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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00030036 ID=TCONS_00030036|Name=TCONS_00030036|organism=Clytia hemisphaerica|type=transcript|length=430bp
TTTGGTTTTTGTGGCTTGATGAACATTCAACGTGGAAAAGGAAACAGTTG
GTCAAGGCTCTACAGTTAAGAAAACTTCTTGGATGGATTTGACAGACGTG
ATGAATGGTATACAAAGCAATTTTTGGATGACCTGACGTTAAGAACCTAA
AGTTTCCATCGATTATGCTGACTGCATGGTTCGCACAGCAAACGGATTCA
AATTAACTTCTATCAGCAACAGACCAGTCATAAAAGACCTATTAATTGCA
CCACTTGGGAACTCACCTTTCTGTGCGAAAAGGTAGGGCAATACttacag
ccaattcgattgacttccaaatttgGCATActcaccaaatttgccaaatc
tacaatttcaatgtcaaaagatcacagcttcatggcaaatttgtacatcg
ctacgccgccattatgatttccgttttgtg Run BLAST on NCBI transcript from alignment at sc0000788:38622..41308- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00030036 ID=TCONS_00030036|Name=TCONS_00030036|organism=Clytia hemisphaerica|type=transcript|length=2687bp|location=Sequence derived from alignment at sc0000788:38622..41308- (Clytia hemisphaerica)
TTTGGTTTTTGTGGCTTGATGAACATTCAATGTGGAAAAGTGAAAGCAAT
TGGTCAATGGACCAATAAGTAAGACCATATTTATTTTGGAAGACACTTTA
TTGAACTTTGATTGATATTATTTGCTTATTGGACCTACCTAGAGATCCTA
TAAATTAACCTGTGTTCGTTCGTTTGTCTATTCGTTCGTTCGTCTGTTAC
CAAATTTTCTCGGGATTGAATCATAGGAATTTTGTGATTTTTCTGAACAA
AACCAGGCTTCTTCATAATCTCTCTTTTTTGTTTCGAGCGTAACACTCTT
ACTCTTTGGGATTTAGAGAGTTTCAAACCTATGCACTAAGCCAACCATCT
GTGTTTTAAACATTCTTTTACTTGACCCAGTGCTGAAGTTAAATCTTAAA
TGAAATCTATATAAATCACAATTTTCAGGATTTGGTTTTTGTGCATAGAT
GAACATGCAACGTGGAAAAGGGAAAGCAGTTGGCCAAGGCTCTACACTTA
AGCAAACTTCTTAGATGGGTAAGACCTTCATCTTGGAAGATATTTTATTG
AACTTTCATTAACATCAATTGCTTTTTCTGAACAAAACTAGGCTACCTTT
GTTTCGAGCGTAAAACTCTTACTCTTTGGGGTATAGTGAGTTTCAAACCT
ATGCATTAAGCCAATCATCTGTGTTTTAAACATTCTTTTATTTGACCCAA
TGCTAAAGTTAAATCTTAAATGAAATCTATATAAATGACAATTTTCAGGA
TTTGGTTTTTGTGGCTTGATGAACATTCAACGTGGAAAAGGAAACAGTTG
GTCAAGGCTCTACAGTTAAGAAAACTTCTTGGATGGGTAAGACTTCATTC
ATCATTATTTTTTTAATAAAACTAGGCTACGTCATATTTCCCTTTGTTTC
GAACGTAAAACTCCTACATACTCTTCAAAACTAAGGTCTAAAAAAACTAG
GAGCTGTGTATTGTGTAGACTAGAAAAAAAACTAAAACGCTGAAAAATAT
CACCAAAAGCAGGCTTAAGAAACAACATCGAACAAAATGGATAAACTTAA
TACCTCGTAAAATGTTCTCATTCCATGCAAAGAGTAATAGCCTGGGGGGG
GGTACTACCCTTGTCGACGGACGGGGTGCTCCGCTGAGATTCGAAAAATG
GACCCTACGTGGGACTTGAAATTTGCGAAAAAAGTGACCCTGAATGGGAC
TGAAATTCCAAAATTTTCTCAAATTTTCTACTTTTTCGCCAAATTTTCCA
AAAAAATAGGCACCCTACGAGGGACTGATTTTTCTATTTTGGTGTTTTTG
CGACCCTACCTGGGACTCGTGGAGGTTAAAAAAGGTACCCTGACCAGCGG
AGCATCCCCGTAACCCATCCTGCCCTAGTACCCCCCCCCGGAGTAATAGT
AGTTCCAAAACTTTTTAATCAAACCCATGTAACTTACTCTTAGATTTGAC
AGACGTGATGAATGGTATACAAAGCAATTTTTGGATGACCTGACGTTAAG
AACCTAAAGTAAGAACTTATTGTTATCTATTTTAAGCCGAAAATTTGACC
CAATCTATCATATAGTTGTCAGTCGCACCTTTGAAACAGAAGCTTTCATC
TCCTCAGTGGGAAAAAGTTCCACCGGGGCTTTGATGTAGTTGTGTATGTT
TCAATTCCGATACATGGTAATAAAAAATGCCTATCAGATATTGTTTAAGG
TTTTTCATTCCTGTTGATTCATATAATTTGACATCTTTTTATAAGAAACT
CAATTTTAGCTTCCGTCCTGCTTTTGCTTAGCTTTCTAGCTCTANNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNGGAAAAAGTTCCACCGGGGCTT
