TCONS_00030004 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00030004
Unique Name	TCONS_00030004
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	941

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0000782:996..4221+
coding sequence from alignment at sc0000782:996..4221+

transcript sequence

>TCONS_00030004 ID=TCONS_00030004|Name=TCONS_00030004|organism=Clytia hemisphaerica|type=transcript|length=941bp
TTCAGGGGAGCTGACGTGACCATCCCGAACGGGCAAAAATTGACACCACT
CATCATTGCTGTCAAATGCAACCGTGTGGAAAACATTGCAGTTCTGATGA
GTTGCAAAGTGGCTCAGAATGAAGATAGTGATGATGGTGAGGATGAAGAA
GATGAAACTACTAGTGAAAAAGATAAAACTGACGAAGCAAACACACCAAT
GAAACCTAAGATCAACATCAACGCTAAAGACAAGAAAACATTCACTGCTC
TTCATCATGCAGCTAAACGTGGATTTAACGACTGCATTAAGGTATTGCTG
GAACACAATGCTAATGTCAATATCAAATCAAGTGCTGTTCAAGAGAATAT
GACACCACTTGGTTTGGCTGCAGCAAAAGGACATTACGAAACAGTCAAAT
TCCTCCATGAAAATGGTGCTAAACCTGACCTGAAAATGCGCCGAAATAAG
ACAGCCCTTATGTATGCATGTATGAACGGACACAGTCAAATCGTGGCTTA
CCTCTTACGCATCGGCGTTAACCCGGATGCGCGAGATAGCTCTGACAACA
CGCCGATACATTATGCGGCCGCTTACGGATGGTATCATTGTGTCAAGTTA
TTGTTAGAGGGTGGTGCCGATGCAAACATACCAAATAATTGGAAGACAAC
ACCTTTAGCAGTTGCGTTAATGAAACATTACATTGAAATCGGTGATTTAT
TGTTAGACGCTGGTGTTGATGTGAATTTTGTTGACGAGAACGGATTGACG
ATCCTGATGAAACATTTAACTGGAACGCTGTGTAAAGAACAATACACACT
TGTCAAACATCTGCTAGAGAAATATCACGCCAATCCTCAATTGACAGATG
GCTCAAGTTCTAATCTGGTAAGTGAcggaccgtagtgcagtggtaaaGCA
TCctgctacggtgcgcaaggttgtgggttcaacccccagcc

Run BLAST on NCBI

protein sequence of TCONS_00030004-protein

>TCONS_00030004-protein ID=TCONS_00030004-protein|Name=TCONS_00030004-protein|organism=Clytia hemisphaerica|type=polypeptide|length=294bp
FRGADVTIPNGQKLTPLIIAVKCNRVENIAVLMSCKVAQNEDSDDGEDEE
DETTSEKDKTDEANTPMKPKININAKDKKTFTALHHAAKRGFNDCIKVLL
EHNANVNIKSSAVQENMTPLGLAAAKGHYETVKFLHENGAKPDLKMRRNK
TALMYACMNGHSQIVAYLLRIGVNPDARDSSDNTPIHYAAAYGWYHCVKL
LLEGGADANIPNNWKTTPLAVALMKHYIEIGDLLLDAGVDVNFVDENGLT
ILMKHLTGTLCKEQYTLVKHLLEKYHANPQLTDGSSSNLVSDGP

