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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00030037 ID=TCONS_00030037|Name=TCONS_00030037|organism=Clytia hemisphaerica|type=transcript|length=504bp
AGGATTTGGTTTTTGTGGCTTGATGAACATTCAATGTGGAAAAGtgaaag
caattggtcaatGGACCAATAAgATTTGGTTTTTGTGGCTTGATGAACAT
TCAACGTGGAAAAGGAAACAGTTGGTCAAGGCTCTACAGTTAAGAAAACT
TCTTGGATGGATTTGACAGACGTGATGAATGGTATACAAAGCAATTTTTG
GATGACCTGACGTTAAGAACCTAAAGTTTCCATCGATTATGCTGACTGCA
TGGTTCGCACAGCAAACGGATTCAAATTAACTTCTATCAGCAACAGACCA
GTCATAAAAGACCTATTAATTGCACCACTTGGGAACTCACCTTTCTGTGC
GAAAAGGTAGGGCAATACttacagccaattcgattgacttccaaatttgG
CATActcaccaaatttgccaaatctacaatttcaatgtcaaaagatcaca
gcttcatggcaaatttgtacatcgctacgccgccattatgatttccgttt
tgtg Run BLAST on NCBI transcript from alignment at sc0000788:38622..41312- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00030037 ID=TCONS_00030037|Name=TCONS_00030037|organism=Clytia hemisphaerica|type=transcript|length=2691bp|location=Sequence derived from alignment at sc0000788:38622..41312- (Clytia hemisphaerica)
AGGATTTGGTTTTTGTGGCTTGATGAACATTCAATGTGGAAAAGTGAAAG
CAATTGGTCAATGGACCAATAAGTAAGACCATATTTATTTTGGAAGACAC
TTTATTGAACTTTGATTGATATTATTTGCTTATTGGACCTACCTAGAGAT
CCTATAAATTAACCTGTGTTCGTTCGTTTGTCTATTCGTTCGTTCGTCTG
TTACCAAATTTTCTCGGGATTGAATCATAGGAATTTTGTGATTTTTCTGA
ACAAAACCAGGCTTCTTCATAATCTCTCTTTTTTGTTTCGAGCGTAACAC
TCTTACTCTTTGGGATTTAGAGAGTTTCAAACCTATGCACTAAGCCAACC
ATCTGTGTTTTAAACATTCTTTTACTTGACCCAGTGCTGAAGTTAAATCT
TAAATGAAATCTATATAAATCACAATTTTCAGGATTTGGTTTTTGTGCAT
AGATGAACATGCAACGTGGAAAAGGGAAAGCAGTTGGCCAAGGCTCTACA
CTTAAGCAAACTTCTTAGATGGGTAAGACCTTCATCTTGGAAGATATTTT
ATTGAACTTTCATTAACATCAATTGCTTTTTCTGAACAAAACTAGGCTAC
CTTTGTTTCGAGCGTAAAACTCTTACTCTTTGGGGTATAGTGAGTTTCAA
ACCTATGCATTAAGCCAATCATCTGTGTTTTAAACATTCTTTTATTTGAC
CCAATGCTAAAGTTAAATCTTAAATGAAATCTATATAAATGACAATTTTC
AGGATTTGGTTTTTGTGGCTTGATGAACATTCAACGTGGAAAAGGAAACA
GTTGGTCAAGGCTCTACAGTTAAGAAAACTTCTTGGATGGGTAAGACTTC
ATTCATCATTATTTTTTTAATAAAACTAGGCTACGTCATATTTCCCTTTG
TTTCGAACGTAAAACTCCTACATACTCTTCAAAACTAAGGTCTAAAAAAA
CTAGGAGCTGTGTATTGTGTAGACTAGAAAAAAAACTAAAACGCTGAAAA
ATATCACCAAAAGCAGGCTTAAGAAACAACATCGAACAAAATGGATAAAC
TTAATACCTCGTAAAATGTTCTCATTCCATGCAAAGAGTAATAGCCTGGG
GGGGGGTACTACCCTTGTCGACGGACGGGGTGCTCCGCTGAGATTCGAAA
AATGGACCCTACGTGGGACTTGAAATTTGCGAAAAAAGTGACCCTGAATG
GGACTGAAATTCCAAAATTTTCTCAAATTTTCTACTTTTTCGCCAAATTT
TCCAAAAAAATAGGCACCCTACGAGGGACTGATTTTTCTATTTTGGTGTT
TTTGCGACCCTACCTGGGACTCGTGGAGGTTAAAAAAGGTACCCTGACCA
GCGGAGCATCCCCGTAACCCATCCTGCCCTAGTACCCCCCCCCGGAGTAA
TAGTAGTTCCAAAACTTTTTAATCAAACCCATGTAACTTACTCTTAGATT
TGACAGACGTGATGAATGGTATACAAAGCAATTTTTGGATGACCTGACGT
TAAGAACCTAAAGTAAGAACTTATTGTTATCTATTTTAAGCCGAAAATTT
GACCCAATCTATCATATAGTTGTCAGTCGCACCTTTGAAACAGAAGCTTT
CATCTCCTCAGTGGGAAAAAGTTCCACCGGGGCTTTGATGTAGTTGTGTA
TGTTTCAATTCCGATACATGGTAATAAAAAATGCCTATCAGATATTGTTT
AAGGTTTTTCATTCCTGTTGATTCATATAATTTGACATCTTTTTATAAGA
