TCONS_00030153 (transcript) - C. hemisphaerica

Overview
NameTCONS_00030153
Unique NameTCONS_00030153
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1137

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00030153 ID=TCONS_00030153|Name=TCONS_00030153|organism=Clytia hemisphaerica|type=transcript|length=1137bp
ATTGATTGATGACAtcgcattttgtaattttctggAGTTTTGAAATGAAG
CCGTAGCAGTAACGACTGCAATATGAGTGATTCTAcgacaaacatcaata
acaataacaacaacaacaacaacaacaacacagGACCAACAGCTCCAACA
AATTGCGACGACCTTATCAACAACAATAATCCAGAATATCCTAACTCACA
AACAGCAACACCAACTTTCCATTTCGATCATAATACCATGGATCTTGGGG
CGCCACCACCTTATGCTCCACCCTACGCCACAGCTCCACCTTACTATCCA
ACGACTATCACTATGAGTCCAGAGCAGCGTCGCCTTGTCAACACCCATAA
CAACAATGATGAGGAAAAAGAAGATTTGGATTTCTTCAAATATACCATCC
CCTGCAAACGCATCGCAGGATATATCTCAGTGTGTGTGGCCGTGGTAGTA
ATCGTGGTCATACTGTTACTATTGATCTTTGGAAAGATGTAAGGAGAATA
GAGAGAGAAAAAAGGAAGGCGTAGTTCTGCTCAACAACGTTGTAACGATG
ACTCGACAATACCTTTGAATGCTGAAACGAATGTCTGTTGCTTGGTTACT
AAGATTGATATGAACGGCAACCCCGTACTTGTCTGTAGGAATATACAATG
TACCAATATCTTACATACTAAAGACAATATTCAGTATTATGACCAACCTT
TATCAGCAGCTATACCACCACCTGAGTATCAAAGTGGACCGCCCTCCCCG
AACACCCATCCCGCCCTTAATAATAATTCCCGCCCACCTTTAACGCaaat
gaataatttgaaaaatttgtctNTAATAATTCCCGCCCACCTTTAACGCa
aatgaataatttgaaaaatgtgtcaacAACGGCACACCAACTAACCGAAG
AACATGTGGACCATTTTGGGAAACTTTACGGGTGTAAAACAATGACCAAT
ATAATTGTCATGGTATTAGCAGTAGTTTTCTTCGCaatatttttaacatt
attagttTTACTGGCCTAGCTTTTATTTCCTATCTAAGTTTTCCATATGA
GTTCAGAACATGAATAATTACTTTTTCATTTAAACTTTCAGCAATTGAAG
TCTGAGCGACCTTCGCTTAATTCGAACTATAAGTatc
Run BLAST on NCBI

protein sequence of TCONS_00030153-protein

>TCONS_00030153-protein ID=TCONS_00030153-protein|Name=TCONS_00030153-protein|organism=Clytia hemisphaerica|type=polypeptide|length=139bp
MSDSTTNINNNNNNNNNNNTGPTAPTNCDDLINNNNPEYPNSQTATPTFH
FDHNTMDLGAPPPYAPPYATAPPYYPTTITMSPEQRRLVNTHNNNDEEKE
DLDFFKYTIPCKRIAGYISVCVAVVVIVVILLLLIFGKM
Run BLAST on NCBI