Run BLAST on NCBI

transcript from alignment at sc0000782:996..4221+

Legend: exonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00030004 ID=TCONS_00030004|Name=TCONS_00030004|organism=Clytia hemisphaerica|type=transcript|length=3226bp|location=Sequence derived from alignment at sc0000782:996..4221+ (Clytia hemisphaerica)
TTCAGGGGAGCTGACGTGACCATCCCGAACGGGCAAAAATTGACACCACT
CATCATTGCTGTCAAATGCAACCGTGTGGAAAACATTGCAGTTCTGATGA
GTTGCAAAGTGGCTCAGAATGAAGATAGTGATGATGGTGAGGATGAAGAA
GATGAAACTACTAGTGAAAAAGGTACATacagaccatgttcagacgttac
ggtttcgtatagctccggtatgattttcgttacggatcgagagtgttcat
acTGATtttggaacgtttcggagcagtTCTGTTCAGATGAAGATAGTGGA
ATGAAACTGATTGgatctgttttgcttttgtaacgtcttcattttttgac
GATTCAAATTTTCACATTCGCACAgtgtttgttcttttaaaagaaaaaag
ttaccTTTGTTTGTTGTAGATAAAACTGACGAAGCAAACACACCAATGAA
ACCTAAGATCAACATCAACGCTAAAGACAAGAAAACATTCACTGCTCTTC
ATCATGCAGCTAAACGTGGATTTAACGTATGTAGCAAGTTATTAACAACC
TCGTCCgatgttttatttactttgcttGTTGACACACAGACCTGTAAAAC
TCGAACggctagatggcgtgcttttACTGAAAATTGTGCCGTGGTTCGGT
AGGAAGTTACTACCGAGGTTACGcgatattacaatagaatttccaatcag
aagcttcgcggcttatcaaaaaacattttatttgcgatattcacttattt
ttgcttggCAAAGCTTGAAGCACtccttctagcccttcgggctttacaga
aatctcgGGTTGACTTCGAATTAGACAATTCCAGAGTTGGAAAGAGTCGA
TAGAGTCGATTTTTTACTTAGATATACAAATTTCAATTGCTTTCCCGGGT
TCCACGGCCAGGTCGCTCAGCTACTTTAATGGGATAAACTTTCGCGGGGA
TTAAATTTCACGGATTTCGCGGAAATGGGTGTCATCCGCGAAAATCTACG
AAATTATATCCCAATGGAAATTTGGAAGGGTATCATCCGCGAAATATTTC
TAAACAAAACTCAAAATAATATCAAATACTTACTTTTTCAATGGCTACTT
GCATCAAAGAAGCGCAAATAATGCGTATTTCAACAACCAACATGCATTAT
TTGACAGTAAAAGTCACAAAATCGTGAAAATATTGCCACCCAATAGTGCC
AGCCGCGAAATTAAGTCCCTGCGAAATTTTATCCCGTTAAAGTATCTTTG
AACTGTACGGAACATTCAGTCCAATGCAACAATATTATTGCCAAGATCAT
AAATTTCCTATCTTTTTTACTTTTTATCTTCTCTTAGGACTGCATTAAGG
TATTGCTGGAACACAATGCTAATGTCAATATCAAATCAAGTGCTGTTCAA
GAGAATATGACACCACTTGGTTTGGCTGCAGCAAAAGGACATTACGAAAC