AACTCAATTTTAGCTTCCGTCCTGCTTTTGCTTAGCTTTCTAGCTCTANN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGAAAAAGTTCCACCGGG
GCTTTGATGTAGTTGTGTATGTTTCAATTCCGATACATGGTAATAAAAAA
TGCCTATCAGATATTGTTTAAGGTTTTTCATTCCTGTTGATTCATATAAT
TTGACATCTTTTTATAAGAAACTCAATTTTAGCTTCCGTCCTGCTTTTGC
TTAGCTTTCTAGCTCTATGTTTGAAAAATGTGGTGCGATCACCCCTGATA
TTATACCATATTTATGCTTATTGGGTTAAGAGCTGTCGTTTGCCTTGGTT
AGATCTAAAAAAATGCTATTACGAGATGATAAAAAAATTTGGCTAATTTC
AGAGCTCAAGCCTAGTTGCTTATAAGAAAAAGAAGTGTGTTCTTTCCTGT
CTTTTCCCCTTTTCAATAGAAAAGAAAACACAATGTATTGGACAGTTTTG
GACACATTTAGCATTCAAACTCGTCTACCATTTTTTCTGTGATGATACCA
AAAATAATTTTAGTGTCTTTATTCAGCTTTACTAAAACTGTATAATTGTT
GTCTTATACTAGGTTTCCATCGATTATGCTGACTGCATGGTTCGCACAGC
AAACGGATTCAAATTAACTTCTATCAGCAACAGACCAGTCATAAAAGACC
TATTAATTGCACCACTTGGGAACTCACCTTTCTGTGCGAAAAGGTAGGGC
AATACTTACAGCCAATTCGATTGACTTCCAAATTTGGCATACTCACCAAA
TTTGCCAAATCTACAATTTCAATGTCAAAAGATCACAGCTTCATGGCAAA
TTTGTACATCGCTACGCCGCCATTATGATTTCCGTTTTGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00030037-exon-sc0000788-1575043694:41241..41312 | TCONS_00030037-exon-sc0000788-1575043694:41241..41312 | Clytia hemisphaerica | exon |
| TCONS_00030037-exon-sc0000788-1575043694:40473..40560 | TCONS_00030037-exon-sc0000788-1575043694:40473..40560 | Clytia hemisphaerica | exon |
| TCONS_00030037-exon-sc0000788-1575043694:39801..39865 | TCONS_00030037-exon-sc0000788-1575043694:39801..39865 | Clytia hemisphaerica | exon |
| TCONS_00030037-exon-sc0000788-1575043694:38622..38900 | TCONS_00030037-exon-sc0000788-1575043694:38622..38900 | Clytia hemisphaerica | exon |
| TCONS_00030037-exon-sc0000788-1510915933:41241..41312 | TCONS_00030037-exon-sc0000788-1510915933:41241..41312 | Clytia hemisphaerica | exon |
| TCONS_00030037-exon-sc0000788-1510915933:40473..40560 | TCONS_00030037-exon-sc0000788-1510915933:40473..40560 | Clytia hemisphaerica | exon |
| TCONS_00030037-exon-sc0000788-1510915933:39801..39865 | TCONS_00030037-exon-sc0000788-1510915933:39801..39865 | Clytia hemisphaerica | exon |
| TCONS_00030037-exon-sc0000788-1510915933:38622..38900 | TCONS_00030037-exon-sc0000788-1510915933:38622..38900 | Clytia hemisphaerica | exon |
| TCONS_00030037-exon-sc0000788-1491911889:41241..41312 | TCONS_00030037-exon-sc0000788-1491911889:41241..41312 | Clytia hemisphaerica | exon |
| TCONS_00030037-exon-sc0000788-1491911889:40473..40560 | TCONS_00030037-exon-sc0000788-1491911889:40473..40560 | Clytia hemisphaerica | exon |
| TCONS_00030037-exon-sc0000788-1491911889:39801..39865 | TCONS_00030037-exon-sc0000788-1491911889:39801..39865 | Clytia hemisphaerica | exon |
| TCONS_00030037-exon-sc0000788-1491911889:38622..38900 | TCONS_00030037-exon-sc0000788-1491911889:38622..38900 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000788 | supercontig | sc0000788:38622..41312 - |
Blast
The following BLAST results are available for this feature:
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