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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00030182 ID=TCONS_00030182|Name=TCONS_00030182|organism=Clytia hemisphaerica|type=transcript|length=3414bpRun BLAST on NCBI protein sequence of TCONS_00030182-protein >TCONS_00030182-protein ID=TCONS_00030182-protein|Name=TCONS_00030182-protein|organism=Clytia hemisphaerica|type=polypeptide|length=914bp FSTMVKIILASCLVLSVVNVLNCVDRGNFKTCDQSSFCKRNRALQEGNSPRun BLAST on NCBI transcript from alignment at sc0000797:46904..59889- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00030182 ID=TCONS_00030182|Name=TCONS_00030182|organism=Clytia hemisphaerica|type=transcript|length=12986bp|location=Sequence derived from alignment at sc0000797:46904..59889- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000797:46904..59889- >TCONS_00030182 ID=TCONS_00030182|Name=TCONS_00030182|organism=Clytia hemisphaerica|type=CDS|length=54900bp|location=Sequence derived from alignment at sc0000797:46904..59889- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00030182 vs. Swiss-Prot (Human)
Match: GANAB (Neutral alpha-glucosidase AB OS=Homo sapiens GN=GANAB PE=1 SV=3) HSP 1 Score: 920.613 bits (2378), Expect = 0.000e+0 Identity = 451/910 (49.56%), Postives = 606/910 (66.59%), Query Frame = 2
Query: 74 DRGNFKTCDQSSFCKRNRALQEGNSPFEIIPGTIKYEYGTVSCDLLNTQTQVSFKLTIDTLEKDTARVRVTELSPIRPRYFVHDSLVKTPAQKRLKKETSEDGTFKVSF--GNNVIVGTYKPLRIDFYDSEVLVLSFNSRGLMNFEHYRTKQXXXXXXXXXXXXXXX-----------XXXXXXXXXXXXGMWEENFKEHHDSKPNGPSSVGMDVSFLGFEHVYGIPEHADSFALKETTGGDPYRLYNLDVFEYELDNPMALYGSIPFMVAHSARRSVGLFWNNAAETWXXXXXXXXXXX----XXXXXXXTADVPQVDTHWMSESGIMDVFVLMGPKPSDVLTQYATLTGTATMPPVFGISYHQCRWNYNDQEDVKQVDAGFDEHDIPCDVIWLDIEHTDSKKYMTWDSSKFPNPTEMIDNVASKGRKMVTIIDPHIKRDSGYHIHTQATERQFYVKKKEASDYEGWCWPGSSSWIDFFNPEAQKWWASNLQVGNYQGSTLNLFTWNDMNEPSVFNGPEVTMHKDAIHYGNWEHRDVHNLYGMLQHKSSFNGQLQRSDNKERPFILSRAFFAGTQRYGAVWTGDNKAEWSHLKASIPMLLSMNIAGLPFVGADVGGFFGNPDVELLVRWYQTASFTPFYRGHAHLETKRREPWLFGPENTKLIRSAIRRRYLLLPYFYNLMRETHETGLPVMRPLWFEYPEDTKTFAMDDQFLLGDSLLVKPVTSSGTTDVLVYFPGGESQVWYDFDTYKKHAGGITDSIPTPMDKIPSFIRGGRMLPIKQRVRRASSLMANDPYTLIFALDNNSAASGSLYVDDGHSNDYKHGKHLAI---DFRMTATQINKVDKHANYDSKSWIEKIIVLGMKTKPSSATLIYTDNVQ-QLSFTY--ENEVLIIKKPVSTIVGNFVI 2734
DR NFKTC++SSFCKR R+++ G SP+ + +++ +++ L++ T+V L + L+K+ R R+ EL P RPRY V D LV P RL ++ + +++ G I+ T +P R+D + L+LS N+RGL+ FEH R + + G+ + EET + KDE G WEE FK H DSKP GP SVG+D S G EHVYGIPEHAD+ LK T GG+PYRLYNLDVF+YEL NPMALYGS+P ++AH+ R +G+FW NAAETW+DI S+ + + + L + + PQ D WMSE+GI+DVF+L+GP SDV QYA+LTGT +PP+F + YHQ RWNY D+ DV +VD GFD+H++PCDVIWLDIEH D K+Y TWD S+FP P M++ +ASK RK+V I+DPHIK DSGY +H + YVK ++ SDYEGWCWPGS+ + DF NP + WWA+ NY+GS NLF WNDMNEPSVFNGPEVTM KDA HYG WEHRDVHN+YG+ H ++ +G QRS ERPF+L+RAFFAG+QR+GAVWTGDN AEW HLK SIPM LS+ + GL F GADVGGFF NP+ ELLVRWYQ ++ PF+R HAHL+T RREPWL ++ +IR A+ +RY LLP++Y L+ + H G+PVMRPLW +YP+D TF +DDQ+LLGD+LLV PV+ SG V VY P G+ +VWYD +Y+KH G T +P + IP F RGG ++P RVRR+S M +DP TL AL A G L++DDGH+ +Y+ + + F + D ++++ WIE+++++G KP++ L + + +LSF + E VL+++KP + ++ I
Sbjct: 34 DRSNFKTCEESSFCKRQRSIRPGLSPYRALLDSLQLGPDSLTVHLIHEVTKVLLVLELQGLQKNMTRFRIDELEPRRPRYRVPDVLVADPPIARLSVSGRDENSVELTMAEGPYKIILTARPFRLDLLEDRSLLLSVNARGLLEFEHQRAPRVSQGSKDPAEGDGAQPEETPRDGDKPEETQGKAEKDEPGAWEETFKTHSDSKPYGPMSVGLDFSLPGMEHVYGIPEHADNLRLKVTEGGEPYRLYNLDVFQYELYNPMALYGSVPVLLAHNPHRDLGIFWLNAAETWVDISSNTAGKTLFGKMMDYLQGSGETPQTDVRWMSETGIIDVFLLLGPSISDVFRQYASLTGTQALPPLFSLGYHQSRWNYRDEADVLEVDQGFDDHNLPCDVIWLDIEHADGKRYFTWDPSRFPQPRTMLERLASKRRKLVAIVDPHIKVDSGYRVHEELRNLGLYVKTRDGSDYEGWCWPGSAGYPDFTNPTMRAWWANMFSYDNYEGSAPNLFVWNDMNEPSVFNGPEVTMLKDAQHYGGWEHRDVHNIYGLYVHMATADGLRQRSGGMERPFVLARAFFAGSQRFGAVWTGDNTAEWDHLKISIPMCLSLGLVGLSFCGADVGGFFKNPEPELLVRWYQMGAYQPFFRAHAHLDTGRREPWLLPSQHNDIIRDALGQRYSLLPFWYTLLYQAHREGIPVMRPLWVQYPQDVTTFNIDDQYLLGDALLVHPVSDSGAHGVQVYLP-GQGEVWYDIQSYQKHHGPQTLYLPVTLSSIPVFQRGGTIVPRWMRVRRSSECMKDDPITLFVALSPQGTAQGELFLDDGHTFNYQTRQEFLLRRFSFSGNTLVSSSADPEGHFETPIWIERVVIIG-AGKPAAVVLQTKGSPESRLSFQHDPETSVLVLRKPGINVASDWSI 941 The following BLAST results are available for this feature:
BLAST of TCONS_00030182 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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