TCONS_00030151 (transcript) - C. hemisphaerica

Overview
NameTCONS_00030151
Unique NameTCONS_00030151
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1016

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00030151 ID=TCONS_00030151|Name=TCONS_00030151|organism=Clytia hemisphaerica|type=transcript|length=1016bp
CTCTGAGGACTGAGTAGCCTTCTCACCAAATGTTTTCTATTTTAATTCAC
ACATTACTGTGCGTAAAATTTGCACTAAGAATTTTTCAGTATTGATGCAA
AATGAGTTTTCGATTTTCAATATTTCCGGTACTCTTCAGTGGTGTGCAGT
TTAAAGATTCACGCGGGATGAGGAAGGCAGGCATGATGAGAAAAGCCTCT
GGCGGCCGCGGTGGAGCCAAAATGGGTGCCAACAAAGCTATGGCCGCTAA
GGCACGTAACGCAGCCGCCCGTGGAAGAGCGGGTGGTCGTTTTGGAGGCG
GTGGTGGACAAGCAAATTCCTCCCAGAATGCTCAAATGCGTATGATGCAA
CAAAACAGTAGGCGTGATATGGCAAGCATGAATAACATGATGGGAGGTGG
TATGGGTGGAATGCCGCCCCCATACATGATGTCGCCTGAACTAAACAATT
TTGAACACACCTCCATGTATGGAATGGGAGGAGGTGGAGGGGGTGGTGAT
CCCTCTGCGCCCATGATGTATGATTTCCCACCTGGTGAAGGAATGCCAAT
GATGGGTGGAATGGGTGGACCACCCATGGGAACGATTCCAGAAGGCGCTC
CACCAGCCGAGGGTGTTGCTCCTGGTGAGGGCGGAGAAGTGGTGAAGAAA
GCACCCCCGCCACCAATGCCTCAGTATCCagatttctttaaaaagacAAT
CCCCTTAAAAAGGGCCACTAAATATATCGCACTTGCTCTTATGATCATAA
CGTGTATTGTAGTGGTAATATTAATTGTTTTTGAACAGTTCGGATAAAAC
ACATGGACATTATTTTGCAAGATTTATGATTTGTCCTTGCATATTTGGCC
TTTGTCTGTATGATATGGAAGTATTTAGCTAGAAAGCCTTATGAAATTTG
TATCCGTATGTACATTATAAAATTCATTTTGGACGGGtaatttttattgt
aatttaTTCTAAAGAAACAAGCAGATAAAAACGACATTAAATTTACGATT
ATAGTTAGTATTTTTG
Run BLAST on NCBI

protein sequence of TCONS_00030151-protein

>TCONS_00030151-protein ID=TCONS_00030151-protein|Name=TCONS_00030151-protein|organism=Clytia hemisphaerica|type=polypeptide|length=231bp
MSFRFSIFPVLFSGVQFKDSRGMRKAGMMRKASGGRGGAKMGANKAMAAK
ARNAAARGRAGGRFGGGGGQANSSQNAQMRMMQQNSRRDMASMNNMMGGG
MGGMPPPYMMSPELNNFEHTSMYGMGGGGGGGDPSAPMMYDFPPGEGMPM
MGGMGGPPMGTIPEGAPPAEGVAPGEGGEVVKKAPPPPMPQYPDFFKKTI
PLKRATKYIALALMIITCIVVVILIVFEQFG
Run BLAST on NCBI

