TCONS_00030025 (transcript) - C. hemisphaerica

Overview
NameTCONS_00030025
Unique NameTCONS_00030025
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length160

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00030025 ID=TCONS_00030025|Name=TCONS_00030025|organism=Clytia hemisphaerica|type=transcript|length=160bp
AAGAAAACAGTTGATGTATTAAGGAACATTTAAACAAGCAggATTATTCG
AACGAGCAAAGGAGAAAGTCGTAAAGATTTCCTACTGTAATTTTACATTT
GCTGAATAAAGACTTATGGGACATTACTTTTTGTGCAAAGCATTAAAATT
GTATTCAAAT
Run BLAST on NCBI

transcript from alignment at sc0000788:22621..23205+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00030025 ID=TCONS_00030025|Name=TCONS_00030025|organism=Clytia hemisphaerica|type=transcript|length=585bp|location=Sequence derived from alignment at sc0000788:22621..23205+ (Clytia hemisphaerica)
AAGAAAACAGTTGATGTATTAAGGAACATTTAAACAAGCAGTAAGTGAAA
CTTCTATATTAATCTTTAAAAAGTCTTTCTAGCTAAAATTGAGCCAATCT
TTAAGTCACAACAGACATGCATTTCAGAATTCGCTCTTAGAGCATTTCAC
AGAATATTATTACAGTTTGGAGCGTTGTTTTTTTAGGTTGGTATATTCAT
TTATGCCAACATTTTCATGCTGATTTCTTAgacatttctgaaatctgagg
ccgagtttgttttttaattatttctaaGGTTTTGGCTCAAATCAAACCTC
ACGTTCTAATAAAATTGCTCGGTTAAAgagattttatttcaagttttaat
ATATCCTTTTTTATCTTTCTATAAGTTTAATTTCTGAGTTACTTAAATGT
CTTGAAAATAGAAGATATATTGATTAGGTGAGCTTTCAACTTGtattcat
atttttcttctttagggATTATTCGAACGAGCAAAGGAGAAAGTCGTAAA
GATTTCCTACTGTAATTTTACATTTGCTGAATAAAGACTTATGGGACATT
ACTTTTTGTGCAAAGCATTAAAATTGTATTCAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_017170XLOC_017170Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00030025-exon-sc0000788-1491911889:22621..22660TCONS_00030025-exon-sc0000788-1491911889:22621..22660Clytia hemisphaericaexon
TCONS_00030025-exon-sc0000788-1510915933:22621..22660TCONS_00030025-exon-sc0000788-1510915933:22621..22660Clytia hemisphaericaexon
TCONS_00030025-exon-sc0000788-1575043694:22621..22660TCONS_00030025-exon-sc0000788-1575043694:22621..22660Clytia hemisphaericaexon
TCONS_00030025-exon-sc0000788-1491911889:23086..23205TCONS_00030025-exon-sc0000788-1491911889:23086..23205Clytia hemisphaericaexon
TCONS_00030025-exon-sc0000788-1510915933:23086..23205TCONS_00030025-exon-sc0000788-1510915933:23086..23205Clytia hemisphaericaexon
TCONS_00030025-exon-sc0000788-1575043694:23086..23205TCONS_00030025-exon-sc0000788-1575043694:23086..23205Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000788supercontigsc0000788:22621..23205 +
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00030025 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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