TCONS_00030113 (transcript) - C. hemisphaerica

Overview
NameTCONS_00030113
Unique NameTCONS_00030113
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length379

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00030113 ID=TCONS_00030113|Name=TCONS_00030113|organism=Clytia hemisphaerica|type=transcript|length=379bp
GGGCAAAGGAAGTAAAAAGGGTGATCAAGGGGGTGTGCCTGATGTCCTTG
CTCGCTGGACATGTTTCTCTAATATAGATTTAAATGAGATACGACATTCA
ACCTCATGCCAGTTTTCTATTAGAGTTCGACAAAGTTCAATCTCCTCTGA
CTTTTCATTGTGGTGGTTTCTcttgaatttgatatttttgccaaaaataa
tttgcagtaGATTTAAGTTGCTATCAATAATAATATCTACTACTCTCCGT
ACGAAGCTAAAGTCTATGTTATTGGTTGGGTGGTTGAACATATCATATAT
ATAAGAGcaagttttgtttttagaaacattttatacattatatgttacga
gtgtgttacaattttccggtctgtagttt
Run BLAST on NCBI

transcript from alignment at sc0000794:150684..151062

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00030113 ID=TCONS_00030113|Name=TCONS_00030113|organism=Clytia hemisphaerica|type=transcript|length=379bp|location=Sequence derived from alignment at sc0000794:150684..151062 (Clytia hemisphaerica)
aaactacagaccggaaaattgtaacacactcgtaacatataatgtataaa
atgtttctaaaaacaaaacttgCTCTTATATATATGATATGTTCAACCAC
CCAACCAATAACATAGACTTTAGCTTCGTACGGAGAGTAGTAGATATTAT
TATTGATAGCAACTTAAATCtactgcaaattatttttggcaaaaatatca
aattcaagAGAAACCACCACAATGAAAAGTCAGAGGAGATTGAACTTTGT
CGAACTCTAATAGAAAACTGGCATGAGGTTGAATGTCGTATCTCATTTAA
ATCTATATTAGAGAAACATGTCCAGCGAGCAAGGACATCAGGCACACCCC
CTTGATCACCCTTTTTACTTCCTTTGCCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_017228XLOC_017228Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00030113-exon-sc0000794-1491911889:150684..151062TCONS_00030113-exon-sc0000794-1491911889:150684..151062Clytia hemisphaericaexon
TCONS_00030113-exon-sc0000794-1510915933:150684..151062TCONS_00030113-exon-sc0000794-1510915933:150684..151062Clytia hemisphaericaexon
TCONS_00030113-exon-sc0000794-1575043694:150684..151062TCONS_00030113-exon-sc0000794-1575043694:150684..151062Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000794supercontigsc0000794:150684..151062 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.46085	2.4421	1.18146	0.462351	4.78437	2.44632	2.68307	2.00949	0.703445	0.435665	2.11434	1.38988	1.52674	1.29726	0.711015	1.01737	2.03664	2.40864	2.66214	1.62501	2.01776	1.18103	1.19641	1.5228	0.896256	4.99929	1.14464	0	0.694898	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00030113 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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