transcript from alignment at sc0000796:94147..95651-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00030151 ID=TCONS_00030151|Name=TCONS_00030151|organism=Clytia hemisphaerica|type=transcript|length=1505bp|location=Sequence derived from alignment at sc0000796:94147..95651- (Clytia hemisphaerica)
CTCTGAGGACTGAGTAGCCTTCTCACCAAATGTTTTCTATTTTAATTCAC
ACATTACTGTGCGTAAAATTTGCACTAAGAATTTTTCAGTATTGATGCAA
AATGAGTTTTCGATTTTCAATATTTCCGGTACTCTTCAGTGGTGTGCAGT
TTAAAGATTCACGGTAAGATAAGATCGGCGAAATTCTATGATTTTGCTGG
TTAAAACTGCATTTTCATGTTACGGATTCAATGAATTACGAAATGAAATT
TTATTTTGAGAGATCATTTAAATCGTATTTTATTCGTATTTTCATTTTTT
GAATTCGAATATTTTTCTACGGAAAACTTGTAACTGGGAGAACCCGATAG
TTCCTGGAAACATATCTGAGAGTCACGAAGTTTTGTTGTTTAAGAGTCCC
TTTTGAGACTAGGAATTCAACGGGATTGGTATAAAAGATCTAACATTTGA
TAATAATGGTATTCTTAATAATTTAATTCAAATCGTAGGATTGCTTGTAG
GCAGGATTAAAAAAAAACAGGCAAGAAACTTGAAATCGAAACTTACTTCG
TTTGTTCAACTGTCTTTTTCACTTTAAATTTTAAAGGAAAGATTTTTAGA
ACAAGGAATAAATTTAATCATAAAGCATTAATCATAACTTTTGCATTTTT
AGCGGGATGAGGAAGGCAGGCATGATGAGAAAAGCCTCTGGCGGCCGCGG
TGGAGCCAAAATGGGTGCCAACAAAGCTATGGCCGCTAAGGCACGTAACG
CAGCCGCCCGTGGAAGAGCGGGTGGTCGTTTTGGAGGCGGTGGTGGACAA
GCAAATTCCTCCCAGAATGCTCAAATGCGTATGATGCAACAAAACAGTAG
GCGTGATATGGCAAGCATGAATAACATGATGGGAGGTGGTATGGGTGGAA
TGCCGCCCCCATACATGATGTCGCCTGAACTAAACAATTTTGAACACACC
TCCATGTATGGAATGGGAGGAGGTGGAGGGGGTGGTGATCCCTCTGCGCC
CATGATGTATGATTTCCCACCTGGTGAAGGAATGCCAATGATGGGTGGAA
TGGGTGGACCACCCATGGGAACGATTCCAGAAGGCGCTCCACCAGCCGAG
GGTGTTGCTCCTGGTGAGGGCGGAGAAGTGGTGAAGAAAGCACCCCCGCC
ACCAATGCCTCAGTATCCAGATTTCTTTAAAAAGACAATCCCCTTAAAAA
GGGCCACTAAATATATCGCACTTGCTCTTATGATCATAACGTGTATTGTA
GTGGTAATATTAATTGTTTTTGAACAGTTCGGATAAAACACATGGACATT
ATTTTGCAAGATTTATGATTTGTCCTTGCATATTTGGCCTTTGTCTGTAT
GATATGGAAGTATTTAGCTAGAAAGCCTTATGAAATTTGTATCCGTATGT
ACATTATAAAATTCATTTTGGACGGGTAATTTTTATTGTAATTTATTCTA
AAGAAACAAGCAGATAAAAACGACATTAAATTTACGATTATAGTTAGTAT
TTTTG

