TCONS_00030156 (transcript) - C. hemisphaerica

Overview
NameTCONS_00030156
Unique NameTCONS_00030156
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3930

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00030156 ID=TCONS_00030156|Name=TCONS_00030156|organism=Clytia hemisphaerica|type=transcript|length=3930bp
gttttttatctctttttttgtttttgtattttaatatgATATTGTAATAT
GTCTTACGTAACCCTTTTTAATGGCTACCAGAAGTCATTAGGAAAATtca
attcattttcttttgtatGTGAATCGAATGTCGTAATTTGTTAGAATGTT
GACGGTATCTAGAGAcaaatgaaaatctaatttgTACTTTTTTGTATGCT
GGTTTAGTCAGTTGgtaggaaaatttaaaaaaataaaatagaaaataaaa
aagaagaaatcatataCTGGGAACGAATGCAAATTTAAAGCAAGTATGAT
GTTATACTTGGTGTTAACGTTACTGTTGCCATGCACTGATGCTTGGTTTA
ACTTCAACTTCAAGTTGGCACACAAAACCTATGGATTAGATGACTTCCCT
TTGATTTACGACTCCATCCTTCGTGATCGAGCAACAATCGCCAAACTGGA
TAAGGAGAAGGCCCTGAAATTCCGATTCGATGACTTCTTACAACATTGTA
CAGAGCTGGATTGGACGGAGAAACTCCAACACTATTTTCACCGAAACAAT
TTCGATGAAAACGATATCCAATACCTTCGAACCATGAATATCTCTTATCT
AATGAACCAAATGCCAAGATTCAACTTGGACCAATTTTGGAATGCACCAA
TCAAGACATTAGTCTACCGAACCGCGTATTATTTTTCTCCAAATGGTACT
AAAGAGACTTTCGAGCTTTTACagaaaatctatttcaaaaatgatattGA
TGTTGCCAAGAAAATTAACCAATTCCAAGCTCAATACCCAAATGCCACTT
ATATTCAACGACAAGAGAAAACAGCAATCAATAAACGTATATTAGAATTG
ATTGAAATTATCCAATTTGATGAAACTAAGGATCTACTCAAGCTCTTCAA
CGTGACAAATCAGTTAAACTATCTCACCGGGCTAAGTTTCGATTATGTCA
ATAAGGTGACATCAAGATTGATTTACTACTCTATCCAACGTGATACCAAA
ATGAAGGAAGAATACACGACCAGAGTTAATGCAATCACCAGTAAGATTCA
GCTCCTTCATTCAAGTGTTTATCACTGGGCTTTAACATGCTGGACAAGTA
TCAAGCCAGTAGACTTCAAAACAACAACTTTAGATTCAATCTCAGAGCGA
TGTTTCAATTTACCCTTCTCCCAGACTGCTCATACCTTATATGGTATCAA
TAAAGAACGCGGACGATTCTTGGGTAAATTTGATATGTCATCTGCAAGTA
TTATTGCTCAGTCGCCATTCCAAAATACAACTCTTCAACCTGCCAGAAGC
TTCATTGATAAGATGAATGGTGGTCTGCAGAAGATTGACAAATCTAAGGA
GTTACCGTATTACGAATACGCCAGATCTACTCATATCTCATGGAAAGAAA
TTGAATCAAATCCTATTAGTGTTATTCTGGAAAGAATCCAAGGTTTGCCA
TGGAGTGTCCTACAAAAAGCATACGGTGTCTCGGAAGCGTCTCTCAATTC
ACTCCAGTTCATCCCATTTATCAGTTTAGAAGCTCTGGTAGTAAAAGGTA
CCAAAAGTTCATTCCTGGTGGGTGTCAGACGTCTCCGGACCGTATCTGCT
CAAACTATTTTCGCAGCAATGGAacaaaaaagtaatgaaatagCTTTGAG
AGCAGCCTACAAAGCTAATGTCTTGGCCTTAGCCGATAAACCATTGTTAT
CACTGAAATACCTTTACCTCTTGAAACAAGACACGATGAAAGAGCAAACT
CTATTCAATGTCTGTAATGAAATGTTTGGCATACGTTTAGAAGAGTTTCT
ACAATATTTCGGTATCGATTCTAAAGCATCAGATTTCTTCAAAGCAACTA
TTCTCCGTGATTATGCATCTTTGCTTGGTCTTGAGTACTCCGGTATGGAA
CGATTCAGTATCAAACAAATTGTCAATCAGATCAAACCTGACTGGACATT
TGCCGAAGCTATGTTGGTCTCGCCAACCGCATTTATTAAAGAAGGTGAAA
GCACATTGGAAGAAAACCTTCGGTTTAGTATTCCACAAATTGTCGATACC
TATCATAAACCAATCGATTCTGCACAAGCTTTTACCGCATACATTAAAGT
TTGGTCAAAATCTGATGAAACTTCAAGAATTGTTAAAgaagaaagtttga
aacaacTTGGTCAAAGGTTGAAGATTGAAATCACAGTCTTAGCTGGCATG
AAAATTATTGATATCATCAACACTGTGGTCATTTCTTTCGGAGAGGAATG
CGACATCAACAAAAAGAAATACTGTGCAGCTTTACAGAAATGTGAACGAA
CACCAGTTGGTGATCGGTGCAAATGTGAAAATGGATACCGATTCAGTAAA
GATAGAACATGTATTGATCTCGATGAATGTTTATTCACAAATGTGACGTG
CCATAAGAACGCTGAGTGTATCAACACCAAAGGTTCATTCGAATGTGCTT
GCAGAACTGGATTCACCGGAGATGGCTATAGTTGTACCAATATCAACGAA
