TCONS_00030152 (transcript) - C. hemisphaerica

Overview
NameTCONS_00030152
Unique NameTCONS_00030152
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1191

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00030152 ID=TCONS_00030152|Name=TCONS_00030152|organism=Clytia hemisphaerica|type=transcript|length=1191bp
ACCGCTTGTACTAAGCGAGTCGAGAACTATGAATATGCGAGAGAAAATCT
TTTAACAAAGAAAGCATATGTCTCAAATCGGACTTAGACCACATAACATC
ATAACAACTTAACTATTTTTTAGCGCAACGTTGATTATTCGTTCTTATTA
GAGAAAAATATGTTACTGTCCTCAAGTAGGACAATTTAAGTAAAACATAT
TTTCAACAGAAGCGAATTTTTTAATAAAGTCAAGAAGtgaaatattgaat
tttgaagttCAAGTAGAAGAAAGAAGACTTTGGACGCAGACTTTTTGCCA
TCTTGAGTTGATTTTGCGTTTGAGGAGGCGCCATTTCGCGGGATGAGGAA
GGCAGGCATGATGAGAAAAGCCTCTGGCGGCCGCGGTGGAGCCAAAATGG
GTGCCAACAAAGCTATGGCCGCTAAGGCACGTAACGCAGCCGCCCGTGGA
AGAGCGGGTGGTCGTTTTGGAGGCGGTGGTGGACAAGCAAATTCCTCCCA
GAATGCTCAAATGCGTATGATGCAACAAAACAGTAGGCGTGATATGGCAA
GCATGAATAACATGATGGGAGGTGGTATGGGTGGAATGCCGCCCCCATAC
ATGATGTCGCCTGAACTAAACAATTTTGAACACACCTCCATGTATGGAAT
GGGAGGAGGTGGAGGGGGTGGTGATCCCTCTGCGCCCATGATGTATGATT
TCCCACCTGGTGAAGGAATGCCAATGATGGGTGGAATGGGTGGACCACCC
ATGGGAACGATTCCAGAAGGCGCTCCACCAGCCGAGGGTGTTGCTCCTGG
TGAGGGCGGAGAAGTGGTGAAGAAAGCACCCCCGCCACCAATGCCTCAGT
ATCCagatttctttaaaaagacAATCCCCTTAAAAAGGGCCACTAAATAT
ATCGCACTTGCTCTTATGATCATAACGTGTATTGTAGTGGTAATATTAAT
TGTTTTTGAACAGTTCGGATAAAACACATGGACATTATTTTGCAAGATTT
ATGATTTGTCCTTGCATATTTGGCCTTTGTCTGTATGATATGGAAGTATT
TAGCTAGAAAGCCTTATGAAATTTGTATCCGTATGTACATTATAAAATTC
ATTTTGGACGGGtaatttttattgtaatttaTTCTAAAGAAACAAGCAGA
TAAAAACGACATTAAATTTACGATTATAGTTAGTATTTTTG
Run BLAST on NCBI