transcript from alignment at sc0000796:100081..104953-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00030153 ID=TCONS_00030153|Name=TCONS_00030153|organism=Clytia hemisphaerica|type=transcript|length=4873bp|location=Sequence derived from alignment at sc0000796:100081..104953- (Clytia hemisphaerica)
ATTGATTGATGACATCGCATTTTGTAATTTTCTGGAGTTTTGAAATGAAG
CCGGTAAGTAAAAGTGTTTTGAAAACTCAGAAGGGCCACCGTGAAACTTT
TTGTAAAGTCTGTCTCAATGAGCTGTTCCGGAAAATTTGCGAAAAAATCC
TTGGCAAAATTCTTTTCATGCTTGAGATGCTTGTTGTTTACCACCCCCCC
TCCCTGGAAATCTAAGAATAACTTTTTACTCTCTGGAAAAAATAATAAAT
ACTCCTTTAGACCCTCCTGGAAATTCTTCTCGTATCACCCCCTAGGAATG
TTCGTCCTTAAAATGGATTGGCCCAATATAATCTGCAGCGGTGACCAGAT
ACACAAATTGACTTTTTAAACAGCGACATAAAATTTTCTTGCAAGCAGCA
TTTCTTACAAAATTTTATGTATTTTGTCCATCCAAAATTACAGTAAGTTC
TCGCTTATTCGAACTTCTATTATTCGAATCTCTCAATAATTCGAACTTTT
TTCCAGTCCCTATCAGGGAGAAACCTCTTAAAATACTTTCTATAACTCGA
GCAAATAAGAATCACCATTTGAGTTCGAATTAGCAAGAGTCAACCTGTAA
CTGGGATCGAAGTTTTAGGTCCGAAGGACAAAAATGCAACGAATTTCGTT
TCAGACCCACCCCAGCTGACACATAACGTTGTTTCAACGTTCATGTAACT
CTATATGGAAGTTAGATGAACGTTTTAAGCAAGCTGGGCCGTCTCCTTAC
CAGCAAAGTTTTAGAGGTTTTAGAGGTTCTTACATTGATATCGGGCTTGG
GAATTCAAAAAAAAACAAAAAAAACAGTAAAATTTGTAAGAAAGAAGGAG
AAATATATTTGGGGAGAATTCGAAATTTTGGTAAAATTCACAACCACTTT
TGCAAATAATTTGAGAGGTCTTTTTTTAAGCTTCAATATGGCACATCCTA
TAATGCTTTTGCGTATATGATATTATGAGACCTATCTATTATCAAGTTTC
TTCAGTCGGTTCAGTCCTCAAATTCCTTAAGGAAAGGATAGAGAAAACCT
TTGTTCGATGTAACCTATGATGTTATTTATTTGCAACTATGGCACAAGAT
ATTTCGATAATTCTAAGAGAAATTTGTAACATGGGCATTTATTAAAACCC
CACTGAAACTACAAGTGACACAAACACCCCCTTCTCACAGACCCGTTAGG
ATTTTTCCAGCCGGTGAGGGTAAAAATAACGGACCAAAACTCGACGGCGA
TTGATATTCCAATGTTGTTTTCTGGGTGAGAGATTTGAATTCCATTGTTT
TCGAACCAGAGTTAGTGCGGATAGAAAAAATAGCACAATATTTTGCAGTG
AGGATTTACTTATCTGAATATTTTCAGTGGGGACAAAAATCAGGGTATGA
TTTTCTACTGGGGACGATATTCCGGCTAATTTTTCCAGTGGGAACGGGTC
CCAGTGGGTCTGTGAGAAGGGAGTGTACACAAGGACTAAATTATTTTCCC
TTTGAGATCAAGAAGATCCCAACTGAAATATTTTTTCATTGGAGTCAGTA
AGACTAGACAGACCGATATTAAAGATTGTCCTAGTTGGAAACAACTGGGT
ACTAAGGCTAAAGATAAAAACAAAACTGTTTCTTTTATCAGAGATTGTGA
AGAATTGAAACATCTGCTATTTCGAAAAAAAAATTCTTATTTTGTGGTTT
CTGACTTATCAAGAAAAAACTGAAGGGTCCAACCAAATCAGAGATTGGAA
AAAAAAAAGTTGTTATGATGAGATCAGTTTTGGTTTTTATCGAGGAAAAT
GAGGGAGAGAAAATAAGAATGAATAATGAAGAAGAAAACACAAAGGAAAG
ATAATATGCATAACTCAAAACAAAGGGGAAAATAATTTTGTACCATATCT
TCGATGATGAGGAAAAATATTCAAGAAAAAAATACACAAAAGAGAAAACT
AAAATCAACAACTAAACTATATGGAAAATGTATTTTTTGTGTTTCGTATG
TTTGATTAGATGACAGAAGGAGTTTGGAATCGAATGAAAATAAAGCACAA
AAAAAAAATTAAAAAAAGGGAGAGAAACGCCAGGGAGAAAATTGATTAGT
TCTAATTATTAAAACGACTTTTTCATATATTGGTACAAAAAAGAAAAAGA
AGATTGAAAATATATGACGAATAATTTTTTGATGATATCTATGATCAAAA
CAGGAAAAATATTGTAAAATATTGTTGTCAAAACCCAGAAGGGAACCGTA
CAAGATCAAATATAAAAGCTTTTGAACATTTTGTATACAGACATATATTG