TGTGAAAAAGGCACGCATAATTGTCACGAACACGCTACGTGTATTGATAC
GGAAGGAGCATTCACGTGTACTTGTAAATTAGGATATGAGGGGAATGGGC
GCGAATGTAAAGATGTGGATGAATGCATTACTGGTCTTCATAATTGTCAT
CGACATGCTGAATGCAGTAATGTGGAAGGCTCGTTCAATTGTGAATGTAA
GAAAGGATTTGCAGGAGAAGGTGGTCGCTTTTGTTTGGATGTTGATGAGT
GTGAACGAAATGAAGATAATTGTCCTGCGCAATCACAATGTGTTAATACG
TTAGGTAGTTTCAAATGCAATTGCATCTCACCAAGCGTGTTGACGGATGA
TGGGAAAACATGTGGACAATGTCGACAAAATAATCTACGAAATTGCCATT
TGGATGCTATTTGTCTGGCAGGTTATTGTGTTTGTAATGATGGATATAGA
GGGAATGGAAAGACATGTGAAGATATCAACGAATGCATTGAAACACCAAA
TGTTTGTGGAAGAGGAAGATGCAGTAACACAAAAGGTAATTTCGATTGCA
CATGCGTAAACGGTTACCGATCGACACCGACAGTTAAGAAATGTATTGAT
ATCGATGAATGTAGTGAACCGCGTGGTCATTTGTTATGTAACGGAACAAG
TGAAGTGTGCACTAACACTGATGGTGGTTACGCATGCGTCACTGTCAAAT
CAGACAAAGCAGTCAAGATCGCCCTGGGAACGGCTATTCCACTTATTGTT
ATCATGTTCATTGGTTTGTTTATCTTCTGGTGGATGCATCGTAAGAACCA
AGGGAAAAAAGAATTGGACGATTTCGATAAGAAATTACGACAAATGTACG
TCAATGATGCTTTCACACGTGACGATGAAAGTCAAGTCAGTGATCGATCA
TCACGACCAATTGCACCTAGAAATCAACGGATGAGCGTCAATAACTTTTT
AGGTGCCAGTAAAACTTTTAtgaatctttttaaatctgatgaacCAGAGG
AGATGAAGAAAACTGAATATTAAATGAAACAACAAATTGAATAAACAATG
GTTACAAGAATCTATAAAGTTACATATCGCTGTTGGAGTTAGAGTGATAC
GATCACAAGAACATCCCAGAAAATTAGAGTTACTCGGGATAACTCAACCC
TTTTAATTAGTGTTATTCAAAGGCTCAAACGTACACCTGAAGCAATAACG
AATGACAAAATCCTACAAaacttatgatttttataaaattttacttGTAT
CATACAGAATTATCTTATGCTTTCTCTATATTACTGTGGAAATAGCCATT
CTACTACCACCTTATAGTCCATTCCTGTTGGACTATTACACCTTGATATT
TTAAGGTCTAAGAGTACCTTAACTAAACcacaaaaatttcttgaaaggTT
ACAAAAATTAAGTAAAGCCCTGAGAGGATC
Run BLAST on NCBI

transcript from alignment at sc0000796:112997..125003-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00030156 ID=TCONS_00030156|Name=TCONS_00030156|organism=Clytia hemisphaerica|type=transcript|length=12007bp|location=Sequence derived from alignment at sc0000796:112997..125003- (Clytia hemisphaerica)
GTTTTTTATCTCTTTTTTTGTTTTTGTATTTTAATATGATATTGTAATAT
GTCTTACGTAACCCTTTTTAATGGCTACCAGAAGTCATTAGGAAAATTCA
ATTCATTTTCTTTTGTATGTGAATCGAATGTCGTAATTTGTTAGAATGTT
GACGGTATCTAGAGACAAATGAAAATCTAATTTGTACTTTTTTGTATGCT
GGTTTAGTCAGTTGGTAGGAAAATTTAAAAAAATAAAATAGAAAATAAAA
AAGAAGAAATCATATACTGGGAACGAATGCAAATTTAAAGCAAGGTATGT
ATTATAATCAGTGCCGTAGGAAGCATTTCCATATTGGGGGGGGGGCNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAAAAAGAAAAACTTT
GTATTTTGCAAAATAACCATTTTTGAAAAAATTATTGGGGGGGCATAGCC
CCCCCTTGCCCCCCCAGTTGCTACGGCACTGATAATTAAAACCGATTTTG
AATTTTCCTATGTTACAATTATTTTAGCTTGATAAAAATCAAGGGTTTAA
ATTAAGCTTGATAAAAATCAAGGGTTTTAAGTTTAGACGAAAAGCTAACT
CTCCCTTTGTCTCTTATTCTCATTTTTGTAATGAATTTCATAATACACTT
CGATTGTTGATAGTATATTTGGTAGTATACCTGTTAGTGGCAAGTCATTA
AGCTAAAATTGATCCAGCTAGGGGATTTTAATCTTAACTTTGTTTCCTTT
GGGATTCACGATTTTAAATATTTTGTGCCTGAAAATTTTTAAATCATGAA
ATTTCTACTACGTACAAGAAAAATATTTGATCCAAGGCAAAGGCTAATCA
AGAAAATAAAGTCCTACAATTAAATAGGAATTGAAACATGATTTTAATTA
GTAAACACAACATTACGAGTAGTATGTTATTTATTTCTCCCACTGAACAA
TCAAAAAACACGTAACGCTGCCAAAAATATTTCATTAAAAAAGCTTCCTT
ACCTCCATACAGTCTTATATAATCGATCATTAATTGTTCATTATTTTTAG
TATGATGTTATACTTGGTGTTAACGTTACTGTTGCCATGCACTGATGCTT
