TCONS_00030039 (transcript) - C. hemisphaerica

Overview
NameTCONS_00030039
Unique NameTCONS_00030039
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length757

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00030039 ID=TCONS_00030039|Name=TCONS_00030039|organism=Clytia hemisphaerica|type=transcript|length=757bp
TCAGTCTCAGTCTCACGCTGGAAAATCCAAAATGGTGGTCGTAACTTTCG
GAAAAACAAGTTTACCATGAAAAAGGCATGCTGTCGTCAGAAAAAGGAGC
TGAAACTGCGCATCAAACcaaagcaataatttcaaactttgacTGAAGTC
GTTGCAGCTTCTCTCGAACATGTGTTCAACTTCAAATGTACATTGTACAA
TAAATTTTCGTGAAAAGTCTTCTTGCAGAAAAATTGCACCAACGTTGGAT
GCACTTTTGCTTTATCCCTGTCGACCCCTTATCAATGTTATGTCTGGAAG
AAAAAGTGTGAGCCGTTTCTTTCACTTCCATCGCCAATTGATAATGGATT
GTATAAAGATTTTGGAGGATTGTTTAAATCAGAATATATATTTTGGGAAG
TGTTTTAGAACTCGTCTCTTGCAAATCTAAAAATGGATACAAGACAAATT
TTTGCTCGGGCAAAATGGCTGGTTCGAATTATTGTAGGACATTCCTTTGT
CAGATTTTGCACGAATGGTGAGACTGATGAATTGCAAAACCATTCAAATG
ACTAGGAAAGTAATTGTTGTTAAGAATGCTTTAAATTGCTATAGAAGATA
CCCCCTTAATGGGACAAAGGCGATTCTTTCAAGTTTATTAggatttttga
acaaaaatatcacatATTATCTACTATTTAATGTTTTGATACAATTTTTA
TGATGTAAATAATTTAGATTAACCTTTATTATCTTACAACAACAATCAAC
AGAGCCA
Run BLAST on NCBI

transcript from alignment at sc0000788:52820..59753-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00030039 ID=TCONS_00030039|Name=TCONS_00030039|organism=Clytia hemisphaerica|type=transcript|length=6934bp|location=Sequence derived from alignment at sc0000788:52820..59753- (Clytia hemisphaerica)
TCAGTCTCAGTCTCACGCTGGAAAATCCAAAATGGTGGTCGTAACTTTCG
GAAAAACAAGTTTACCATGAAAAAGGCATGCTGTCGTCAGAAAAAGGTAT
AAAAGTCCATGAGTAAAAGATTTTGGGTTACTTAAGTTTAAAAAGTTTCA
ATATATTGTATACAACAGCAGTTTAGATGTTTAGATACTTGTTCAAAAGT
GTGGCCAACTACTGATTTTCTAATTGATGACCAACAATCGATGGATATTG
CATTGGATATTGGCGATTGTATTGATCCCAGTAATCAATAAGACAGTCGG
TAATCATGTTTTCAAGGAAGTGTCAGACCAGACGTATATAATGTTGTCTC
TGAAAAAGTTTTCACTACACTTTATACCGTGAAGAAGTTGGGTAACTTGC
ATCTATCAGTGGAGGGAAAGCTGTATAGCCATCAAATGACTGACCAAAGC
AGCAAAATTTCAAAACGAATGCGCAGCTCTGCTGGCAGCTCTACTCTACC
ATTTTTGTGTTGATTAAACTTTGTATTTTAATGACCAGCCAGGTCATTCA
TTTGAGGGCTATATGCAAGTTTCCCGACTTCACGGTATATAGCTAATAAA
CACCTAATTGCAAACAACACGTAAAGAACAATCAGATTCTAGTGTTTATC
AGATTCTAGTGATTATTTGTCGTTTAAACTGATTGTTGTGTGCTGATAAA
ATAACTGTTCAAAACAAATAAATAAAGTTTGTTATTTTTAATTGCTCTTG
TAGTCTTGAGAATAAATTATACAGTATATAGCCAGACATAGCTAGCGACT
