TCONS_00030064 (transcript) - C. hemisphaerica

Overview
NameTCONS_00030064
Unique NameTCONS_00030064
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length540

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00030064 ID=TCONS_00030064|Name=TCONS_00030064|organism=Clytia hemisphaerica|type=transcript|length=540bp
TGAGTATGTTTCTCGACATGAAATATATCTACGATGAAATCTAGCGCCTc
gtattttttttgcaattagATTCCCCTCGTTATTCAACCGTTGTATGAAA
GGATGCAATCCACACGAACGATCGTACACAATTCCAGATAAATTTTGAGC
TGTTTCTCCAAACGTGTCAATAAGATACAAAAATACTGAAGATAACGACT
CTGAAGTGTACATTTCATAGTGTGATAAACGTATACCACAGGGTCTGAAT
AAATAAAACATTCCTGCTGTCCTCGAATGAAAACGATCGACATTCTCCTC
TTTCTTACAGCTATCTTCATCGACAACTACATTGTCTAAATTTTTAGCAA
ATTGTCTGGTGAACGGTCTCATGTCCAGTTGCGTTATTGTTTCACCGGTT
TTTTCATTTTCATGTACATGACAGAACTTTGATTTGGTTTGGTGTTGGTT
ACCTCTCTGGGGATTTTGTATGCACAACTCATATGAGTTCACCTCTCCAC
CGCAACCTAAAACACGCGTTTTGGGTGCATCACATATCAG
Run BLAST on NCBI

protein sequence of TCONS_00030064-protein

>TCONS_00030064-protein ID=TCONS_00030064-protein|Name=TCONS_00030064-protein|organism=Clytia hemisphaerica|type=polypeptide|length=180bp
LICDAPKTRVLGCGGEVNSYELCIQNPQRGNQHQTKSKFCHVHENEKTGE
TITQLDMRPFTRQFAKNLDNVVVDEDSCKKEENVDRFHSRTAGMFYLFRP
CGIRLSHYEMYTSESLSSVFLYLIDTFGETAQNLSGIVYDRSCGLHPFIQ
RLNNEGNLIAKKIRGARFHRRYISCRETYS
Run BLAST on NCBI

transcript from alignment at sc0000789:148139..148678

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00030064 ID=TCONS_00030064|Name=TCONS_00030064|organism=Clytia hemisphaerica|type=transcript|length=540bp|location=Sequence derived from alignment at sc0000789:148139..148678 (Clytia hemisphaerica)
CTGATATGTGATGCACCCAAAACGCGTGTTTTAGGTTGCGGTGGAGAGGT
GAACTCATATGAGTTGTGCATACAAAATCCCCAGAGAGGTAACCAACACC
AAACCAAATCAAAGTTCTGTCATGTACATGAAAATGAAAAAACCGGTGAA
ACAATAACGCAACTGGACATGAGACCGTTCACCAGACAATTTGCTAAAAA
TTTAGACAATGTAGTTGTCGATGAAGATAGCTGTAAGAAAGAGGAGAATG
TCGATCGTTTTCATTCGAGGACAGCAGGAATGTTTTATTTATTCAGACCC
TGTGGTATACGTTTATCACACTATGAAATGTACACTTCAGAGTCGTTATC
TTCAGTATTTTTGTATCTTATTGACACGTTTGGAGAAACAGCTCAAAATT
TATCTGGAATTGTGTACGATCGTTCGTGTGGATTGCATCCTTTCATACAA
CGGTTGAATAACGAGGGGAATctaattgcaaaaaaaatacgAGGCGCTAG
ATTTCATCGTAGATATATTTCATGTCGAGAAACATACTCA

Coding sequence (CDS) from alignment at sc0000789:148139..148678

>TCONS_00030064 ID=TCONS_00030064|Name=TCONS_00030064|organism=Clytia hemisphaerica|type=CDS|length=540bp|location=Sequence derived from alignment at sc0000789:148139..148678 (Clytia hemisphaerica)
CTGATATGTGATGCACCCAAAACGCGTGTTTTAGGTTGCGGTGGAGAGGT
GAACTCATATGAGTTGTGCATACAAAATCCCCAGAGAGGTAACCAACACC
AAACCAAATCAAAGTTCTGTCATGTACATGAAAATGAAAAAACCGGTGAA
ACAATAACGCAACTGGACATGAGACCGTTCACCAGACAATTTGCTAAAAA
TTTAGACAATGTAGTTGTCGATGAAGATAGCTGTAAGAAAGAGGAGAATG
TCGATCGTTTTCATTCGAGGACAGCAGGAATGTTTTATTTATTCAGACCC
TGTGGTATACGTTTATCACACTATGAAATGTACACTTCAGAGTCGTTATC
TTCAGTATTTTTGTATCTTATTGACACGTTTGGAGAAACAGCTCAAAATT
TATCTGGAATTGTGTACGATCGTTCGTGTGGATTGCATCCTTTCATACAA
CGGTTGAATAACGAGGGGAATctaattgcaaaaaaaatacgAGGCGCTAG
ATTTCATCGTAGATATATTTCATGTCGAGAAACATACTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_017199XLOC_017199Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00030064-exon-sc0000789-1491911889:148139..148678TCONS_00030064-exon-sc0000789-1491911889:148139..148678Clytia hemisphaericaexon
TCONS_00030064-exon-sc0000789-1510915933:148139..148678TCONS_00030064-exon-sc0000789-1510915933:148139..148678Clytia hemisphaericaexon
TCONS_00030064-exon-sc0000789-1575043694:148139..148678TCONS_00030064-exon-sc0000789-1575043694:148139..148678Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00030064-proteinTCONS_00030064-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000789supercontigsc0000789:148139..148678 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.165083	0.104521	0	0.593653	0	0.305229	0.0284906	0	0.297009	0	0	0.0578298	0.0860225	0	0.0866456	0.130629	0	0.0824712	0	0.0637226	0	0	0	0	1.62484	0.270281	0	0	0	0.121207
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00030064 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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