ACTTTAAAGGACGTTTTTGGACCAAAAGATTTATGAAAATTCAAAACATT
TGAAGCAATAAAAAACTTGGTCAAGGAGGCTCTTGTGTGTTGACGTCATT
TTTAATGAGAGACATGCCGATTGTTTTGTTGTGAATCATGATGTTAAGGA
AATGAAATTTCAATTCAACTTCATGTACTGAAACTCCGAACACGTAAGAT
TAGATGTTTTTATAGGGGTGTGAAAACGTGTAAAAAACGTTTACCACAAA
CATTGCTGTGTACAATCTAAAGTAATGAATGTGGTATCACTTTTACACGG
TTTCACTGGTTGAGAAAATTAAAAATCCTCTTTTCAATGGTTGGTGAATA
AAGCTCCCTTTCATGCATTTTTTGAATGAATTTTGGTGGGAGAGCCCTAA
AAATCAAATCCAAATATATCTTTGCTATAACACACACCGCATTTTATCAT
TCTGACCATGATCCGGCTACTAAAGTCTGCCATATTGATTAAGAGGATTT
TTAATTTTTAACTGAGGGTCATTATTCCTCCTCATTTTATCCTTCATAAA
GCTTATTTTGACATAAAAAAGTACTTTCATAGTAATTAAAACACTATCAG
AATTTCATAATCTAATTCCAATAGGATTGCTAAAGCAAAGAAAGCAAGCA
ATCTTAAAAACATTTTCAGCAAAAAAAATCCAAAATAGATTGGCTTAAAT
GTTAATATGGATCAGATTTAAACAAAAAGAAACAATTCTAGCCAATGAAA
GCGTANCCTCTTTAGTAATTAAAACACTATCAGAATTTCATAATCTAATT
CCAATAGGATTGCTAAAGCAAAGTAAAAGCAAGCAATCTTAAAAACATTT
TCAGCAAAGAAATTCCAAAATAGATTGGCTTAAATGTTAATATGTATCAG
ATTTAAACAAAAAGAAACAATTCTAGCCAATCAAAACGTTTAAAATCCAA
AATTTAACCAATCGGATTGAATATTTTAAATACGTCAAAAAGAATAATCT
TAAAAAGGCAAAAAAATGAACGAGGAATAATGGGCCTGGGGATAGTTAAT
GCTATCCTTTATGTTACCAGTTCAGCTTATATCATTATTGTTTTTCTTTG
ATCTCTCTATGAACCTTGCAGTAGCAGTAACGACTGCAATATGAGTGATT
CTACGACAAACATCAATAACAATAACAACAACAACAACAACAACAACACA
GGACCAACAGCTCCAACAAATTGCGACGACCTTATCAACAACAATAATCC
AGAATATCCTAACTCACAAACAGCAACACCAACTTTCCATTTCGATCATA
ATACCATGGATCTTGGGGCGCCACCACCTTATGCTCCACCCTACGCCACA
GCTCCACCTTACTATCCAACGACTATCACTATGAGTCCAGAGCAGCGTCG
CCTTGTCAACACCCATAACAACAATGATGAGGAAAAAGAAGATTTGGATT
TCTTCAAATATACCATCCCCTGCAAACGCATCGCAGGATATATCTCAGTG
TGTGTGGCCGTGGTAGTAATCGTGGTCATACTGTTACTATTGATCTTTGG
AAAGATGTAAGGAGAATAGAGAGAGAAAAAAGGAAGTGAGTCTTGATTTT
TTAGCTTCCAATTCCACTGATTTATTAGAATTGGATTTTTTGATTCTCTC
TTTCTTAGATAGTTAAGCCGTCGGAATCTGAAGGGAAATCGATTTTGAGA
ATTGTGACGTGAATTATAGAAGATTCTACCAGAAAGATGCCGTTTGGGAA
TGGTTTTTTAGATGATAGACCTTTCAGACCCAACCGTCTACTTGATTTTG
ATGATAACCCTAGTTTAATGGGAATTGGTGGCCACAGAGGCCGTGGAGGG
CGGGGAGGGGCACGAGGCCATATGAGAGGACGTCAAGGGCGATTTCAACA
CGATCGCCATTACATGGCTCATAATAACAGGCGGGTTGCTACGAACATTT
TAGGGCGTAGTTCTGCTCAACAACGTTGTAACGATGACTCGACAATACCT
TTGAATGCTGAAACGAATGTCTGTTGCTTGGTTACTAAGATTGATATGAA
CGGCAACCCCGTACTTGTCTGTAGGAATATACAATGTACCAATATCTTAC
ATACTAAAGACAATATTCAGTATTATGACCAACCTTTATCAGCAGCTATA
CCACCACCTGAGTATCAAAGTGGACCGCCCTCCCCGAACACCCATCCCGC
CCTTAATAATAATTCCCGCCCACCTTTAACGCAAATGAATAATTTGAAAA
ATTTGTCTNTAATAATTCCCGCCCACCTTTAACGCAAATGAATAATTTGA
AAAATGTGTCAACAACGGCACACCAACTAACCGAAGAACATGTGGACCAT
TTTGGGAAACTTTACGGGTGTAAAACAATGACCAATATAATTGTCATGGT
ATTAGCAGTAGTTTTCTTCGCAATATTTTTAACATTATTAGTTTTACTGG
CCTAGCTTTTATTTCCTATCTAAGTTTTCCATATGAGTTCAGAACATGAA
TAATTACTTTTTCATTTAAACTTTCAGCAATTGAAGTCTGAGCGACCTTC
GCTTAATTCGAACTATAAGTATC