transcript from alignment at sc0000796:94147..96035-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00030152 ID=TCONS_00030152|Name=TCONS_00030152|organism=Clytia hemisphaerica|type=transcript|length=1889bp|location=Sequence derived from alignment at sc0000796:94147..96035- (Clytia hemisphaerica)
ACCGCTTGTACTAAGCGAGTCGAGAACTATGAATATGCGAGAGAAAATCT
TTTAACAAAGAAAGCATATGTCTCAAATCGGACTTAGACCACATAACATC
ATAACAACTTAACTATTTTTTAGCGCAACGTTGATTATTCGTTCTTATTA
GAGAAAAATATGTTACTGTCCTCAAGTAGGACAATTTAAGTAAAACATAT
TTTCAACAGAAGCGAATTTTTTAATAAAGTCAAGAAGTGAAATATTGAAT
TTTGAAGTTCAAGTAGAAGAAAGAAGACTTTGGACGCAGACTTTTTGCCA
TCTTGAGTTGATTTTGCGTTTGAGGAGGCGCCATTTCGGTAAGTAGGGAA
AATATCATATATTGATATTATGAGAGCACCATTCCTCTGAGGACTGAGTA
GCCTTCTCACCAAATGTTTTCTATTTTAATTCACACATTACTGTGCGTAA
AATTTGCACTAAGAATTTTTCAGTATTGATGCAAAATGAGTTTTCGATTT
TCAATATTTCCGGTACTCTTCAGTGGTGTGCAGTTTAAAGATTCACGGTA
AGATAAGATCGGCGAAATTCTATGATTTTGCTGGTTAAAACTGCATTTTC
ATGTTACGGATTCAATGAATTACGAAATGAAATTTTATTTTGAGAGATCA
TTTAAATCGTATTTTATTCGTATTTTCATTTTTTGAATTCGAATATTTTT
CTACGGAAAACTTGTAACTGGGAGAACCCGATAGTTCCTGGAAACATATC
TGAGAGTCACGAAGTTTTGTTGTTTAAGAGTCCCTTTTGAGACTAGGAAT
TCAACGGGATTGGTATAAAAGATCTAACATTTGATAATAATGGTATTCTT
AATAATTTAATTCAAATCGTAGGATTGCTTGTAGGCAGGATTAAAAAAAA
ACAGGCAAGAAACTTGAAATCGAAACTTACTTCGTTTGTTCAACTGTCTT
TTTCACTTTAAATTTTAAAGGAAAGATTTTTAGAACAAGGAATAAATTTA
ATCATAAAGCATTAATCATAACTTTTGCATTTTTAGCGGGATGAGGAAGG
CAGGCATGATGAGAAAAGCCTCTGGCGGCCGCGGTGGAGCCAAAATGGGT
GCCAACAAAGCTATGGCCGCTAAGGCACGTAACGCAGCCGCCCGTGGAAG
AGCGGGTGGTCGTTTTGGAGGCGGTGGTGGACAAGCAAATTCCTCCCAGA
ATGCTCAAATGCGTATGATGCAACAAAACAGTAGGCGTGATATGGCAAGC
ATGAATAACATGATGGGAGGTGGTATGGGTGGAATGCCGCCCCCATACAT
GATGTCGCCTGAACTAAACAATTTTGAACACACCTCCATGTATGGAATGG
GAGGAGGTGGAGGGGGTGGTGATCCCTCTGCGCCCATGATGTATGATTTC
CCACCTGGTGAAGGAATGCCAATGATGGGTGGAATGGGTGGACCACCCAT
GGGAACGATTCCAGAAGGCGCTCCACCAGCCGAGGGTGTTGCTCCTGGTG
AGGGCGGAGAAGTGGTGAAGAAAGCACCCCCGCCACCAATGCCTCAGTAT
CCAGATTTCTTTAAAAAGACAATCCCCTTAAAAAGGGCCACTAAATATAT
CGCACTTGCTCTTATGATCATAACGTGTATTGTAGTGGTAATATTAATTG
TTTTTGAACAGTTCGGATAAAACACATGGACATTATTTTGCAAGATTTAT
GATTTGTCCTTGCATATTTGGCCTTTGTCTGTATGATATGGAAGTATTTA
GCTAGAAAGCCTTATGAAATTTGTATCCGTATGTACATTATAAAATTCAT
TTTGGACGGGTAATTTTTATTGTAATTTATTCTAAAGAAACAAGCAGATA
AAAACGACATTAAATTTACGATTATAGTTAGTATTTTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_017253XLOC_017253Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00030152-exon-sc0000796-1575043694:95698..96035TCONS_00030152-exon-sc0000796-1575043694:95698..96035Clytia hemisphaericaexon
TCONS_00030152-exon-sc0000796-1575043694:94147..94999TCONS_00030152-exon-sc0000796-1575043694:94147..94999Clytia hemisphaericaexon
TCONS_00030152-exon-sc0000796-1510915933:95698..96035TCONS_00030152-exon-sc0000796-1510915933:95698..96035Clytia hemisphaericaexon
TCONS_00030152-exon-sc0000796-1510915933:94147..94999TCONS_00030152-exon-sc0000796-1510915933:94147..94999Clytia hemisphaericaexon
TCONS_00030152-exon-sc0000796-1491911889:95698..96035TCONS_00030152-exon-sc0000796-1491911889:95698..96035Clytia hemisphaericaexon
TCONS_00030152-exon-sc0000796-1491911889:94147..94999TCONS_00030152-exon-sc0000796-1491911889:94147..94999Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000796supercontigsc0000796:94147..96035 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0.423218	0	0	0.134829	0.280043	0	0	9.56117	0.139106	0.646519	0	8.62448	6.88372	2.32446	2.95858	3.48259	2.13684	0.277983	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00030152 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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