AGTCAAATTCCTCCATGAAAATGGTGCTAAACCTGACCTGAAAAGTATAT
AAATTTTTCTTCCTGAAAATAGAATTTGTCTAAATCCTTTGATCATATAT
GTTCTTTTTAATTTGAAATGCAATAATGTTGTGTGGGAAACCTTTTTACA
ATATACTGGTTTACCGAATTTAAAAGAATTTTGATTTTCCAAAACCTATA
AATGGGCTTTTCCAGAAAAGATTTGAATATGGTGGGGGGTTTTGGATAAC
ATTTTTTGGAAATTTCCCCCCCCCCCAGACAGCAGGTCTAACCCCCTGGA
CTTGCATTTGTTAACCCATGGTCAACAATTACCCTCAAACAGACAAGTTT
ACCCCCGGACAGGGCAAATTTTGTAGATTTTCCACTAACCCCCCTCCCGg
acactatatcctccagccccatgtacggacattttccgGAAGAGCCCAAT
ATTCTTGttaactttgatttttcaaaacttataaaatattattaacttaC
TAAATATTAATGTTAGCTAAAATGACTCAGACGattatttttaaatatat
tcattgatattcatgacgtaatgtgttctacggaaataccccggttttag
ccagtagtgacaaatttaaaaagaagacaaacgttgtataaaatttgcca
ctattggcaaaaaccggggtctttccgtagaaaacatcacgtcatgaata
tcataaatATCCTATTCTCTACTGAAAAACATTTAGCGAACTTTAATTAT
TTCCTTATCTCTAAAGTGCGCCGAAATAAGACAGCCCTTATGTATGCATG
TATGAACGGACACAGTCAAATCGTGGCTTACCTCTTACGCATCGGCGTTA
ACCCGGATGCGCGAGATAGCTCTGACAACACGCCGATACATTATGCGGCC
GCTTACGGATGGTATCATTGTGTCAAGTTATTGTTAGAGGGTGGTGCCGA
TGCAAACATACCAAATAATTGGAAGGTAATgcataacttttaatttaatC
GGAATTGAATAATAGACTCCGCTCAAAATCTTGAGTTGTTTATAGTATAG
TAAGCAGATATtgaataggtaaaagttggttattgagatttattaacccg
agtaTTTGATGTAATATTCATCAAGATACATGatgaattttatgaaaatg
tctatattattctttccaaaaacgaAACCTGTTTTTTAATACAGTNTTAT
GAAAATGTCTCTattattctttccaaaaacgaAATTTGCCATGCTTttta
atacagttgacgctctctaattcgacgtctactattcgataggctccttt
attcgatgaaatttaaagtccccgtcagcaagaaactctcataaacgacg
ctcccttattatATAAACTCCCTTATTCGATCGAAACCAAATTTCCctcg
aaaatcgaattagagatgGGCAACTGTATCTCAAAAACaataatatatta
ttttttactccttttatattttcattctaGACAACACCTTTAGCAGTTGC
GTTAATGAAACATTACATTGAAATCGGTGATTTATTGTTAGACGCTGGTG
TTGATGTGAATTTTGTTGACGAGAACGGATTGACGATCCTGATGAAACAT
TTAACTGGAACGCTGTGTAAAGAACAATACACACTTGTCAAACATCTGCT
AGAGAAATATCACGCCAATCCTCAATTGACAGATGGCTCAAGTTCTAATC
TGGTAAGTGAcggaccgtagtgcagtggtaaaGCATCctgctacggtgcg
caaggttgtgggttcaacccccagcc

