TCONS_00030070 (transcript) - C. hemisphaerica

Overview
NameTCONS_00030070
Unique NameTCONS_00030070
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1477

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00030070 ID=TCONS_00030070|Name=TCONS_00030070|organism=Clytia hemisphaerica|type=transcript|length=1477bp
TATAGTTTCTCGTGCTTCACCAACTTCGTTAAACTGTGGAAATAGCAAAA
GTGCAAAACACCATATCGATTTCAACTCTGGTTCTCCGAACGATCTTAAT
CCTCCGAAAGATCTTTATTCTCCAAACAGTTCTGGAACAATTTCTCGCAC
AATCAACACACCATCGCGAAAATCGAACCATAGCAATGGCAAAAGTGCGA
AACACCAATTCCAATACTCTGTTATGATGGAGATGCAAACTATTCGAAGG
AACCAAGATCGGATTCTGCAATTCCTGGAGGATCAGCAGTGCACGAGTGA
TGAAACGGGTTTTGGTACTGAGGTTCCAGAACCTTTGAATACCATGGCAG
AATTTATGAAAGAGGAGGCGGAACTGGAGGGATCCGAAAGAAAGAGAAGG
GCAAAGCGGATGATCATTCAGCAAGCTGGTGGAAAGTGTACGCGGGACGC
CGTCCGGAAAGCTTTAGACGTTATGATGACGAGAAAGCTACgaagcaaat
tttcaaaggaCGGCCtgcagaagaagaaaaaatttacaGGCACGCAGCAT
CAAAAGTGTATGGAAGCTGTATTAATTCGAAAGTACCAAAAAGATGAGAT
CAATAGACTTTTGGTGGATGTTATTAAACGTGCGGTCGACAAAGAATCAG
AGCCATCAGACCAAGCTGCTTGTGGAATTGACAATCCTGCAAATGACAAC
GATTCTAATTAAACAGTGAAAAATTAGTCCCCACCTAAGCTCTAAAGTCG
AAAAAATACTTTCCGTAACTTTAATCTTACTTATCTAAAAGACATTTCAT
AAATCTCCAAAGTTTAATAAGAATTGCGTTTGCTGTAGCGATGAGTTATG
GAAACTTTTGtgaacatattttttttataataataagcAACCAAATTGCT
AGTGTTCCAGCCCTGAAATTAGACAATTTCACTATCTCCTAAAGTATAAG
GTTTTAGATatccaataagcataaatatggtgtAATATCAGAGGtggtgg
tcaaagcaaattcCTCagaatgagctagaatgctaggCAACCCCAGCCGC
ATGACccgaaaaattgaagaaacttataaaaaatttGTATTATCTTCAAA
AATTAGAAAAGCTGCTGTAGTAATCCTTTCCTTTCGTTACTTTATTTTGT
CGAGTTTTGATACTTCAGTTCATACCTTTCAAGTACTCTGTTATCCTCGA
TAGTGGGGAAAGAGATTGAACCCCAAATAAATACCTATTTTATGTAAATG
AAGTGAACAACTATCCCTTTTCAAATATTAGGTTAACATATTCTATTGTA
TCTATTTATTTTATTTTCATTTAATCGTTAATTATTTTTCTCTAAGATAT
TATGAAATATTTTTACAAATTTGCCTTTTCGAACGAATTATCTTGTTATT
ATTGTAATATAATTGTAATATATGTATATCATATATAGAATTGTACATTT
CTATTTATTTTTCTCGAAAATATTACG
Run BLAST on NCBI

transcript from alignment at sc0000790:129578..133028+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00030070 ID=TCONS_00030070|Name=TCONS_00030070|organism=Clytia hemisphaerica|type=transcript|length=3451bp|location=Sequence derived from alignment at sc0000790:129578..133028+ (Clytia hemisphaerica)
TATAGTTTCTCGTGCTTCACCAACTTCGTTAAACTGTGGAAATAGCAAAA
GTGCAAAACACCGTAAGTTTATTCACTGTTTTTTTATTTGTAACATAAAA
TTCATAGTTTTTACACTTAAGTTGATCTTTTATGATTTTTAACGATGCTA
CTTTATGAATTGAGTGAACATTAAAGGTATTTTACATGATGCTGGGCGTG
GTCACGAGTTTTCACCTAAACGACACCCAGGTTTTCATGTGAATATCAAA
AATAAAACGTACGGAATTAAATTGTCATTTAAAATGTCATTTCATTTTTA
AGATATCGATTTCAACTCTGGTTCTCCGAACGATCTTAATCCTCCGAAAG
ATCTTTATTCTCCAAACAGTTCTGGAACAAGTATGTTATATGATCACTTC
AGCTAGAATGTTTACCACTTTGTCTTTTCAGTCTATCTCTGTTTCCGAGC
TTTATAAGAACGTCAACATTGCCAGTTTATTATTGGTAGATAATTTTGGA
GTTTCTCTCTTATTTTCTTTCACAGCAAGTATTTTTTGTTCGATATCTTT
TGGTCCGGGCCCAAGAAAACACTTTCAACTAATTTTGAACATATTTTAGG
GGTAGTTTACTTTGAGGACGATATACTTTTTACTTTTAAGTTAAAATTAT
CAGAACTAAATGTCTAATTTTAAAGTTATTAGCTTAGAAGAGCTATTATG
TGATATTTTACCAAACTCTCTCCATAGTTTCTCGCACAATCAACACACCA
TCGCGAAAATCGAACCATAGCAATGGCAAAAGTGCGAAACACCGTAAGAT
TTTTCTGTTTTGAATTCTTTCATGCACCAACACGGGTAATTAGGTCATGA