CCAGAAGTCATGCAACTTTTGTTGACGTCAAACCAAATGTTTCATTTTTC
CGTGAACTTTGAACCCTTGGAACTTTTATTCTATTTATGCTAAAGCGTTC
CNCATTTTACAAATATTTTTATATAATAATATTTTAACACCATCAAAGAA
TTCTCCCTCCAAATTTGAGGTCTCTAGCTACACTAGAAAAAGAGCTATGC
AAAATTTAAGAAGCATGACTGGAAAATTTCTTTTTTTTCTTTTTTGACAC
ATTTTCGAATTTTTCCAAGCTATTTTCGTAACCTTTTTTTGACATTTTTA
GTCAAATTTTTGACACTAAAATTTGAATATCTTTACAACCACTAATCCTC
TGGAGGCCTATGACCCCTCATTTTNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNATGACCCCTCATTTTCTTTCTTTTTC
AAAGCTCTACAAGATAGGATAGATTTTGAAAAAAAAATTAAAACTTGAAA
AATCTTCTGGAGTTGCTAACATAGCCATAGTTTATCGATATAATCGATAA
TCTTGAGTAATCGATAAATAATCAATAAGTAATTGATAAATAATCAATAA
GTAATCGATGGATTAGATATCGATTAACCAATACACGCCGTTTAGGAGTG
TCTACTGCGCACGCGTCAATCCAATTTTCCATTGTTTTGATTTTAGCGAT
CACGGAAAATTCACTCTCCTCCGTAAAAAAACGGTAGGTAAACATCTCTG
GTTCTCATAAGGAAACATAGCAGAAAAACGGTAGGNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNCCTCTAACCTTTCACAGTACTAAAGTGCGCATTTTTACCTACCAT
TTTTACCGGGCCTCTGCAATGGAGTACCGTGAAATAGCGAGACTCCTAAA
CGGTGTATAGAATCGATAGGTAATTTTTCAAAGCTTGATTATTTATCGAT
CAATTTTGTCATCGATTATAGATCGATTATACTTCGATTAAATTAAGTAT
CGATAAAAAATCGATCGGCTATCGATCACAGTTGATCATCGATCAAATAG
TTAATCGATCAACTATCGATTCGTGATCGATTATTTATCAGATTTTAGGG
AGTGGTACTTTAATTGGATTAACTTTCACTTTCGCGAAATTAAAAGCAAC
ATTTTTCGCTGATCTCGATTGGGATCAGTGCTGCAAATAACGGCCGGTGA
CCGGTAATTACCGGTCATTTTGTAGTTTCTACCGGTCATTCTNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNACATACTACAAAATTTTCTAAGATGGTTCCACCAGACCCCCT
GCTCGTTACACTCGAAAAATTACCGGCCAACTGAAATTTCCTTATTTGCA
GCACTGGGGATGTATTTTAGCCTGGATATCCAGCCCGTAAACTTTTTTCT
TGATTTTGATATTTCTTATATTTACGGTCTGGTTTACCTAAATCGTCTGC
ATTCTCATCTGAGGATGATTATGTGGATATTCTGATTGGTTGGTCCAAGC
AAATCAGAGATCTGAATGGTGGCGCGTGTATAAGAAATTATGCGAGACGA
CTTGAAGTGTTCGCCTAAGTATTTGGATGGACCGCGCAGGGGATCAGCAA
GGCGCAACAAATCTCCCTGATTTTTCTTTTTTCGAAGCAAATATCAATAG
AATCTGATAGAATAGCTAATTATCTCCCTTGGGTGTTTGACCACGCATCC
AAATAGAAATAACAATAATGGTAGGGAAGAAGTGCGAAGATCAAAACATG
GGAATTTTTAGATGTTCTGGTTGTTTTCTTTTCAATTAATTGCTTAGATA
TTCTTGTTTTAATCTTCTTAATGACTTGGTTGCATTGTGTAAAGAACTAA
AGGTGTATCTTTATTTTGCTTCAATTCTTCTTTTTTGTATTGCTGTTTTG
GGTTGGATTTTGAAAAAAAAATTTCTCCAAAAATCACTTTGCACTTTCTT
TCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNGCATATATTTATTTGCAGCCATG
GGATTCATGCAGGAAAATCTGTCAACAGGGGTTCACCTGATTTCTAGGTG
AACCAAGCTCTATAATTTTAGAACTTTGTCTTGCTGAGGTAAAACTTATT