Coding sequence (CDS) from alignment at sc0000782:996..4221+

>TCONS_00030004 ID=TCONS_00030004|Name=TCONS_00030004|organism=Clytia hemisphaerica|type=CDS|length=4425bp|location=Sequence derived from alignment at sc0000782:996..4221+ (Clytia hemisphaerica)
TTCAGGGGAGCTGACGTGACCATCCCGAACGGGCAAAAATTGACACCACT
CATCATTGCTGTCAAATGCAACCGTGTGGAAAACATTGCAGTTCTGATGA
GTTGCAAAGTGGCTCAGAATGAAGATAGTGATGATGGTGAGGATGAAGAA
GATGAAACTACTAGTGAAAAAGATAAAACTGACGAAGCAAACACACCAAT
GAAACCTAAGATCAACATCAACGCTAAAGACAAGAAAACATTCACTGCTC
TTCATCATGCAGCTAAACGTGGATTTAACGACTGCATTAAGGTATTGCTG
GAACACAATGCTAATGTCAATATCAAATCAAGTGCTGTTCAAGAGAATAT
GACACCACTTGGTTTGGCTGCAGCAAAAGGACATTACGAAACAGTCAAAT
TCCTCCATGAAAATGGTGCTAAACCTGACCTGAAAATGCGCCGAAATAAG
ACAGCCCTTATGTATGCATGTATGAACGGACACAGTCAAATCGTGGCTTA
CCTCTTACGCATCGGCGTTAACCCGGATGCGCGAGATAGCTCTGACAACA
CGCCGATACATTATGCGGCCGCTTACGGATGGTATCATTGTGTCAAGTTA
TTGTTAGAGGGTGGTGCCGATGCAAACATACCAAATAATTGGAAGACAAC
ACCTTTAGCAGTTGCGTTAATGAAACATTACATTGAAATCGGTGATTTAT
TGTTAGACGCTGGTGTTGATGTGAATTTTGTTGACGAGAACGGATTGACG
ATCCTGATGAAACATTTAACTGGAACGCTGTGTAAAGAACAATACACACT
TGTCAAACATCTGCTAGAGAAATATCACGCCAATCCTCAATTGACAGATG
GCTCAAGTTCTAATCTGGTAAGTGAcggaccgtagTTCAGGGGAGCTGAC
GTGACCATCCCGAACGGGCAAAAATTGACACCACTCATCATTGCTGTCAA
ATGCAACCGTGTGGAAAACATTGCAGTTCTGATGAGTTGCAAAGTGGCTC
AGAATGAAGATAGTGATGATGGTGAGGATGAAGAAGATGAAACTACTAGT
GAAAAAGATAAAACTGACGAAGCAAACACACCAATGAAACCTAAGATCAA
CATCAACGCTAAAGACAAGAAAACATTCACTGCTCTTCATCATGCAGCTA
AACGTGGATTTAACGACTGCATTAAGGTATTGCTGGAACACAATGCTAAT
GTCAATATCAAATCAAGTGCTGTTCAAGAGAATATGACACCACTTGGTTT
GGCTGCAGCAAAAGGACATTACGAAACAGTCAAATTCCTCCATGAAAATG
GTGCTAAACCTGACCTGAAAATGCGCCGAAATAAGACAGCCCTTATGTAT
GCATGTATGAACGGACACAGTCAAATCGTGGCTTACCTCTTACGCATCGG
CGTTAACCCGGATGCGCGAGATAGCTCTGACAACACGCCGATACATTATG
CGGCCGCTTACGGATGGTATCATTGTGTCAAGTTATTGTTAGAGGGTGGT
GCCGATGCAAACATACCAAATAATTGGAAGACAACACCTTTAGCAGTTGC
GTTAATGAAACATTACATTGAAATCGGTGATTTATTGTTAGACGCTGGTG
TTGATGTGAATTTTGTTGACGAGAACGGATTGACGATCCTGATGAAACAT
TTAACTGGAACGCTGTGTAAAGAACAATACACACTTGTCAAACATCTGCT
AGAGAAATATCACGCCAATCCTCAATTGACAGATGGCTCAAGTTCTAATC
TGGTAAGTGAcggaccgtagTTCAGGGGAGCTGACGTGACCATCCCGAAC
GGGCAAAAATTGACACCACTCATCATTGCTGTCAAATGCAACCGTGTGGA
AAACATTGCAGTTCTGATGAGTTGCAAAGTGGCTCAGAATGAAGATAGTG
ATGATGGTGAGGATGAAGAAGATGAAACTACTAGTGAAAAAGATAAAACT