GGTTTAACTTCAACTTCAAGTTGGCACACAAAACCTATGGATTAGATGGT
AAGAAATGTAAAATATAAAACACTACAGTATCAGAAACCATAGGAAAAAT
AAATTGGCCAAATATTATATCCTTATTTTTGAGCGTGTCGCTAATTAAGG
CCTAATGTTAAAGGACCGGTGGGAACGAAAGTTTCTATCAAAATCCAAAT
AGGGATAGAAAATCTATCCTTATTCCAGCTCAATAACGCCAGTTGCAATT
AGGCGCACTTTTTTTTTAATGATGAAATTATAGTTCTCTGAATTATCTTT
CCAACGGTATTTTTTATGTTAGGACTAAGCATTCGTTGAAAATGGCAAGA
AAAACTCAATATGTTTTTTATTCTATCAAAAATAAAAAAATATTTAAGTT
TTTTCTTGCTATCTTCAAGAAAAAATTTAATTGCAAATTTACTTTAGCGA
AAAAAATATATTATTTCAAGCTATGATTTCCGCTTACATTTTATAGAATG
GGAGACTTTCTTTTTAAAAATACGAGAAAAAAAAAACAGAAACCATTAAA
TCATATAATTGAAGAGTATAATTACCATCCCATCAGGATTTTCTGTTACG
GAATCATTCAAATATTAAATAATTTCCGGTAGAGTGGTTTTTCATTGTCT
AATAGATCGTCTTCCGGTCTGTAAATTTGATTCGGTCTGTAAAATTGATT
CGGGCTGTTTCTGACTCATTTAAAGTGATCGATTAAGATTTTAACAAAAT
CCTTTACTGCCGGATAGTTAATTTTAATTGATTTAAAATGCTTTCTTATG
ATCCCTACGGCGCTTATCCAATTTTAAAGAGCCCAAAGGTTTTAAATTAT
GAATGAAACAAAAATAATATGAAATCAAAACTCGAAAGTTGATACTAATA
AACTTTAAATACTATAAGACCAAAATTTATATACTGCGCTTCTAATATCC
GTTCTTCTTTGAGACTCTACTAATTCCTTATTATTAGAAAATTAGAAAAA
TTAAATTCTATATCTCACATTTTCTAGACTTCCCTTTGATTTACGACTCC
ATCCTTCGTGATCGAGCAACAATCGCCAAACTGGATAAGGAGAAGGCCCT
GAAATTCCGATTCGATGACTTCTTACAACATTGTACAGAGCTAGATTGGA
CGGAANAAGGAGAAGGCCCTGAAATTCCGATTCGATGACTTCTTACAACA
TTGTACAGAGCTGGATTGGACGGAGAAACTCCAACACTATTTTCACCGAA
ACAATTTCGATGAAAACGATATCCAATACCTTCGAACCATGAATATCTCT
TATCTAATGAACCAAATGCCAAGATTCAACTTGGACCAATTTTGGAATGC
ACCAATCAAGACATTAGTCTACCGAACCGCGTATTATTTTTCTCCAAATG
GTACTAAAGAGACTTTCGAGCTTTTACAGAAAATCTATTTCAAAAATGAT
ATTGATGTTGCCAAGAAAATTAACCAATTCCAAGCTCAATACCCAAATGC
CACTTATATTCAACGACAAGAGAAAACAGCAATCAATAAACGTATATTAG
AATTGATTGAAATTATCCAATTTGATGAAACTAAGGATCTACTCAAGCTC
TTCAACGTGACAAATCAGTTAAACTATCTCACCGGGCTAAGTTTCGATTA
TGTCAATAAGGTGACATCAAGATTGATTTACTACTCTATCCAACGTGATA
CCAAAATGAAGGAAGAATACACGACCAGAGTTAATGCAATCACCAGTAAG
ATTCAGCTCCTTCATTCAAGTGTTTATCACTGGGCTTTAACATGCTGGAC
AAGTATCAAGCCAGTAGACTTCAAAACAACAACTTTAGATTCAATCTCAG
AGCGATGTTTCAATTTACCCTTCTCCCAGACTGCTCATACCTTATATGGT
ATCAATAAAGAACGCGGACGATTCTTGGGTAAATTTGATATGTCATCTGC
AAGTATTATTGCTCAGTCGCCATTCCAAAATACAACTCTTCAACCTGCCA
GAAGCTTCATTGATAAGATGAATGGTGGTCTGCAGAAGATTGACAAATCT
AAGGAGTTACCGTATTACGAATACGCCAGATCTACTCATATCTCATGGAA
AGAAATTGAATCAAATCCTATTAGTGTTATTCTGGAAAGAATCCAAGGTT
TGCCATGGAGTGTCCTACAAAAAGCATACGGTGTCTCGGAAGCGTCTCTC
AATTCACTCCAGTTCATCCCATTTATCAGTTTAGAAGCTCTGGTAGTAAA
AGGTACCAAAAGTTCATTCCTGGTGGGTGTCAGACGTCTCCGGACCGTAT
CTGCTCAAACTATTTTCGCAGCAATGGAACAAAAAAGTAATGAAATAGCT
TTGAGAGCAGCCTACAAAGCTAATGTCTTGGCCTTAGCCGATAAACCATT
GTTATCACTGAAATACCTTTACCTCTTGAAACAAGACACGATGAAAGAGC
AAACTCTATTCAATGTCTGTAATGAAATGTTTGGCATACGTTTAGAAGAG
TTTCTACAATATTTCGGTATCGATTCTAAAGCATCAGATTTCTTCAAAGC
AACTATTCTCCGTGATTATGCATCTTTGCTTGGTCTTGAGTACTCCGGTA
TGGAACGATTCAGTATCAAACAAATTGTCAATCAGATCAAACCTGACTGG
ACATTTGCCGAAGCTATGTTGGTCTCGCCAACCGCATTTATTAAAGAAGG
TAGGTGCTTTATTCGTCATCCTTATCATTATTCTTAGTGGCCGTAGGCTA
AGGCGCACAAGGTTGGGGTTACCAAAGTTTCCAAAAATGGTACTCTACCT
CTCTGCTTGAGGCTCAGCAACTAAGGATCAAGCAGGGTAAGTGGAGAAAT