AGATCCTTATCGACTGTGAGGATTTAATTTGATACTAATTCTGTTCTGCT
TTCCGAAAGATAATCAAAATGATTTCCAAGTTTCTGCCAAGACAAATCTT
TTGTGAAAATTGAACATAGATCCAAATGTTTCGATTTTCCTGGAGTATCT
CCACAATACGATCACTGCAAAAAGAGTTAGGGTCAATATTTAAACTCATT
GTGTGAAAGTTTGCCTTAAAAAAACTAATGTTATATATCTTTAATGATTA
TCTTTATAGCGTCCCAGTCAAACCTACGCTCGAAATATGGAGATGGCGGA
AAGAGCTTTAAGGAAATGCCAAACAAACGTAAGTACACAACTTTGGAAAT
CATTCTTTTTCCAATAAATTTAGAATCTTGAAAAACAGATATAATGACAA
AGCAAGAAATAGTGAGAGTCACGATGTTCTAAAACCTTCTTTATTTGTGT
ACGGGTTTGTCAAAGCAAACCAATATTTAGGGTCAGTCGGGCCCGTAGAA
CAATAAATCAGTTTAGCCTCGCTTTATACACCATATGTGATCAATTCGGT
CCATAAGATCACAGAAGTGCACTTTTTTTTAAATTTTTGATCATTTAATT
TTGTTAGAGTAAAAAGTAAATAATGGATCCTCTGTGTGCTCAAGTGTTTA
TAAATATATGAATTCTTTGTTTGTTTTTCAGACTGTATTGATACACTAGG
CATTTACTTATCACAGTTCTTTCTTTTACCCCCTTCAGAATTCCAATACT
CTGTTATGATGGAGATGCAAACTATTCGAAGGAACCAAGATCGGATTCTG
CAATTCCTGGAGGATCAGCAGTGCACGAGTGATGAAACGGGTTTTGGTAC
TGAGGTTCCAGAACCTTTGAATACCATGGCAGAATTTATGAAAGAGGAGG
CGGAACTGGAGGGATCCGAAAGAAAGAGAAGGGCAAAGGTATGTTGTCTA
TGATGTAGCTAAATTGGCAGTTGGGTGAATTTAATACACTAGTCTTAAAG
GAAAAACGAGTAAAGTTTAATTCGACTATATTGAAAGTGGGAGAATAACG
ACCTCGAAAATTGATAAATTGCCACAGAGCAGGACGACCTGCATTTTGAA
tcggaaaattaaaaataaggataattaaaaaaacaaaaactcataTGTTT
TTCCTCTTAGCGGATGATCATTCAGCAAGCTGGTGGAAAGTGTACGCGGG
ACGCCGTCCGGAAAGCTTTAGACGTTATGATGACGAGAAAGCTACgaagc
aaattttcaaaggaCGGCCtgcagaagaagaaaaaatttacaGGCACGCA
GCATCAAAAGTGTATGGAAGGTAAGACATTATTAGTTGAAAGTtatatta
atttattgttctacgggcTCGACCGGACttgttttttccaaaatcgaaaa
actNTACAGGCACGCAGCATCAAAAGTGTATGGAAGGTAAGACATTATTA
GTTGAAACTtatattaatttattgttctacgggcTCGACCGGACttgttt
tttccaaaatcgaaaaactgATGATATAGAATCATGATGGAATGGAGTTT
ATAACCTTCTCGTAGATTTTTTTGCAACTGAAAAAGTGTAAATATATCCT
AGAACttgattgaataagatattgGTGAACAAATAAATGAAAGAACATGT
TGTTCGGGTGTTGTACCTTTTTAAATATCTTATTTTACAGCTGTATTAAT
TCGAAAGTACCAAAAAGATGAGATCAATAGACTTTTGGTGGATGTTATTA
AACGTGCGGTCGACAAAGAATCAGAGCCATCAGACCAAGCTGCTTGTGGA
ATTGACAATCCTGCAAATGACAACGATTCTAATTAAACAGTGAAAAATTA
GTCCCCACCTAAGCTCTAAAGTCGAAAAAATACTTTCCGTAACTTTAATC
TTACTTATCTAAAAGACATTTCATAAATCTCCAAAGTTTAATAAGAATTG
CGTTTGCTGTAGCGATGAGTTATGGAAACTTTTGtgaacatatttttttt
ataataataagcAACCAAATTGCTAGTGTTCCAGCCCTGAAATTAGACAA
TTTCACTATCTCCTAAAGTATAAGGTTTTAGATatccaataagcataaat
atggtgtAATATCAGAGGtggtggtcaaagcaaattcCTCagaatgagct
agaatgctaggCAACCCCAGCCGCATGACccgaaaaattgaagaaactta
taaaaaatttGTATTATCTTCAAAAATTAGAAAAGCTGCTGTAGTAATCC
TTTCCTTTCGTTACTTTATTTTGTCGAGTTTTGATACTTCAGTTCATACC
TTTCAAGTACTCTGTTATCCTCGATAGTGGGGAAAGAGATTGAACCCCAA
ATAAATACCTATTTTATGTAAATGAAGTGAACAACTATCCCTTTTCAAAT
ATTAGGTTAACATATTCTATTGTATCTATTTATTTTATTTTCATTTAATC
GTTAATTATTTTTCTCTAAGATATTATGAAATATTTTTACAAATTTGCCT
TTTCGAACGAATTATCTTGTTATTATTGTAATATAATTGTAATATATGTA
TATCATATATAGAATTGTACATTTCTATTTATTTTTCTCGAAAATATTAC
G
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_017203XLOC_017203Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00030070-exon-sc0000790-1491911889:129578..129639TCONS_00030070-exon-sc0000790-1491911889:129578..129639Clytia hemisphaericaexon
TCONS_00030070-exon-sc0000790-1510915933:129578..129639TCONS_00030070-exon-sc0000790-1510915933:129578..129639Clytia hemisphaericaexon
