TCONS_00030060 (transcript) - C. hemisphaerica

Overview
NameTCONS_00030060
Unique NameTCONS_00030060
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length313

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00030060 ID=TCONS_00030060|Name=TCONS_00030060|organism=Clytia hemisphaerica|type=transcript|length=313bp
cttgaaataaaaagattgcCACTGGTGTTAGAACAGATACTTTCCTTTtt
atctccagctggaaatagagagctGTTCCTGTGGAATTACAAAGTTGCTC
CTGGCAAATCGGAACAGCTATTTTAAGGAACAAAGCAAAAATTCTTTTGT
AGAGCTGTTCCTGACAATCTGGGACTTTTTCTAGACAAAATTTacttttc
cagctggaaatttggAGCTGTTCCGAAGAAGCTAAATATgtcaacttttt
agaaatattctCCTGGCTGGCAAATCGGAACAGCTATTTCGCCTTTTTGC
cccggtggctgct
Run BLAST on NCBI

transcript from alignment at sc0000789:122055..122367

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00030060 ID=TCONS_00030060|Name=TCONS_00030060|organism=Clytia hemisphaerica|type=transcript|length=313bp|location=Sequence derived from alignment at sc0000789:122055..122367 (Clytia hemisphaerica)
agcagccaccgggGCAAAAAGGCGAAATAGCTGTTCCGATTTGCCAGCCA
GGagaatatttctaaaaagttgacATATTTAGCTTCTTCGGAACAGCTcc
aaatttccagctggaaaagtAAATTTTGTCTAGAAAAAGTCCCAGATTGT
CAGGAACAGCTCTACAAAAGAATTTTTGCTTTGTTCCTTAAAATAGCTGT
TCCGATTTGCCAGGAGCAACTTTGTAATTCCACAGGAACagctctctatt
tccagctggagataaAAAGGAAAGTATCTGTTCTAACACCAGTGgcaatc
tttttatttcaag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_017195XLOC_017195Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00030060-exon-sc0000789-1491911889:122055..122367TCONS_00030060-exon-sc0000789-1491911889:122055..122367Clytia hemisphaericaexon
TCONS_00030060-exon-sc0000789-1510915933:122055..122367TCONS_00030060-exon-sc0000789-1510915933:122055..122367Clytia hemisphaericaexon
TCONS_00030060-exon-sc0000789-1575043694:122055..122367TCONS_00030060-exon-sc0000789-1575043694:122055..122367Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000789supercontigsc0000789:122055..122367 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.02309	0.665116	0.772263	0.37777	0	1.45367	2.19224	1.23141	1.4369	1.77983	0.345509	2.49837	1.36085	0.942171	2.71107	3.32503	3.07212	2.62402	2.53766	3.41418	2.63782	2.41244	1.95509	1.42197	0	1.6339	1.87048	0.998113	1.89258	1.15695
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00030060 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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