ACAGGGAAAAGAGTGGCACCCTCCCCATACCTTCGAGTAGACAGTTAGAG
AAAAGGAGCCTTCAGGTCGCCCTCCAATATTTACTTACTATCCTTCACTA
GTACAGCTTGGGTACATCATCACGCTTTTTCTTCCTCGTAACTATTTTCA
AGGGATGTATGTGTTTTCGTTAAAAGCGTTTTTCTATCAAATAGTTCTTT
AAGACAAGATGTACCCGGCAGAAGGCCTCGGAGAGTTTTCTATGGTACTT
TGAATAAAATTATGTCGCAAGATTTTGAGAAAGTTTTAGATAAAATCTGC
CTTCAATCAACGCAATCCAACTTTACTGAGAGAGTTGGACACGTTGCTAG
AATATTATTTTCGGAGGCCAAATATCCAGGCTGTTTATGTTTATCATTTA
AATTAAATATACTTATTTTTTTTATCAGGTGAAAGCACATTGGAAGAAAA
CCTTCGGTTTAGTATTCCACAAATTGTCGATACCTATCATAAACCAATCG
ATTCTGCACAAGCTTTTACCGCATACATTAAAGTTTGGTCAAAATCTGAT
GAAACTTCAAGAATTGTTAAAGAAGAAAGTTTGAAACAACTTGGTCAAAG
GTTGAAGATTGAAATCACAGTCTTAGCTGGCATGAAAATTATTGATATCA
TCAACACTGTGGTCATTTGTAAGTCTTTTAACGGCCACCAGTGATACTTA
AGAGAGGAATATAGGGCTCGGTTTTTGCCCGTAAGCCAGCTTATGTACTG
AATCTACGTAAGGCTTCGAATCCTCTTCTAGATAGAAAAAATCGATATTT
TATGTGAATAGCCTGCAGTAATCTAGGACTTTTAAAAATCTTTCGATCCG
CGACCAGCCAGCTGGGCTATCTATATTGAAAGGAACAGGGTTTCAAACCA
TAAAACCCGTGGTTTATAATTTTGACGCCTTGACCACTTGACCATCGCTC
CTTATCGGTTTCCCAGCCAGCACACGACGTTGTTTCAACGTTCATCTAAC
GTTATATGGACGTTGTGAACATTAGATAAACGTCGAAAAAACGTCGTGTG
ACAGTTGGGTTGGGCCAACTTACTAATCAGATTTTCATTCTTTCAAATAT
TAGCTTTCGGAGAGGAATGCGACATCAACAAAAAGAAATACTGTGCAGCT
TTACAGAAATGTGAACGAACACCAGTTGGTGATCGGTGCAAATGTGAAAA
TGGATACCGATTCAGTAAAGATAGAACATGTATTGGTAAGACTACATGTT
TTTTATTCTTTGTCACAATCAAGGTCATAATATTTGAGAAAAAAGGGAAA
TACACCGGGCAGTTTTTGAACCACAAGCGATTTGTAAGTGCTCTAAAGTA
GGTTGGAAGGGTAGAGTTTTAACTCTGAGTTTTAACGCCATACTTAAGAC
TTAGGTGGACCTTAGGATCTGAGGTTCCAAAAGTTCAAAAATAGTCCAAC
AAGGCTCAGAATATAGCCTGTAAGTCTGCCAACCCCTTCCGAATTGAAAT
ATTCGATTAAATTAAAGAGATAGCCCAAAATCNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNTAAATTAAAGAGATAGCCCAAAATCGAC
TTTCTCGCCGGAACTTTAAATCTTGAAAAACGTTAAAATAACCAAAATTA
TCAAAATATTATGACCTTTATTGCCATGGAAAGTCATGTGACATCTTTTT
TAACTAACCAATAAGATTTAATAATATCGAGGGTAAAACAAACACTATGA
TTTAACTCACTAAAAGATTATGTTTACTGAAAACACATAATTAATCTTTA
GTAAGTGTTCTGTTGTACCTTGTTGTTCTGTGACGTCATACCGTGGCGAA
GAATAAGCAAGTGAATACCCCTTTATCAGGCTCGTATTATGCTTAGCATT
CTATTGTTCTCAAACAATAGAGCTATTGTTTAGGTACTGAAAACTGAGCC
TTCATATGCTAGTCTACACAATACACAACTCCAGGCTTTTAGGCCTTCTC
GGGTAACTTAATGCATGTCCCAGAATTGCATTAATTTTTCCGCCCCAGTT
CCAGTCCCTAAACCATAACAAACTATACATTTTTGGAAGCATNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNAAATTTGAGTTTTTTTAAGAAAACATGATTATGACG
TCATTATTTATGACGTCATAATTTTTAAAAATTGAATATCTCAAGAACTA
ATACTCAAATCTTTATGAAATTTTGACCAATGATAGAACTCATCAAAAGG
AGGAGAATCTTTTTCAAAAAATTTGAAAATTTGCTGATGTCAGCATTTTA
TCGCAAAAATTCGAATTCTTGCAATTTTTGCTGACGTCATTAACTTTGGG
AAATACTTTTAAAAGTTTTTGAAACATCTCAATGTACTTTATCACTGGTC
CAAATTTCATAAAGCTTTGATTTATATTTCTCGAGATATTCAACTTTTTG
TATTTATGACGTCATCGATCATGACGTCATAATCAGGTTTTTTTAACATA
TCTCTAATAATACTGAGAAAGAATTTAAGTTACACCGAATACGGTATTCT
ACATCCAAATACGCTTCCAAAAATGTATAGTTTGTTATGGTTTAGGGACT
GGAACTGGGGCGGAAAAATTAATGCAATTCTGGGACATGCATTAAGTTAC
CCGAGTTACGAGTTTTACGCTCGAAACGAAGGAAGATATGACGTAGCCTA
GCATATGCTTATAAACGTTATACTTATAAAAGAAAAAAACATGTATTCAT
