TCONS_00030059 (transcript) - C. hemisphaerica

Overview
NameTCONS_00030059
Unique NameTCONS_00030059
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length333

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00030059 ID=TCONS_00030059|Name=TCONS_00030059|organism=Clytia hemisphaerica|type=transcript|length=333bp
AAGAACTATCCAGAAGCTGTACGAAACAAGATTCAGACGTATACAGTGGA
ACCAATTCCTGAAAATCTCTTCAAACAGTGTAAATCACAATATTCCAAGC
TTGGGAAAAAGGGAGACGCTGAAAAATTCTACAAGAACTTCTACTCTACT
GTAATTTTGAATTCAGATATCTATTTCTCAGGCTTTGAAAAGCCATACTC
AACTTTAATCGCCAAGCGACTGGCAGACAAAATCTTGGCCCTTCACCGTC
GACCTGCTGCTGGTCCAGAACCCAAACCTCCAATTATTACTGAGCGCGAG
ATGAGTGGTTTACAATACATTTCTGGTTATGTC
Run BLAST on NCBI

protein sequence of TCONS_00030059-protein

>TCONS_00030059-protein ID=TCONS_00030059-protein|Name=TCONS_00030059-protein|organism=Clytia hemisphaerica|type=polypeptide|length=111bp
KNYPEAVRNKIQTYTVEPIPENLFKQCKSQYSKLGKKGDAEKFYKNFYST
VILNSDIYFSGFEKPYSTLIAKRLADKILALHRRPAAGPEPKPPIITERE
MSGLQYISGYV
Run BLAST on NCBI

transcript from alignment at sc0000789:108841..109173

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00030059 ID=TCONS_00030059|Name=TCONS_00030059|organism=Clytia hemisphaerica|type=transcript|length=333bp|location=Sequence derived from alignment at sc0000789:108841..109173 (Clytia hemisphaerica)
GACATAACCAGAAATGTATTGTAAACCACTCATCTCGCGCTCAGTAATAA
TTGGAGGTTTGGGTTCTGGACCAGCAGCAGGTCGACGGTGAAGGGCCAAG
ATTTTGTCTGCCAGTCGCTTGGCGATTAAAGTTGAGTATGGCTTTTCAAA
GCCTGAGAAATAGATATCTGAATTCAAAATTACAGTAGAGTAGAAGTTCT
TGTAGAATTTTTCAGCGTCTCCCTTTTTCCCAAGCTTGGAATATTGTGAT
TTACACTGTTTGAAGAGATTTTCAGGAATTGGTTCCACTGTATACGTCTG
AATCTTGTTTCGTACAGCTTCTGGATAGTTCTT

Coding sequence (CDS) from alignment at sc0000789:108841..109173

>TCONS_00030059 ID=TCONS_00030059|Name=TCONS_00030059|organism=Clytia hemisphaerica|type=CDS|length=333bp|location=Sequence derived from alignment at sc0000789:108841..109173 (Clytia hemisphaerica)
GACATAACCAGAAATGTATTGTAAACCACTCATCTCGCGCTCAGTAATAA
TTGGAGGTTTGGGTTCTGGACCAGCAGCAGGTCGACGGTGAAGGGCCAAG
ATTTTGTCTGCCAGTCGCTTGGCGATTAAAGTTGAGTATGGCTTTTCAAA
GCCTGAGAAATAGATATCTGAATTCAAAATTACAGTAGAGTAGAAGTTCT
TGTAGAATTTTTCAGCGTCTCCCTTTTTCCCAAGCTTGGAATATTGTGAT
TTACACTGTTTGAAGAGATTTTCAGGAATTGGTTCCACTGTATACGTCTG
AATCTTGTTTCGTACAGCTTCTGGATAGTTCTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_017194XLOC_017194Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00030059-exon-sc0000789-1491911889:108841..109173TCONS_00030059-exon-sc0000789-1491911889:108841..109173Clytia hemisphaericaexon
TCONS_00030059-exon-sc0000789-1510915933:108841..109173TCONS_00030059-exon-sc0000789-1510915933:108841..109173Clytia hemisphaericaexon
TCONS_00030059-exon-sc0000789-1575043694:108841..109173TCONS_00030059-exon-sc0000789-1575043694:108841..109173Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00030059-proteinTCONS_00030059-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000789supercontigsc0000789:108841..109173 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.286105	0	0	0	3.47246	3.35376	5.88533	3.09925	1.92876	3.88226	0	1.14327	0.951397	1.97607	0.48738	1.22041	0.429556	0.880562	0	0.636513	1.10649	1.61912	0.656085	0.596476	0	0	3.13845	1.67472	1.27022	1.61769
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00030059 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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