TGATGTAGTTGTGTATGTTTCAATTCCGATACATGGTAATAAAAAATGCC
TATCAGATATTGTTTAAGGTTTTTCATTCCTGTTGATTCATATAATTTGA
CATCTTTTTATAAGAAACTCAATTTTAGCTTCCGTCCTGCTTTTGCTTAG
CTTTCTAGCTCTATGTTTGAAAAATGTGGTGCGATCACCCCTGATATTAT
ACCATATTTATGCTTATTGGGTTAAGAGCTGTCGTTTGCCTTGGTTAGAT
CTAAAAAAATGCTATTACGAGATGATAAAAAAATTTGGCTAATTTCAGAG
CTCAAGCCTAGTTGCTTATAAGAAAAAGAAGTGTGTTCTTTCCTGTCTTT
TCCCCTTTTCAATAGAAAAGAAAACACAATGTATTGGACAGTTTTGGACA
CATTTAGCATTCAAACTCGTCTACCATTTTTTCTGTGATGATACCAAAAA
TAATTTTAGTGTCTTTATTCAGCTTTACTAAAACTGTATAATTGTTGTCT
TATACTAGGTTTCCATCGATTATGCTGACTGCATGGTTCGCACAGCAAAC
GGATTCAAATTAACTTCTATCAGCAACAGACCAGTCATAAAAGACCTATT
AATTGCACCACTTGGGAACTCACCTTTCTGTGCGAAAAGGTAGGGCAATA
CTTACAGCCAATTCGATTGACTTCCAAATTTGGCATACTCACCAAATTTG
CCAAATCTACAATTTCAATGTCAAAAGATCACAGCTTCATGGCAAATTTG
TACATCGCTACGCCGCCATTATGATTTCCGTTTTGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00030036-exon-sc0000788-1575043694:41285..41308 | TCONS_00030036-exon-sc0000788-1575043694:41285..41308 | Clytia hemisphaerica | exon |
| TCONS_00030036-exon-sc0000788-1575043694:40473..40534 | TCONS_00030036-exon-sc0000788-1575043694:40473..40534 | Clytia hemisphaerica | exon |
| TCONS_00030036-exon-sc0000788-1575043694:39801..39865 | TCONS_00030036-exon-sc0000788-1575043694:39801..39865 | Clytia hemisphaerica | exon |
| TCONS_00030036-exon-sc0000788-1575043694:38622..38900 | TCONS_00030036-exon-sc0000788-1575043694:38622..38900 | Clytia hemisphaerica | exon |
| TCONS_00030036-exon-sc0000788-1510915933:41285..41308 | TCONS_00030036-exon-sc0000788-1510915933:41285..41308 | Clytia hemisphaerica | exon |
| TCONS_00030036-exon-sc0000788-1510915933:40473..40534 | TCONS_00030036-exon-sc0000788-1510915933:40473..40534 | Clytia hemisphaerica | exon |
| TCONS_00030036-exon-sc0000788-1510915933:39801..39865 | TCONS_00030036-exon-sc0000788-1510915933:39801..39865 | Clytia hemisphaerica | exon |
| TCONS_00030036-exon-sc0000788-1510915933:38622..38900 | TCONS_00030036-exon-sc0000788-1510915933:38622..38900 | Clytia hemisphaerica | exon |
| TCONS_00030036-exon-sc0000788-1491911889:41285..41308 | TCONS_00030036-exon-sc0000788-1491911889:41285..41308 | Clytia hemisphaerica | exon |
| TCONS_00030036-exon-sc0000788-1491911889:40473..40534 | TCONS_00030036-exon-sc0000788-1491911889:40473..40534 | Clytia hemisphaerica | exon |
| TCONS_00030036-exon-sc0000788-1491911889:39801..39865 | TCONS_00030036-exon-sc0000788-1491911889:39801..39865 | Clytia hemisphaerica | exon |
| TCONS_00030036-exon-sc0000788-1491911889:38622..38900 | TCONS_00030036-exon-sc0000788-1491911889:38622..38900 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000788 | supercontig | sc0000788:38622..41308 - |
Blast
The following BLAST results are available for this feature:
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