TTTTCTAAAATTTTGAGCTTGGATATCCAGGCTAGATGTATTTTTGAATT
GAATCTAATCCCCTGGTAGCATAGGGCCTAGAAAAGCTACAACACTCATT
TTTTTATAAGCATATGGTAAATTTCGGCTGAAGCATTCTCAAACCCTCTG
AAAGGCTGAACAAAAAAAAGTAAAAAAAACAACAAAGTTACCGTTTTATT
TAGAGAAGGGGCGTTATTGAATGCTTTGCCTTTTTGGAGGAGCATTATTA
ATTCGAAAGCGGGCGTTTATTCAAAGTAATACGATCGACGAGATTTGGCT
AATTCCAGAAATTTTCTTTACTTCATTAAATACCTTATCTTGGCCCTTTT
TTACGCCGGACCTTATTAGTGTTATTTTTGGGCTCGTTGGTGGAATAAGG
GTCGGTGTAAAAAGGGCTGGTGATGTAGTCAATAGTTGGTCACAATCGAT
ATATAATCGATAACGATACGTGATTGAAGATAAGTAAATAATTGATAAGT
AATGAATGCATGAATGATAAGTAATCGATGATTGTTAACGATCGATACAT
GATTGATAAGTAATCGATAAGTTGTGTGTAGTTGATGTGTGATCAATAGC
CTGGAAATAATCAATCGCTGATCGATACTCAAGATTTTTTGAAGGTCTGA
TTACCTATCGATTCTATCGGTTAATCGATATCTAATCCATCGATTATTTA
TCGATCACACAAGATTATCCATTATATCGATTAATTACGCCTGGATATAG
ATGTTATTATTTTTGCCTTTGATAACAAAATATTTTCATTGACTTGGGAA
TATGAAAAGTCTTTGGCAAAGGCGATCATGTTTTAACCGAGTTTGTTAGC
ATCTAAGCTGATTGTATACTTTAATGGGATAAACTTTTGCGGGGATTATT
TTGCGGATTTTGCAGTTTTGGGTGTCAACAAATTTTTGCATACTACCATA
TCAAAATTTTGAGATGAGTTCTGTTTGCTTCCTCAATTTTGCAAAATTTG
GAATCACTTCAGAAAAATTAGATTCATTTTAAAGTCAAAATTACACTATT
AGCTTAGAACCTTATGGTTGGAGTGTCAGAGGTGATGTCTAACCTGTTCC
CTAACAATGTGGAAAGACTTTGGAGAAATTTTGGCCATGAATCGTCTGCT
GATCGATTGCTTAAATCTTGCAAATGGCTAAGTTCTCTTCTAAACCTTGG
AACTTGACAATGAAACTTTCAAACACATAGCCATTGGAATTCAAAAGAGA
ATACTAAAATTACAACATTACAGTGAAAATTTGAAAACAATCTGAGTAGT
TTTTGTGGTGTTATGTGTATGGCTGAAAATGATCCTTTTTTGTATTCATC
ATTGCCATTGATGACACTGGCGACCGACACTGGCGACCGTCCCTTTTCTT
TTGATTTTTCAAACCCGACACAGATTTTTTACAAACATATCACTATGAGA
ATTCAGTAAAGGATACTAAAACAAAATTCCTGTGTAAATTTGAACAAGAT
CGGAGAATTTTTATATTTTTTGGACTTTGTCGTAATTTCATTGGCTGGGG
CGACTGTTCCTTTAGATTTTTCAAACCCGAAACAGGTTTTTTCCAAATAT
ACCACTATTTATTACATACACACTATTGTACCATTTTATTTGGTTTATCC
TACTCTCACCCAAGTATTATCCCAACAGAAAAAAATAATGCTTAGCTAAA
AGCCTGTGGCCTCTAATTTAAGGCTATTTTTCTCCCCGAAATTTTATCTG
GACAATCAAATCAAGAACTTGGAAATATTGACTTCTAAATGTTCATCTCC
TTTAGATCAAATTTTGAACTTTTTAGTCGAGGATGAGTGGGCGGGGGTGG
GGTTGGTTCTTTAGGCAAGAAAGTGCATGTGTAATCACTTAGAAAAGCTA
AACTTCCAGCTGGTTTATTTATTTGCTAAGATTATTTCTCATACTCGCTC
TGCAATAGAATTATTACTTTGCTTTCTGATCTGTTCTGATTAGTATTTTG
TGGGCAACGTTCTAACACAACTAACTCAACAAATTCATCTTTTAATCTCT
TAAGCCGGAGCTCCCAGCGCAGCTGGTTTATTTCTTTTTTGAATGGGCTG
ATTTTTTTCAAGATTTTTTATTCCTTTATTGTATTTTTTTCTTGATTTTC
AAAAGTTTTCTTTCTTTTTTTCTTCTTTTTTTCTTCTTTTTTATTTTACC