TCONS_00030070-exon-sc0000790-1575043694:129578..129639TCONS_00030070-exon-sc0000790-1575043694:129578..129639Clytia hemisphaericaexon
TCONS_00030070-exon-sc0000790-1491911889:129880..129957TCONS_00030070-exon-sc0000790-1491911889:129880..129957Clytia hemisphaericaexon
TCONS_00030070-exon-sc0000790-1510915933:129880..129957TCONS_00030070-exon-sc0000790-1510915933:129880..129957Clytia hemisphaericaexon
TCONS_00030070-exon-sc0000790-1575043694:129880..129957TCONS_00030070-exon-sc0000790-1575043694:129880..129957Clytia hemisphaericaexon
TCONS_00030070-exon-sc0000790-1491911889:130305..130370TCONS_00030070-exon-sc0000790-1491911889:130305..130370Clytia hemisphaericaexon
TCONS_00030070-exon-sc0000790-1510915933:130305..130370TCONS_00030070-exon-sc0000790-1510915933:130305..130370Clytia hemisphaericaexon
TCONS_00030070-exon-sc0000790-1575043694:130305..130370TCONS_00030070-exon-sc0000790-1575043694:130305..130370Clytia hemisphaericaexon
TCONS_00030070-exon-sc0000790-1491911889:131166..131365TCONS_00030070-exon-sc0000790-1491911889:131166..131365Clytia hemisphaericaexon
TCONS_00030070-exon-sc0000790-1510915933:131166..131365TCONS_00030070-exon-sc0000790-1510915933:131166..131365Clytia hemisphaericaexon
TCONS_00030070-exon-sc0000790-1575043694:131166..131365TCONS_00030070-exon-sc0000790-1575043694:131166..131365Clytia hemisphaericaexon
TCONS_00030070-exon-sc0000790-1491911889:131588..131720TCONS_00030070-exon-sc0000790-1491911889:131588..131720Clytia hemisphaericaexon
TCONS_00030070-exon-sc0000790-1510915933:131588..131720TCONS_00030070-exon-sc0000790-1510915933:131588..131720Clytia hemisphaericaexon
TCONS_00030070-exon-sc0000790-1575043694:131588..131720TCONS_00030070-exon-sc0000790-1575043694:131588..131720Clytia hemisphaericaexon
TCONS_00030070-exon-sc0000790-1491911889:131837..131863TCONS_00030070-exon-sc0000790-1491911889:131837..131863Clytia hemisphaericaexon
TCONS_00030070-exon-sc0000790-1510915933:131837..131863TCONS_00030070-exon-sc0000790-1510915933:131837..131863Clytia hemisphaericaexon
TCONS_00030070-exon-sc0000790-1575043694:131837..131863TCONS_00030070-exon-sc0000790-1575043694:131837..131863Clytia hemisphaericaexon
TCONS_00030070-exon-sc0000790-1491911889:132118..133028TCONS_00030070-exon-sc0000790-1491911889:132118..133028Clytia hemisphaericaexon
TCONS_00030070-exon-sc0000790-1510915933:132118..133028TCONS_00030070-exon-sc0000790-1510915933:132118..133028Clytia hemisphaericaexon
TCONS_00030070-exon-sc0000790-1575043694:132118..133028TCONS_00030070-exon-sc0000790-1575043694:132118..133028Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000790supercontigsc0000790:129578..133028 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0.0455137	0	0	0.0463562	0	0	0	0.16218	0.125771	0.191077	0	0.66619	0.460773	0.390006	0.362754	0.171005	0.204791	0.408575	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00030070 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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