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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00030096 ID=TCONS_00030096|Name=TCONS_00030096|organism=Clytia hemisphaerica|type=transcript|length=1737bpRun BLAST on NCBI protein sequence of TCONS_00030096-protein >TCONS_00030096-protein ID=TCONS_00030096-protein|Name=TCONS_00030096-protein|organism=Clytia hemisphaerica|type=polypeptide|length=440bp MSVEEETDFLPLHETIFLKDAKRLEHLIESQKYDIDKKDKFGNTALHIAARun BLAST on NCBI transcript from alignment at sc0000794:43901..74107+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00030096 ID=TCONS_00030096|Name=TCONS_00030096|organism=Clytia hemisphaerica|type=transcript|length=30207bp|location=Sequence derived from alignment at sc0000794:43901..74107+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000794:43901..74107+ >TCONS_00030096 ID=TCONS_00030096|Name=TCONS_00030096|organism=Clytia hemisphaerica|type=CDS|length=25137bp|location=Sequence derived from alignment at sc0000794:43901..74107+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00030096 vs. Swiss-Prot (Human)
Match: AN13C (Ankyrin repeat domain-containing protein 13C OS=Homo sapiens GN=ANKRD13C PE=2 SV=2) HSP 1 Score: 457.603 bits (1176), Expect = 2.891e-154 Identity = 222/433 (51.27%), Postives = 310/433 (71.59%), Query Frame = 2
Query: 131 PLHETIFLKDAKRLEHLIESQKYDIDKKDKFGNTALHIAAMIGATDCLQCLLKHKADANIKNLNGWTPLAETVSYGSRTAIKSILRRIKQQNRENMDIRRPTLVKTLKDLNDFEMELRWEFHSWVPLLSRLLPSDVCKISKKGSAIRMDSTLIEFTDMKWKRGDITFLFRGDKETSENLIVMDNENKVFQKIQRNEIDSTLEEEVDYLMCSDIVSAQMSTKTINFTPAQNGWIFKEDKVEVIGKVSCDVYHVHGMNLISKKRREHLSEEDMRKNKELSEAFHRGDTMLMENEKCQPLTRKNSLTPPMENPWSFVNYIESS---GLYLGRDPRQTESKKTIKGNVWMSEDFPLSTDLILNILNVIAPAKHFQKMKDFVSLKLPPGFPVKIEIPVLPTIVARVSFHDFEWKNELDDDLFVLPTEYKEDPNHFPDL 1420
P+HE +F D +RL LI + ++I +KD GNT LH+A M+G +C LL H A +KN GW+PLAE +SYG R I ++LR++KQQ+RE+++ +RP L+K LK+L DF +EL W+F SWVPLLSR+LPSD CKI K+G IR+D+TLI+FTDMK +RGD++F+F GD SE+ +V+DNE KV+Q+I E + EEEVD LM SDI SA +STK+I+FT AQ GW+F+EDK E +G D Y V+G+ L S+KRREHLSEED+ +NK + E+ +G ++ +N +P+ R+ SLTPP +N ++ YI + +LGR+ ESKKT K + MS++FPL +L+LN+L V+AP KHF K+++FV +KLPPGFPVK++IPV PTI A V+F +F + +E D +F +P +YKEDP+ FPDL
Sbjct: 115 PVHECVFKGDVRRLSSLIRT--HNIGQKDNHGNTPLHLAVMLGNKECAHLLLAHNAPVKVKNAQGWSPLAEAISYGDRQMITALLRKLKQQSRESVEEKRPRLLKALKELGDFYLELHWDFQSWVPLLSRILPSDACKIYKQGINIRLDTTLIDFTDMKCQRGDLSFIFNGDAAPSESFVVLDNEQKVYQRIHHEESEMETEEEVDILMSSDIYSATLSTKSISFTRAQTGWLFREDKTERVGNFLADFYLVNGLVLESRKRREHLSEEDILRNKAIMESLSKGGNIMEQN--FEPI-RRQSLTPPPQNTITWEEYISAENGKAPHLGRELVCKESKKTFKATIAMSQEFPLGIELLLNVLEVVAPFKHFNKLREFVQMKLPPGFPVKLDIPVFPTITATVTFQEFRY-DEFDGSIFTIPDDYKEDPSRFPDL 541 The following BLAST results are available for this feature:
BLAST of TCONS_00030096 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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