TTCAAATATTCTGATGTTCACGATTTACTGACAATGACCAAAACCAAAAA
TCAGTTAGACACGATGAAATTTTTTTACAGCTGGTACAGAGAGTAAGGAG
ATTAAGGAATTCTTTTACCGAAGAAAATATGAGGGACATGTTATCTCTGT
TCATTCAAGGAGCATTTCCATTTAAACTAGTAGCAACAATTTCAAATAGT
GAAAAAATTTTTATTGAGATCTGGTACGGCGGTACCTGCCGTAATCGATA
CGCCATGCCTGCTGAACCTTGAATATAAGAAGGGTTTAGTTAACATCAGA
GACATAGGTATGTCTAAAATATCGTCTTCTGCACAAACAGACCTTGGTGA
ATGTTTATTCACGAATGTGACCTGCCTTAATTCACCAAGGTCATAGTCCC
CGACTAGCGACTACCTCACCTCCACTTCGATAATTTTCGAAAAATAGAAG
CCTTTTAGGTGTATTGACGCAAATTCGATTTTTTGCTACTGCAGGAGATT
CGAAAATTTAAAGTGACGTCAAAAATCGTATGTTTGGAGCCCGAAAACCT
GGACTCCAAACATTCGAAAAAGTTGTAAAGTGGAATAGACTGCATATAAA
AAAGCCGTGACGTCTAGTATAAGCTAAGTCCCCGACATAATTTCCGAATT
CGTTTAAAACAATGAAATTGTTTATTTTCTTCGCCTTTACAGATCTCGAT
GAATGTTTATTCACAAATGTGACGTGCCATAAGAACGCTGAGTGTATCAA
CACCAAAGGTTCATTCGAATGTGCTTGCAGAACTGGATTCACCGGAGATG
GCTATAGTTGTACCAATATCAACGAATGTGAAAAAGGCACGCATAATTGT
CACGAACACGCTACGTGTATTGATACGGAAGGAGCATTCACGTGTACTTG
TAAATTAGGATATGAGGGGAATGGGCGCGAATGTAAAGATGTGGATGAAT
GCATTACTGGTCTTCATAATTGTCATCGACATGCTGAATGCAGTAATGTG
GAAGGTAGGTTTCGGACAAAGATTTGTTATTCAAGTTTGAGGCTTGGAAC
AGAGCATAGAATTCTATGAACAGAGTAAAAGTAGAGAAAAACAAAAGATG
TCCCTGTCTCTGACACTCATAGGGACTGTCTCAAGAAAAAGTATCTATTT
CGTACGGAATCTATTACGTGAGTTTTTCCCGGGCTAGCGCCCAAATCTCA
AGGCTAACTCTGTCCCGTGAAATCTGACCTGTACGTCGTAGCTTGGGGAG
TGGATCTATTGCGCGAAATTCTTCAATCTCACGTAATAGAAATCGATTAG
GATATAAGCGTGATCCGAGGGAAATTTACCTTACGGAGATTGGACTGAAT
CATTTAGGATAAAAAATCACCCGAAAAACATGTAAACAGAAAAGAAACTT
TGGTATTTTTTTTTGGCTTCTGACAAGTTTTTAGCCTGGATATCCAGGCT
GTAAACTATTTCATAGTCAAGTTTTTGATATTTTATGTGCTGGTTCAACC
GATAGAACCGGAGGTCAAGTTTTCAACTTCTGGTCGAGTCGAGATTTGAT
GAAAACCGGCCCTTAGAAAGAGGCTGTTAAATCCTAAATACCCACAAGAA
TGTCCAACCTCGTCTCCGTGTATTCCAGGCTTTATTTACGTTACTGATAG
ACGCCAGAGAATTTTCTGGTGCGGTCAGTAAAACATAAAAAAGCTGATGA
TACACAAGGAAAGAGGTTGGGACATGTCTACTTCAATTCAACATCAATAG
ACCTTTTCATAAATTACGTCACAGGCATCACTTGCCTCGTATTCAAACAA
TTACCAAGGTGATTATGTCCCTTGAGAGATTAAAAGATTTTTTTATGAAT
AGAAAGCAGTTTTAATAAAATCCGCTGGGATTTAAGTAATCACTATAGCA
ATAATTTCAAAACGAGGCAAGTGATGTTCATGGTCTATTTGTCTTTTATT
TTCAGGCTCGTTCAATTGTGAATGTAAGAAAGGATTTGCAGGAGAAGGTG
GTCGCTTTTGTTTGGATGTTGATGAGTGTGAACGAAATGAAGATAATTGT
CCTGCGCAATCACAATGTGTTAATACGTTAGGTATGTTACAATATGTAGT
CCAGCATATGCTTGTAGTTTGTACGAACTGATATTATCCCATTACAATTA
TCATATTATCATATAACACCCATATTACTGTATTACACGGATAATAAACT
ACTCAAGTCTACAATACGGCTATCAACCTTTAAGTTAACAGTTTGATAAC
GCCGTTCGAGTTTACCAGAGATAATACGTCAAATAATGGAAGTCTCTTCA
TTGGCTAACTCAGATATCTTGCGGTAACATTAAACCCTGATGAACTTGAA
GCCAGAACCTCTTGTTGCGGGTCAAAGTGGAAATTATTTGAAAAATAACT
GATTCAAGTAGATATCATTTGTAAATTTTTGAAAATAACTAATAATTCTA
AAATCCAATGACAATATCATTTTCAGGTAGTTTCAAATGCAATTGCATCT
CACCAAGCGTGTTGACGGATGATGGGAAAACATGTGGACAATGTCGACAA
AATAATCTACGAAATTGCCATTTGGATGCTATTTGTCTGGCAGGTTATTG
TGTTTGTAATGATGGATATAGAGGGAATGGAAAGACATGTGAAGATATCA
ACGAATGCATTGAAACACCAAATGTTTGTGGAAGAGGAAGATGCAGTAAC
ACAAAAGGTGAGTCCAAGGAGCACTTCCATTTAAACTAGTAGCAACATTT
GCAAATAGTGAATAATTCTTTATTATTGACACTGTAAACCTATCCAATGG
CTTATATTTAAAGCAATCATACACCTAGTACAAAGAAATCCTCGGCCTTA