Coding sequence (CDS) from alignment at sc0000796:94147..95651-

>TCONS_00030151 ID=TCONS_00030151|Name=TCONS_00030151|organism=Clytia hemisphaerica|type=CDS|length=1392bp|location=Sequence derived from alignment at sc0000796:94147..95651- (Clytia hemisphaerica)
CGGGATGAGGAAGGCAGGCATGATGAGAAAAGCCTCTGGCGGCCGCGGTG
GAGCCAAAATGGGTGCCAACAAAGCTATGGCCGCTAAGGCACGTAACGCA
GCCGCCCGTGGAAGAGCGGGTGGTCGTTTTGGAGGCGGTGGTGGACAAGC
AAATTCCTCCCAGAATGCTCAAATGCGTATGATGCAACAAAACAGTAGGC
GTGATATGGCAAGCATGAATAACATGATGGGAGGTGGTATGGGTGGAATG
CCGCCCCCATACATGATGTCGCCTGAACTAAACAATTTTGAACACACCTC
CATGTATGGAATGGGAGGAGGTGGAGGGGGTGGTGATCCCTCTGCGCCCA
TGATGTATGATTTCCCACCTGGTGAAGGAATGCCAATGATGGGTGGAATG
GGTGGACCACCCATGGGAACGATTCCAGAAGGCGCTCCACCAGCCGAGGG
TGTTGCTCCTGGTGAGGGCGGAGAAGTGGTGAAGAAAGCACCCCCGCCAC
CAATGCCTCAGTATCCAGATTTCTTTAAAAAGACAATCCCCTTAAAAAGG
GCCACTAAATATATCGCACTTGCTCTTATGATCATAACGTGTATTGTAGT
GGTAATATTAATTGTTTTTGAACAGTTCGGATAAATGAGTTTTCGATTTT
CAATATTTCCGGTACTCTTCAGTGGTGTGCAGTTTAAAGATTCACGCGGG
ATGAGGAAGGCAGGCATGATGAGAAAAGCCTCTGGCGGCCGCGGTGGAGC
CAAAATGGGTGCCAACAAAGCTATGGCCGCTAAGGCACGTAACGCAGCCG
CCCGTGGAAGAGCGGGTGGTCGTTTTGGAGGCGGTGGTGGACAAGCAAAT
TCCTCCCAGAATGCTCAAATGCGTATGATGCAACAAAACAGTAGGCGTGA
TATGGCAAGCATGAATAACATGATGGGAGGTGGTATGGGTGGAATGCCGC
CCCCATACATGATGTCGCCTGAACTAAACAATTTTGAACACACCTCCATG
TATGGAATGGGAGGAGGTGGAGGGGGTGGTGATCCCTCTGCGCCCATGAT
GTATGATTTCCCACCTGGTGAAGGAATGCCAATGATGGGTGGAATGGGTG
GACCACCCATGGGAACGATTCCAGAAGGCGCTCCACCAGCCGAGGGTGTT
GCTCCTGGTGAGGGCGGAGAAGTGGTGAAGAAAGCACCCCCGCCACCAAT
GCCTCAGTATCCAGATTTCTTTAAAAAGACAATCCCCTTAAAAAGGGCCA
CTAAATATATCGCACTTGCTCTTATGATCATAACGTGTATTGTAGTGGTA
ATATTAATTGTTTTTGAACAGTTCGGATAAATGAGTTTTCGATTTTCAAT
ATTTCCGGTACTCTTCAGTGGTGTGCAGTTTAAAGATTCACG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_017253XLOC_017253Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00030151-proteinTCONS_00030151-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00030151-exon-sc0000796-1575043694:95489..95651TCONS_00030151-exon-sc0000796-1575043694:95489..95651Clytia hemisphaericaexon
TCONS_00030151-exon-sc0000796-1575043694:94147..94999TCONS_00030151-exon-sc0000796-1575043694:94147..94999Clytia hemisphaericaexon
TCONS_00030151-exon-sc0000796-1510915933:95489..95651TCONS_00030151-exon-sc0000796-1510915933:95489..95651Clytia hemisphaericaexon
TCONS_00030151-exon-sc0000796-1510915933:94147..94999TCONS_00030151-exon-sc0000796-1510915933:94147..94999Clytia hemisphaericaexon
TCONS_00030151-exon-sc0000796-1491911889:95489..95651TCONS_00030151-exon-sc0000796-1491911889:95489..95651Clytia hemisphaericaexon
TCONS_00030151-exon-sc0000796-1491911889:94147..94999TCONS_00030151-exon-sc0000796-1491911889:94147..94999Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000796supercontigsc0000796:94147..95651 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.177858	0	0.226083	0.317484	1.00025	0.0815493	0.489939	0.585576	0.47917	0.296874	0.574157	0.133948	6.0218	1.28527	0.615275	1.27147	7.27256	10.7805	3.47229	2.54064	2.32308	2.83396	0.32483	0.386003	0.048795	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00030151 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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