TTTTTAACGCTCATCAATATCACATACCTCATTGTACTCTTATGTCACCA
TACTTAGCTCCCATCTGACAATTATGATTTGTAATGAAATTCATAAAAAA
TATTTTTTATTTACTTGTTTCAGGAGCTGAAACTGCGCATCAAACCAAAG
CAATAATTTCAAACTTTGACTGAAGTCGTTGCAGCTTCTCTCGAACATGT
GTTCAACTTCAAATGTACATTGTACAATAAATTTTCGTGAAAAGTCTTCT
TGCAGAAAAATTGCACCAACGTTGGATGCACTTTTGCTTTATCCCTGTCG
ACCCCTTATCAATGTTATGTCTGGAAGAAAAAGTGTGAGCCGTTTCTTTC
ACTTCCATCGCCAATTGATAATGGATTGTATAAAGATTTTGGAGGATTGT
TTAAATCAGAATATATATTTTGGGAAGTGTTTTAGAACTCGTCTCTTGCA
AATCTAAAAATGGATACAAGACAAATTTTTGCTCGGGCAAAATGGCTGGT
TCGAATTATTGTAGGACATTCCTTTGTCAGATTTTGCACGAATGGTGAGA
CTGATGAATTGCAAAACCATTCAAATGACTAGGAAAGTAATTGTTGTTAA
GAATGCTTTAAATTGCTATAGAAGATACCCCCTTAATGGGACAAAGGCGA
TTCTTTCAAGTTTATTAGGATTTTTGAACAAAAATATCACATATTATCTA
CTATTTAATGTTTTGATACAATTTTTATGATGTAAATAATTTAGATTAAC
CTTTATTATCTTACAACAACAATCAACAGAGCCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_017178XLOC_017178Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00030039-exon-sc0000788-1575043694:59658..59753TCONS_00030039-exon-sc0000788-1575043694:59658..59753Clytia hemisphaericaexon
TCONS_00030039-exon-sc0000788-1575043694:52820..53480TCONS_00030039-exon-sc0000788-1575043694:52820..53480Clytia hemisphaericaexon
TCONS_00030039-exon-sc0000788-1510915933:59658..59753TCONS_00030039-exon-sc0000788-1510915933:59658..59753Clytia hemisphaericaexon
TCONS_00030039-exon-sc0000788-1510915933:52820..53480TCONS_00030039-exon-sc0000788-1510915933:52820..53480Clytia hemisphaericaexon
TCONS_00030039-exon-sc0000788-1491911889:59658..59753TCONS_00030039-exon-sc0000788-1491911889:59658..59753Clytia hemisphaericaexon
TCONS_00030039-exon-sc0000788-1491911889:52820..53480TCONS_00030039-exon-sc0000788-1491911889:52820..53480Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000788supercontigsc0000788:52820..59753 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.69472	3.90488	0.98579	1.36229	20.0344	11.436	11.5836	10.1423	8.0973	8.85831	8.14096	4.96641	2.10204	1.50015	0.0765633	0.0805783	0	0.0519096	0	0	0.269034	0.095115	5.98421	4.70229	13.9622	15.7496	0.775679	0.754875	3.13879	4.4257
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00030039 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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