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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00030063 ID=TCONS_00030063|Name=TCONS_00030063|organism=Clytia hemisphaerica|type=transcript|length=1221bp
CACCAATAAATCGTCGGGAatgaaaatcatcaaagatCTGATGGAAGATG
TGGAGAATAAAGCCGGAGAATCTCATACCTTTGACAGCGGGACATTGGAA
GGTTTAATGCAATCTATGCGAATTAATAATGGCAGTACCCTTGCATGTCA
CGACGAATTTGCTACATTTTTCGATGGATTGGACAAAGGAACGTCAGGCA
GCAGCGAGCGTTCAAGGTACCTATCTTTATACTCCGGAACCAGTTGGTCG
AAAAAGACGAAAACGAGTGGTAATTTAGAGCTTTTCGACCCTCGTCTATC
GATTATGTCCTTCACGCAGCCTTATTATGCCGTCCAGTTTGCCAGAAACA
ATCTCTCTGATGGTTTTTATCAGCGGTTCTTGATAAGTGTGCCTGAAGAA
GTATATATCAAACGTGCcgacaaaaagaaaaagctcGAAGAAAGCAAAGA
TTTGGTGGACATGAAGGGCGTTTTGAGCAAAATATACAACAGATGTGTGG
ACAATAACATCAAATTAGCATTGACTGAAGAGGCCGAATTAATTTATGAT
GCATGTCACGATGCTATTGTCGACTACCGTATGGAGGAGAAATTCGAGGA
AGCGAAGTTGTCCATCAAAAGTAAGTCCCTTGGCTTATTACTACGCGTTT
CTGGGGTCATTTCGTTACTTCGCACTGCATTGCAAAACGATCACAGTAAT
TCTGACTTTGTGACAGAGGCTGACATCAATATCGCTAACAAAATTGTTTC
TTTATTCTGTTGAAATGGCTTTTTCTCTTCTAAAGGGTCCTGCTGTTGAA
AAACCCAAAAAGAACAATAGCGTCATTAAATTTAAGCCTCCTTTACCGGA
GCCTGAAAATTTGACCATGGATTATTTAGTCACTTATCAAAAGTGTGCCA
AAAGACTTTTATCCAATGAATCCAGTCCACACTCTGTGGTATCGAGAGAT
GAAATTTATCCTATCGTCAATAATGTCTTTGGCTCGCAAATCGCTAACAA
ATTTATCGGTGGCATGGAGAAACTTGGCTTTGGGCACGTCTCGCCAgcat
caaaaagttttaaacgTCACAATCCAGATGATAATTCGTGTCCAAATAAA
GAGGAGCTACGAAAGAGGTATAAAATGCTGAATTTAATATGAtaaacttt
atattttattgGTGTAGTTAATAGAAGTTTCTACTTTTCGGCCGTGTTTC
TTCAAATGGAGAAGATCTTTT Run BLAST on NCBI protein sequence of TCONS_00030063-protein >TCONS_00030063-protein ID=TCONS_00030063-protein|Name=TCONS_00030063-protein|organism=Clytia hemisphaerica|type=polypeptide|length=253bp
TNKSSGMKIIKDLMEDVENKAGESHTFDSGTLEGLMQSMRINNGSTLACH
DEFATFFDGLDKGTSGSSERSRYLSLYSGTSWSKKTKTSGNLELFDPRLS
IMSFTQPYYAVQFARNNLSDGFYQRFLISVPEEVYIKRADKKKKLEESKD
LVDMKGVLSKIYNRCVDNNIKLALTEEAELIYDACHDAIVDYRMEEKFEE
AKLSIKSKSLGLLLRVSGVISLLRTALQNDHSNSDFVTEADINIANKIVS
LFC Run BLAST on NCBI transcript from alignment at sc0000789:144496..145716 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00030063 ID=TCONS_00030063|Name=TCONS_00030063|organism=Clytia hemisphaerica|type=transcript|length=1221bp|location=Sequence derived from alignment at sc0000789:144496..145716 (Clytia hemisphaerica)
AAAAGATCTTCTCCATTTGAAGAAACACGGCCGAAAAGTAGAAACTTCTA
TTAACTACACcaataaaatataaagtttaTCATATTAAATTCAGCATTTT
ATACCTCTTTCGTAGCTCCTCTTTATTTGGACACGAATTATCATCTGGAT
TGTGAcgtttaaaactttttgatgcTGGCGAGACGTGCCCAAAGCCAAGT
TTCTCCATGCCACCGATAAATTTGTTAGCGATTTGCGAGCCAAAGACATT
ATTGACGATAGGATAAATTTCATCTCTCGATACCACAGAGTGTGGACTGG
ATTCATTGGATAAAAGTCTTTTGGCACACTTTTGATAAGTGACTAAATAA
TCCATGGTCAAATTTTCAGGCTCCGGTAAAGGAGGCTTAAATTTAATGAC