AATTCAGAACTTTGTCTAAGCTTAGCTAGCTTTCTTCGGTCTTGCAAAGC
AAATAAAGACCCTTGACTTGATACAGAATCAAACGCATATATAGCCTGTT
TAGAAAAATCAATGCGGTTCCCCCACATCTTACCACGAACTATTTTTTTA
AAAGAACTTAGGCAAAAACTAATCTTGGCGAATTTGGTGAGTTTAGTGTA
TTAAATTCGACACCGGATTTATCAAAAATTCATCAAAATCCAGTTTTAGA
GGACAGGTCCATTTAAAACGAATCGAATATTTTTCGTTTATAGGTAATTT
CGATTGCACATGCGTAAACGGTTACCGATCGACACCGACAGTTAAGAAAT
GTATTGATATCGATGAATGTAGTGAACCGCGTGGTCATTTGTTATGTAAC
GGAACAAGTGAAGTGTGCACTAACACTGATGGTGGTTACGCATGCGTCAG
TAAGTATTTAACTAATTCATATTGTATACTTCTATCAACCTTCAAGGAGC
GATGGACAAGTAGTCGAAGGTGTCAGAGTCTCAAACCAGGGATTCGCGGT
TCGAATCCCCGCTCCTTCCAATGTTCCGTTCAGTTCATATATAGCCGAGC
CGGCTGGCCGTGGACCCCGTGAAAACAATCGAAATACTGTCTAAAAGTCC
TAGATTACTGAGCTATCCACGTAAAATATCGACTCTACCTATCTATTCAC
AGCGCAAGGAGCAAGGAAACTGGTTCCAGTTTAGCAGGCAAAAATAATGT
CAAATATCTAAAGTTGTTGCATTTAGATCCTCATAGAATTTTGACGTCAT
TTCCTTGTAAATTCATCACCAGTCCCCTCAAAAGCTGATCACTTTTGTTA
TTTTGGTTGACATGTGTTATTATCGTATTAGCTTATTATCAAAACCCACT
AAGTATCCTTTTTACCTGGTTAGCCTCTTTTATACATAACCATGTCCTTG
CTTTCCCCTCCATCATATTAGAGTTATTTGGTGTGCATTTGATCACACTA
CTGAGTTTATGTATGAGGACGGTGGTGTGATTGAAATGGTTGGAACAACC
CGCAGTACCGTCGTCCTCAGTCAATCGGGATCTAAACAAAGCAAAAGTCA
ACCGCGTCATCGTCGCAGAAAAACACACATATACATAAACTCGGCACTAC
TGCAAAAAGTCATAGTCGATGATCTTATTACGAAAGTTTTATAATTCCCT
GATAAAGTAAGTTAGGAAACTGGTCTCAGTTTGTTGATAAGACTTTGGAG
GATTAATCATTCCTAGAGCCATGTTTGAATCTGAGATTAACAAAGAATGA
CTTTCCTTTTTTCTTCAGCTGTCAAATCAGACAAAGCAGTCAAGATCGCC
CTGGGAACGGCTATTCCACTTATTGTTATCATGTTCATTGGTTTGTTTAT
CTTCTGGTGGATGCATCGTAAGAACCAAGGGAAAAAAGAATTGGACGATT
TCGATAAGAAATTACGACAAATGTACGTCAATGATGCTTTCACACGTGAC
GATGAAAGTCAAGTCAGTGATCGATCATCACGACCAATTGCACCTAGAAA
TCAACGGATGAGCGTCAATAACTTTTTAGGTGCCAGTAAAACTTTTATGA
ATCTTTTTAAATCTGATGAACCAGAGGAGATGAAGAAAACTGAATATTAA
ATGAAACAACAAATTGAATAAACAATGGTTACAAGAATCTATAAAGTTAC
ATATCGCTGTTGGAGTTAGAGTGATACGATCACAAGAACATCCCAGAAAA
TTAGAGTTACTCGGGATAACTCAACCCTTTTAATTAGTGTTATTCAAAGG
CTCAAACGTACACCTGAAGCAATAACGAATGACAAAATCCTACAAAACTT
ATGATTTTTATAAAATTTTACTTGTATCATACAGAATTATCTTATGCTTT
CTCTATATTACTGTGGAAATAGCCATTCTACTACCACCTTATAGTCCATT
CCTGTTGGACTATTACACCTTGATATTTTAAGGTCTAAGAGTACCTTAAC
TAAACCACAAAAATTTCTTGAAAGGTTACAAAAATTAAGTAAAGCCCTGA
GAGGATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_017255XLOC_017255Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00030156-exon-sc0000796-1575043694:124710..125003TCONS_00030156-exon-sc0000796-1575043694:124710..125003Clytia hemisphaericaexon
TCONS_00030156-exon-sc0000796-1575043694:123656..123753TCONS_00030156-exon-sc0000796-1575043694:123656..123753Clytia hemisphaericaexon
TCONS_00030156-exon-sc0000796-1575043694:122575..122676TCONS_00030156-exon-sc0000796-1575043694:122575..122676Clytia hemisphaericaexon
TCONS_00030156-exon-sc0000796-1575043694:121005..122504TCONS_00030156-exon-sc0000796-1575043694:121005..122504Clytia hemisphaericaexon
TCONS_00030156-exon-sc0000796-1575043694:120186..120425TCONS_00030156-exon-sc0000796-1575043694:120186..120425Clytia hemisphaericaexon
