TCONS_00030082 (transcript) - C. hemisphaerica

Overview
NameTCONS_00030082
Unique NameTCONS_00030082
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length266

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00030082 ID=TCONS_00030082|Name=TCONS_00030082|organism=Clytia hemisphaerica|type=transcript|length=266bp
GCTTTAGATAACGAACTTTTATAAACACGTGTCTTCGTTTAGAAGATTCC
ATTCAACTGCACTTTTTTCCACTCATTGGCTCCTTTCAAAGAACTTTATT
TGAGAGTTGCATTAATGAACACTAGAGATGGCAAACTATTTAGAGGATAG
ACAGACTGTATGTAGCTTAGTGTAAAAAGTAGACTTTAAGTACTTTCTAA
AACTCATAAATATCTTCCCAACGGCTGAACAAATATTTCTATCCATTAAG
ATTTTGTAATTATTca
Run BLAST on NCBI

transcript from alignment at sc0000790:10104..10369

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00030082 ID=TCONS_00030082|Name=TCONS_00030082|organism=Clytia hemisphaerica|type=transcript|length=266bp|location=Sequence derived from alignment at sc0000790:10104..10369 (Clytia hemisphaerica)
tgAATAATTACAAAATCTTAATGGATAGAAATATTTGTTCAGCCGTTGGG
AAGATATTTATGAGTTTTAGAAAGTACTTAAAGTCTACTTTTTACACTAA
GCTACATACAGTCTGTCTATCCTCTAAATAGTTTGCCATCTCTAGTGTTC
ATTAATGCAACTCTCAAATAAAGTTCTTTGAAAGGAGCCAATGAGTGGAA
AAAAGTGCAGTTGAATGGAATCTTCTAAACGAAGACACGTGTTTATAAAA
GTTCGTTATCTAAAGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_017209XLOC_017209Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00030082-exon-sc0000790-1491911889:10104..10369TCONS_00030082-exon-sc0000790-1491911889:10104..10369Clytia hemisphaericaexon
TCONS_00030082-exon-sc0000790-1510915933:10104..10369TCONS_00030082-exon-sc0000790-1510915933:10104..10369Clytia hemisphaericaexon
TCONS_00030082-exon-sc0000790-1575043694:10104..10369TCONS_00030082-exon-sc0000790-1575043694:10104..10369Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000790supercontigsc0000790:10104..10369 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	3.48851	0.173383	0	0	0	0	0	0.696092	6.82899	1.97028	0.554742	0	0	2.3783	41.6024	27.1185	8.16423	9.43212	0	1.36057	1.16607	0.751273	2.83873	2.19595	0.207979	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00030082 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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