGQFSIDLSLI
TARTIKDLKDQIYKVKRMPPHLQMIFYQNAELSDSNHLTSLSHHEESLTF
NLVVKPSKEVELFINCVFLDGLHMDLKVCETDTVVDLKEMVSQRSGIPAS
LMVAGSYLGEPDHVQIWETGFQYVFPVDFNKKVLLLIKRKGKEVQRKSHL
IRYYDYDTIATLCEGVQRELEGEGHVTMKKNRFNRGTLLKDVGEKEITFL
VNADNSNCSLM Run BLAST on NCBI transcript from alignment at sc0000797:103112..103912 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00030199 ID=TCONS_00030199|Name=TCONS_00030199|organism=Clytia hemisphaerica|type=transcript|length=801bp|location=Sequence derived from alignment at sc0000797:103112..103912 (Clytia hemisphaerica)
ATCTTGATAAAAATTTACATGAGTGAGCAGTTGCTATTGTCTGCATTGAC
CAAAAAAGTGATTTCTTTTTCACCAACATCTTTCAATAATGTACCTCTAT
TGAACCTGTTCTTCTTCATAGTCACGTGACCTTCCCCTTCCAATTCTCGC
TGGACGCCCTCACAAAGGGTTGCGATAGTGTCATAATCATAATATCGAAT
GAGGTGGCTTTTACGTTGAACTTCTTTACCTTTTCGTTTGATTAGCAGTA
AAACTTTCTTGTTAAAGTCGACAGGGAAGACATATTGGAACCCAGTCTCC
CAGATCTGTACATGATCAGGTTCACCTAGATAGCTACCAGCGACCATCAA
AGAAGCAGGGATCCCTGACCTCTGACTGACCATTTCTTTGAGGTCAACAA
CCGTGTCTGTTTCGCACACTTTAAGATCCATGTGCAAACCGTCAAGAAAA
ACACAATTGATGAAAAGCTCTACTTCCTTGCTTGGTTTAACGACCAGATT
GAAAGTGAGAGATTCTTCATGGTGGCTCAGCGAAGTGAGATGATTCGAGT
CTGACAATTCGGCGTTTTGATAGAAAATCATTTGCAAGTGAGGAGGCATC
CGTTTGACTTTATAAATCTGATCTTTCAAATCTTTGATCGTTCGCGCCGT
GATCAAAGAAAGATCGATGGAGAACTGACCAGTCAGAAAATTaatattgg
catttttcaaGTACTTGATTGCgtgttttttgcaaaattctttCATATCC
TCTCTGATATTAGGTTTAACAGCTAGTGTGACGACGAAATTCTCCTCAAT
T Coding sequence (CDS) from alignment at sc0000797:103112..103912 >TCONS_00030199 ID=TCONS_00030199|Name=TCONS_00030199|organism=Clytia hemisphaerica|type=CDS|length=786bp|location=Sequence derived from alignment at sc0000797:103112..103912 (Clytia hemisphaerica)
TTACATGAGTGAGCAGTTGCTATTGTCTGCATTGACCAAAAAAGTGATTT
CTTTTTCACCAACATCTTTCAATAATGTACCTCTATTGAACCTGTTCTTC
TTCATAGTCACGTGACCTTCCCCTTCCAATTCTCGCTGGACGCCCTCACA
AAGGGTTGCGATAGTGTCATAATCATAATATCGAATGAGGTGGCTTTTAC
GTTGAACTTCTTTACCTTTTCGTTTGATTAGCAGTAAAACTTTCTTGTTA
AAGTCGACAGGGAAGACATATTGGAACCCAGTCTCCCAGATCTGTACATG
ATCAGGTTCACCTAGATAGCTACCAGCGACCATCAAAGAAGCAGGGATCC
CTGACCTCTGACTGACCATTTCTTTGAGGTCAACAACCGTGTCTGTTTCG
CACACTTTAAGATCCATGTGCAAACCGTCAAGAAAAACACAATTGATGAA
AAGCTCTACTTCCTTGCTTGGTTTAACGACCAGATTGAAAGTGAGAGATT
CTTCATGGTGGCTCAGCGAAGTGAGATGATTCGAGTCTGACAATTCGGCG
TTTTGATAGAAAATCATTTGCAAGTGAGGAGGCATCCGTTTGACTTTATA
AATCTGATCTTTCAAATCTTTGATCGTTCGCGCCGTGATCAAAGAAAGAT
CGATGGAGAACTGACCAGTCAGAAAATTaatattggcatttttcaaGTAC
TTGATTGCgtgttttttgcaaaattctttCATATCCTCTCTGATATTAGG
TTTAACAGCTAGTGTGACGACGAAATTCTCCTCAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00030199-exon-sc0000797-1491911889:103112..103912 | TCONS_00030199-exon-sc0000797-1491911889:103112..103912 | Clytia hemisphaerica | exon |
| TCONS_00030199-exon-sc0000797-1510915933:103112..103912 | TCONS_00030199-exon-sc0000797-1510915933:103112..103912 | Clytia hemisphaerica | exon |
| TCONS_00030199-exon-sc0000797-1575043694:103112..103912 | TCONS_00030199-exon-sc0000797-1575043694:103112..103912 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000797 | supercontig | sc0000797:103112..103912 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
Blast
The following BLAST results are available for this feature:
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