TCONS_00030156-exon-sc0000796-1575043694:119619..119750TCONS_00030156-exon-sc0000796-1575043694:119619..119750Clytia hemisphaericaexon
TCONS_00030156-exon-sc0000796-1575043694:116900..117211TCONS_00030156-exon-sc0000796-1575043694:116900..117211Clytia hemisphaericaexon
TCONS_00030156-exon-sc0000796-1575043694:115823..115948TCONS_00030156-exon-sc0000796-1575043694:115823..115948Clytia hemisphaericaexon
TCONS_00030156-exon-sc0000796-1575043694:115197..115427TCONS_00030156-exon-sc0000796-1575043694:115197..115427Clytia hemisphaericaexon
TCONS_00030156-exon-sc0000796-1575043694:114605..114760TCONS_00030156-exon-sc0000796-1575043694:114605..114760Clytia hemisphaericaexon
TCONS_00030156-exon-sc0000796-1575043694:112997..113735TCONS_00030156-exon-sc0000796-1575043694:112997..113735Clytia hemisphaericaexon
TCONS_00030156-exon-sc0000796-1510915933:124710..125003TCONS_00030156-exon-sc0000796-1510915933:124710..125003Clytia hemisphaericaexon
TCONS_00030156-exon-sc0000796-1510915933:123656..123753TCONS_00030156-exon-sc0000796-1510915933:123656..123753Clytia hemisphaericaexon
TCONS_00030156-exon-sc0000796-1510915933:122575..122676TCONS_00030156-exon-sc0000796-1510915933:122575..122676Clytia hemisphaericaexon
TCONS_00030156-exon-sc0000796-1510915933:121005..122504TCONS_00030156-exon-sc0000796-1510915933:121005..122504Clytia hemisphaericaexon
TCONS_00030156-exon-sc0000796-1510915933:120186..120425TCONS_00030156-exon-sc0000796-1510915933:120186..120425Clytia hemisphaericaexon
TCONS_00030156-exon-sc0000796-1510915933:119619..119750TCONS_00030156-exon-sc0000796-1510915933:119619..119750Clytia hemisphaericaexon
TCONS_00030156-exon-sc0000796-1510915933:116900..117211TCONS_00030156-exon-sc0000796-1510915933:116900..117211Clytia hemisphaericaexon
TCONS_00030156-exon-sc0000796-1510915933:115823..115948TCONS_00030156-exon-sc0000796-1510915933:115823..115948Clytia hemisphaericaexon
TCONS_00030156-exon-sc0000796-1510915933:115197..115427TCONS_00030156-exon-sc0000796-1510915933:115197..115427Clytia hemisphaericaexon
TCONS_00030156-exon-sc0000796-1510915933:114605..114760TCONS_00030156-exon-sc0000796-1510915933:114605..114760Clytia hemisphaericaexon
TCONS_00030156-exon-sc0000796-1510915933:112997..113735TCONS_00030156-exon-sc0000796-1510915933:112997..113735Clytia hemisphaericaexon
TCONS_00030156-exon-sc0000796-1491911889:124710..125003TCONS_00030156-exon-sc0000796-1491911889:124710..125003Clytia hemisphaericaexon
TCONS_00030156-exon-sc0000796-1491911889:123656..123753TCONS_00030156-exon-sc0000796-1491911889:123656..123753Clytia hemisphaericaexon
TCONS_00030156-exon-sc0000796-1491911889:122575..122676TCONS_00030156-exon-sc0000796-1491911889:122575..122676Clytia hemisphaericaexon
TCONS_00030156-exon-sc0000796-1491911889:121005..122504TCONS_00030156-exon-sc0000796-1491911889:121005..122504Clytia hemisphaericaexon
TCONS_00030156-exon-sc0000796-1491911889:120186..120425TCONS_00030156-exon-sc0000796-1491911889:120186..120425Clytia hemisphaericaexon
