|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00030173 ID=TCONS_00030173|Name=TCONS_00030173|organism=Clytia hemisphaerica|type=transcript|length=2384bpRun BLAST on NCBI protein sequence of TCONS_00030173-protein >TCONS_00030173-protein ID=TCONS_00030173-protein|Name=TCONS_00030173-protein|organism=Clytia hemisphaerica|type=polypeptide|length=523bp MSLSSVLPPPNYAQQFEDDFSDEDEPAPSKMQLARTGPPPYMHRQGWVPRRun BLAST on NCBI transcript from alignment at sc0000797:1951..19729- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00030173 ID=TCONS_00030173|Name=TCONS_00030173|organism=Clytia hemisphaerica|type=transcript|length=17779bp|location=Sequence derived from alignment at sc0000797:1951..19729- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000797:1951..19729- >TCONS_00030173 ID=TCONS_00030173|Name=TCONS_00030173|organism=Clytia hemisphaerica|type=CDS|length=18864bp|location=Sequence derived from alignment at sc0000797:1951..19729- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00030173 vs. Swiss-Prot (Human)
Match: SNW1 (SNW domain-containing protein 1 OS=Homo sapiens GN=SNW1 PE=1 SV=1) HSP 1 Score: 496.893 bits (1278), Expect = 1.148e-166 Identity = 312/517 (60.35%), Postives = 383/517 (74.08%), Query Frame = 1
Query: 187 MSLSSVLPPPNYXXXXXXXXXXXXXXXXXK---MQLARTGPPPYMHRQGWVPRSQADFGDGGAFPEIMVAQFPLGMGFEKKEKSNALPVQMDAEGRIKFDDLLRQGTRKDKVIHSKFTDLVEKQIKADDDDPELARPDEEKMKEIADKTRMALEKTVNDXXXXXXXXXXXXXXGESQYIRYTPSQGGVMFNSGAKQRVIRMVEAQRDPMEPPRFKTNKKIPRGXXXXXXXXXXXXTRKTTVKEQQEWKIPPCISNWKNPKGYTIPLDKRLAADGRGLQDPHINDKFAKLAESLYIADRKAREAVEVRANLVRXXXXXXXXXXEQMLSNLAEEARKKRSGLSSAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----XXXXXXEDRDVSEKIALGLPNAGVSSETMYDQRLFDGEAGMSSGF--GEDDAYNVYSQPWK--KDTS-SIYRPSKNLDKDIVGDDLESLIKTKRFAPDKGFSGVD-GSNARSGPVQFEKDEEDIFNVDQLLEDAKLGG 1698
M+L+S LP P Q + + ++ S+ + +R PPPY +R+GW+PR DFGDGGAFPEI VAQ+PL MG KK+ SNAL +Q+D+EG+IK+D + RQG KDKVI+SK+TDLV K++ + DDP+L RPDEE +KEI +KTR+ALEK+V+ K+AAA PV+AA K +QYIRYTPSQ GV FNSGAKQRVIRMVE Q+DPMEPPRFK NKKIPRGPPSPPAPVMHSP+RK TVKEQQEWKIPPCISNWKN KGYTIPLDKRLAADGRGLQ HIN+ FAKLAE+LYIADRKAREAVE+RA + RK AQ++K+K E+ L +A++AR++R+G+ + +D RE ++R + S SK +R+E+RD+SE IALG+PN S+E YDQRLF+ GM SGF GED+ YNVY Q W+ KD + SIYRPSKNLDKD+ GDDLE+ IKT RF PDK FSG D R GPVQF EED F +D+ LE+AK G
Sbjct: 1 MALTSFLPAPTQLSQDQLEAEEKARSQRSRQTSLVSSRREPPPYGYRKGWIPRLLEDFGDGGAFPEIHVAQYPLDMG-RKKKMSNALAIQVDSEGKIKYDAIARQGQSKDKVIYSKYTDLVPKEV-MNADDPDLQRPDEEAIKEITEKTRVALEKSVSQKVAAAMPVRAADKLAPAQYIRYTPSQQGVAFNSGAKQRVIRMVEMQKDPMEPPRFKINKKIPRGPPSPPAPVMHSPSRKMTVKEQQEWKIPPCISNWKNAKGYTIPLDKRLAADGRGLQTVHINENFAKLAEALYIADRKAREAVEMRAQVERKMAQKEKEKHEEKLREMAQKARERRAGIKTHVEKEDGEARERDEIRHDRRKERQHDRNLSRAAPDKRSKLQRNENRDISEVIALGVPNPRTSNEVQYDQRLFNQSKGMDSGFAGGEDEIYNVYDQAWRGGKDMAQSIYRPSKNLDKDMYGDDLEARIKTNRFVPDKEFSGSDRRQRGREGPVQF---EEDPFGLDKFLEEAKQHG 512 The following BLAST results are available for this feature:
BLAST of TCONS_00030173 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2026, MARIMBA.