GCTATTGTTCTTTTTGGGTTTTTCAACAGCAGGACCCTTTAGAAGAGAAA
AAGCCATTTCAACAGAATAAAGAAACAATTTTGTTAGCGATATTGATGTC
AGCCTCTGTCACAAAGTCAGAATTACTGTGATCGTTTTGCAATGCAGTGC
GAAGTAACGAAATGACCCCAGAAACGCGTAGTAATAAGCCAAGGGACTTA
CTTTTGATGGACAACTTCGCTTCCTCGAATTTCTCCTCCATACGGTAGTC
GACAATAGCATCGTGACATGCATCATAAATTAATTCGGCCTCTTCAGTCA
ATGCTAATTTGATGTTATTGTCCACACATCTGTTGTATATTTTGCTCAAA
ACGCCCTTCATGTCCACCAAATCTTTGCTTTCTTCgagctttttcttttt
gtcgGCACGTTTGATATATACTTCTTCAGGCACACTTATCAAGAACCGCT
GATAAAAACCATCAGAGAGATTGTTTCTGGCAAACTGGACGGCATAATAA
GGCTGCGTGAAGGACATAATCGATAGACGAGGGTCGAAAAGCTCTAAATT
ACCACTCGTTTTCGTCTTTTTCGACCAACTGGTTCCGGAGTATAAAGATA
GGTACCTTGAACGCTCGCTGCTGCCTGACGTTCCTTTGTCCAATCCATCG
AAAAATGTAGCAAATTCGTCGTGACATGCAAGGGTACTGCCATTATTAAT
TCGCATAGATTGCATTAAACCTTCCAATGTCCCGCTGTCAAAGGTATGAG
ATTCTCCGGCTTTATTCTCCACATCTTCCATCAGatctttgatgattttc
atTCCCGACGATTTATTGGTG Coding sequence (CDS) from alignment at sc0000789:144496..145716 >TCONS_00030063 ID=TCONS_00030063|Name=TCONS_00030063|organism=Clytia hemisphaerica|type=CDS|length=762bp|location=Sequence derived from alignment at sc0000789:144496..145716 (Clytia hemisphaerica)
TCAACAGAATAAAGAAACAATTTTGTTAGCGATATTGATGTCAGCCTCTG
TCACAAAGTCAGAATTACTGTGATCGTTTTGCAATGCAGTGCGAAGTAAC
GAAATGACCCCAGAAACGCGTAGTAATAAGCCAAGGGACTTACTTTTGAT
GGACAACTTCGCTTCCTCGAATTTCTCCTCCATACGGTAGTCGACAATAG
CATCGTGACATGCATCATAAATTAATTCGGCCTCTTCAGTCAATGCTAAT
TTGATGTTATTGTCCACACATCTGTTGTATATTTTGCTCAAAACGCCCTT
CATGTCCACCAAATCTTTGCTTTCTTCgagctttttctttttgtcgGCAC
GTTTGATATATACTTCTTCAGGCACACTTATCAAGAACCGCTGATAAAAA
CCATCAGAGAGATTGTTTCTGGCAAACTGGACGGCATAATAAGGCTGCGT
GAAGGACATAATCGATAGACGAGGGTCGAAAAGCTCTAAATTACCACTCG
TTTTCGTCTTTTTCGACCAACTGGTTCCGGAGTATAAAGATAGGTACCTT
GAACGCTCGCTGCTGCCTGACGTTCCTTTGTCCAATCCATCGAAAAATGT
AGCAAATTCGTCGTGACATGCAAGGGTACTGCCATTATTAATTCGCATAG
ATTGCATTAAACCTTCCAATGTCCCGCTGTCAAAGGTATGAGATTCTCCG
GCTTTATTCTCCACATCTTCCATCAGatctttgatgattttcatTCCCGA
CGATTTATTGGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00030063-exon-sc0000789-1491911889:144496..145716 | TCONS_00030063-exon-sc0000789-1491911889:144496..145716 | Clytia hemisphaerica | exon |
| TCONS_00030063-exon-sc0000789-1510915933:144496..145716 | TCONS_00030063-exon-sc0000789-1510915933:144496..145716 | Clytia hemisphaerica | exon |
| TCONS_00030063-exon-sc0000789-1575043694:144496..145716 | TCONS_00030063-exon-sc0000789-1575043694:144496..145716 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000789 | supercontig | sc0000789:144496..145716 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR025048 | DUF3987 |
Blast
The following BLAST results are available for this feature:
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