TCONS_00030156-exon-sc0000796-1491911889:119619..119750TCONS_00030156-exon-sc0000796-1491911889:119619..119750Clytia hemisphaericaexon
TCONS_00030156-exon-sc0000796-1491911889:116900..117211TCONS_00030156-exon-sc0000796-1491911889:116900..117211Clytia hemisphaericaexon
TCONS_00030156-exon-sc0000796-1491911889:115823..115948TCONS_00030156-exon-sc0000796-1491911889:115823..115948Clytia hemisphaericaexon
TCONS_00030156-exon-sc0000796-1491911889:115197..115427TCONS_00030156-exon-sc0000796-1491911889:115197..115427Clytia hemisphaericaexon
TCONS_00030156-exon-sc0000796-1491911889:114605..114760TCONS_00030156-exon-sc0000796-1491911889:114605..114760Clytia hemisphaericaexon
TCONS_00030156-exon-sc0000796-1491911889:112997..113735TCONS_00030156-exon-sc0000796-1491911889:112997..113735Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000796supercontigsc0000796:112997..125003 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0953446	0.0836784	0.0462252	0.0452242	1.92865	1.12508	6.1871	9.68076	23.4041	25.3945	9.42711	26.0455	11.1096	7.22785	35.1229	26.7954	8.5082	7.94694	1.0186	0.800746	0.290382	0.236063	0.530203	0.487001	0.0109583	0.0502482	0.237917	0.209288	1.97364	1.38388
Blast
[Close]
BLAST of TCONS_00030156 vs. Swiss-Prot (Human)
Match: HMCN2 (Hemicentin-2 OS=Homo sapiens GN=HMCN2 PE=2 SV=3)

HSP 1 Score: 178.333 bits (451), Expect = 9.440e-45
Identity = 117/359 (32.59%), Postives = 163/359 (45.40%), Query Frame = 2 
Query: 2234 SFGEECDINKKKYCAALQKCERTPVGDRCKCENGYRF-SKDRTCIDLDECLFTNVTCHKNAECINTKGSFECACRTGFT--GDGYSCTNINECEKGTHNCHEHATCIDTEGAFTC--TCKLGYE-GNGRECKDVDECITGLHNCHRHAECSNVEGSFNCECKKGFAGEGGRF-CLDVDECERNEDNCPAQSQCVNTLGSFKCNCISPSVLTDDGKTCGQCRQN--------------------------------NLRNCHLDAICLAGYCVCNDGY-RGNGKTCEDINECIETPNVCGRGRCSNTKGNFDCTCVNGYRSTPTVKKCIDIDECSEPRGHLLCNGTSEVCTNTDGGYACV 3190
            +F  E +  + +   ALQ  E   VG    C  G+   S+   C+D DEC      C  +  C+N  G F C C TGF    D  +C +++EC    H C E   C++  G++ C   C  G+   +G  C+DVDEC+ GL +CH +  C N  G   C C +G+  +G    CLDV+EC +    C    QC N  GS++C C     L  DGK C    +N                                +LR   + A+   G   C  G+ R NG  C D++EC    N+C    C NT+G++ C C  GYR  P+ K C DI+EC E    + C G  ++C NT G Y CV
Sbjct: 4588 AFDPEAEALRFQLATALQ-AEENEVG----CPEGFELDSQGAFCVDRDECSGGPSPC--SHACLNAPGRFSCTCPTGFALAWDDRNCRDVDECAWDAHLCREGQRCVNLLGSYRCLPDCGPGFRVADGAGCEDVDECLEGLDDCHYNQLCENTPGGHRCSCPRGYRMQGPSLPCLDVNECLQLPKAC--AYQCHNLQGSYRCLCPPGQTLLRDGKACTSLERNGQNVTTVSHRGPLLPWLRPWASIPGTSYHAWVSLRPGPM-ALSSVGRAWCPPGFIRQNG-VCTDLDEC-RVRNLCQHA-CRNTEGSYQCLCPAGYRLLPSGKNCQDINECEEES--IEC-GPGQMCFNTRGSYQCV 4930
The following BLAST results are available for this feature:
BLAST of TCONS_00030156 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
HMCN29.440e-4532.59Hemicentin-2 OS=Homo sapiens GN=HMCN2 PE=2 SV=3[more]
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