Coding sequence (CDS) from alignment at sc0000796:100081..104953-

>TCONS_00030153 ID=TCONS_00030153|Name=TCONS_00030153|organism=Clytia hemisphaerica|type=CDS|length=420bp|location=Sequence derived from alignment at sc0000796:100081..104953- (Clytia hemisphaerica)
ATGAGTGATTCTACGACAAACATCAATAACAATAACAACAACAACAACAA
CAACAACACAGGACCAACAGCTCCAACAAATTGCGACGACCTTATCAACA
ACAATAATCCAGAATATCCTAACTCACAAACAGCAACACCAACTTTCCAT
TTCGATCATAATACCATGGATCTTGGGGCGCCACCACCTTATGCTCCACC
CTACGCCACAGCTCCACCTTACTATCCAACGACTATCACTATGAGTCCAG
AGCAGCGTCGCCTTGTCAACACCCATAACAACAATGATGAGGAAAAAGAA
GATTTGGATTTCTTCAAATATACCATCCCCTGCAAACGCATCGCAGGATA
TATCTCAGTGTGTGTGGCCGTGGTAGTAATCGTGGTCATACTGTTACTAT
TGATCTTTGGAAAGATGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_017254XLOC_017254Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00030153-exon-sc0000796-1575043694:104901..104953TCONS_00030153-exon-sc0000796-1575043694:104901..104953Clytia hemisphaericaexon
TCONS_00030153-exon-sc0000796-1575043694:101069..101532TCONS_00030153-exon-sc0000796-1575043694:101069..101532Clytia hemisphaericaexon
TCONS_00030153-exon-sc0000796-1575043694:100081..100700TCONS_00030153-exon-sc0000796-1575043694:100081..100700Clytia hemisphaericaexon
TCONS_00030153-exon-sc0000796-1510915933:104901..104953TCONS_00030153-exon-sc0000796-1510915933:104901..104953Clytia hemisphaericaexon
TCONS_00030153-exon-sc0000796-1510915933:101069..101532TCONS_00030153-exon-sc0000796-1510915933:101069..101532Clytia hemisphaericaexon
TCONS_00030153-exon-sc0000796-1510915933:100081..100700TCONS_00030153-exon-sc0000796-1510915933:100081..100700Clytia hemisphaericaexon
TCONS_00030153-exon-sc0000796-1491911889:104901..104953TCONS_00030153-exon-sc0000796-1491911889:104901..104953Clytia hemisphaericaexon
TCONS_00030153-exon-sc0000796-1491911889:101069..101532TCONS_00030153-exon-sc0000796-1491911889:101069..101532Clytia hemisphaericaexon
TCONS_00030153-exon-sc0000796-1491911889:100081..100700TCONS_00030153-exon-sc0000796-1491911889:100081..100700Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00030153-proteinTCONS_00030153-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000796supercontigsc0000796:100081..104953 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.00811619	0	0	0	0.715599	2.66896	8.43975	4.41147	1.75689	1.92989	5.67344	8.20438	2.5603	2.4771	3.85885	5.33882	8.74004	7.97554	4.42029	6.4825	1.63488	2.50254	3.19696e-06	0	1.87392	2.44374	0	0.310731
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00030153 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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