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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00030157 ID=TCONS_00030157|Name=TCONS_00030157|organism=Clytia hemisphaerica|type=transcript|length=3930bpRun BLAST on NCBI protein sequence of TCONS_00030157-protein >TCONS_00030157-protein ID=TCONS_00030157-protein|Name=TCONS_00030157-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1075bp MMLYLVLTLLLPCTDAWFNFNFKLAHKTYGLDDFPLIYDSILRDRATIAKRun BLAST on NCBI transcript from alignment at sc0000796:112997..125003- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00030157 ID=TCONS_00030157|Name=TCONS_00030157|organism=Clytia hemisphaerica|type=transcript|length=12007bp|location=Sequence derived from alignment at sc0000796:112997..125003- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000796:112997..125003- >TCONS_00030157 ID=TCONS_00030157|Name=TCONS_00030157|organism=Clytia hemisphaerica|type=CDS|length=32280bp|location=Sequence derived from alignment at sc0000796:112997..125003- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00030157 vs. Swiss-Prot (Human)
Match: HMCN2 (Hemicentin-2 OS=Homo sapiens GN=HMCN2 PE=2 SV=3) HSP 1 Score: 178.333 bits (451), Expect = 9.440e-45 Identity = 117/359 (32.59%), Postives = 163/359 (45.40%), Query Frame = 2
Query: 2234 SFGEECDINKKKYCAALQKCERTPVGDRCKCENGYRF-SKDRTCIDLDECLFTNVTCHKNAECINTKGSFECACRTGFT--GDGYSCTNINECEKGTHNCHEHATCIDTEGAFTC--TCKLGYE-GNGRECKDVDECITGLHNCHRHAECSNVEGSFNCECKKGFAGEGGRF-CLDVDECERNEDNCPAQSQCVNTLGSFKCNCISPSVLTDDGKTCGQCRQN--------------------------------NLRNCHLDAICLAGYCVCNDGY-RGNGKTCEDINECIETPNVCGRGRCSNTKGNFDCTCVNGYRSTPTVKKCIDIDECSEPRGHLLCNGTSEVCTNTDGGYACV 3190
+F E + + + ALQ E VG C G+ S+ C+D DEC C + C+N G F C C TGF D +C +++EC H C E C++ G++ C C G+ +G C+DVDEC+ GL +CH + C N G C C +G+ +G CLDV+EC + C QC N GS++C C L DGK C +N +LR + A+ G C G+ R NG C D++EC N+C C NT+G++ C C GYR P+ K C DI+EC E + C G ++C NT G Y CV
Sbjct: 4588 AFDPEAEALRFQLATALQ-AEENEVG----CPEGFELDSQGAFCVDRDECSGGPSPC--SHACLNAPGRFSCTCPTGFALAWDDRNCRDVDECAWDAHLCREGQRCVNLLGSYRCLPDCGPGFRVADGAGCEDVDECLEGLDDCHYNQLCENTPGGHRCSCPRGYRMQGPSLPCLDVNECLQLPKAC--AYQCHNLQGSYRCLCPPGQTLLRDGKACTSLERNGQNVTTVSHRGPLLPWLRPWASIPGTSYHAWVSLRPGPM-ALSSVGRAWCPPGFIRQNG-VCTDLDEC-RVRNLCQHA-CRNTEGSYQCLCPAGYRLLPSGKNCQDINECEEES--IEC-GPGQMCFNTRGSYQCV 4930 The following BLAST results are available for this feature:
BLAST of TCONS_00030157 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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