GACGAAGCAAACACACCAATGAAACCTAAGATCAACATCAACGCTAAAGA
CAAGAAAACATTCACTGCTCTTCATCATGCAGCTAAACGTGGATTTAACG
ACTGCATTAAGGTATTGCTGGAACACAATGCTAATGTCAATATCAAATCA
AGTGCTGTTCAAGAGAATATGACACCACTTGGTTTGGCTGCAGCAAAAGG
ACATTACGAAACAGTCAAATTCCTCCATGAAAATGGTGCTAAACCTGACC
TGAAAATGCGCCGAAATAAGACAGCCCTTATGTATGCATGTATGAACGGA
CACAGTCAAATCGTGGCTTACCTCTTACGCATCGGCGTTAACCCGGATGC
GCGAGATAGCTCTGACAACACGCCGATACATTATGCGGCCGCTTACGGAT
GGTATCATTGTGTCAAGTTATTGTTAGAGGGTGGTGCCGATGCAAACATA
CCAAATAATTGGAAGACAACACCTTTAGCAGTTGCGTTAATGAAACATTA
CATTGAAATCGGTGATTTATTGTTAGACGCTGGTGTTGATGTGAATTTTG
TTGACGAGAACGGATTGACGATCCTGATGAAACATTTAACTGGAACGCTG
TGTAAAGAACAATACACACTTGTCAAACATCTGCTAGAGAAATATCACGC
CAATCCTCAATTGACAGATGGCTCAAGTTCTAATCTGGTAAGTGAcggac
cgtagTTCAGGGGAGCTGACGTGACCATCCCGAACGGGCAAAAATTGACA
CCACTCATCATTGCTGTCAAATGCAACCGTGTGGAAAACATTGCAGTTCT
GATGAGTTGCAAAGTGGCTCAGAATGAAGATAGTGATGATGGTGAGGATG
AAGAAGATGAAACTACTAGTGAAAAAGATAAAACTGACGAAGCAAACACA
CCAATGAAACCTAAGATCAACATCAACGCTAAAGACAAGAAAACATTCAC
TGCTCTTCATCATGCAGCTAAACGTGGATTTAACGACTGCATTAAGGTAT
TGCTGGAACACAATGCTAATGTCAATATCAAATCAAGTGCTGTTCAAGAG
AATATGACACCACTTGGTTTGGCTGCAGCAAAAGGACATTACGAAACAGT
CAAATTCCTCCATGAAAATGGTGCTAAACCTGACCTGAAAATGCGCCGAA
ATAAGACAGCCCTTATGTATGCATGTATGAACGGACACAGTCAAATCGTG
GCTTACCTCTTACGCATCGGCGTTAACCCGGATGCGCGAGATAGCTCTGA
CAACACGCCGATACATTATGCGGCCGCTTACGGATGGTATCATTGTGTCA
AGTTATTGTTAGAGGGTGGTGCCGATGCAAACATACCAAATAATTGGAAG
ACAACACCTTTAGCAGTTGCGTTAATGAAACATTACATTGAAATCGGTGA
TTTATTGTTAGACGCTGGTGTTGATGTGAATTTTGTTGACGAGAACGGAT
TGACGATCCTGATGAAACATTTAACTGGAACGCTGTGTAAAGAACAATAC
ACACTTGTCAAACATCTGCTAGAGAAATATCACGCCAATCCTCAATTGAC
AGATGGCTCAAGTTCTAATCTGGTAAGTGAcggaccgtagTTCAGGGGAG
CTGACGTGACCATCCCGAACGGGCAAAAATTGACACCACTCATCATTGCT
GTCAAATGCAACCGTGTGGAAAACATTGCAGTTCTGATGAGTTGCAAAGT
GGCTCAGAATGAAGATAGTGATGATGGTGAGGATGAAGAAGATGAAACTA
CTAGTGAAAAAGATAAAACTGACGAAGCAAACACACCAATGAAACCTAAG
ATCAACATCAACGCTAAAGACAAGAAAACATTCACTGCTCTTCATCATGC
AGCTAAACGTGGATTTAACGACTGCATTAAGGTATTGCTGGAACACAATG
CTAATGTCAATATCAAATCAAGTGCTGTTCAAGAGAATATGACACCACTT
GGTTTGGCTGCAGCAAAAGGACATTACGAAACAGTCAAATTCCTCCATGA
AAATGGTGCTAAACCTGACCTGAAAATGCGCCGAAATAAGACAGCCCTTA
TGTATGCATGTATGAACGGACACAGTCAAATCGTGGCTTACCTCTTACGC
ATCGGCGTTAACCCGGATGCGCGAGATAGCTCTGACAACACGCCGATACA
TTATGCGGCCGCTTACGGATGGTATCATTGTGTCAAGTTATTGTTAGAGG
GTGGTGCCGATGCAAACATACCAAATAATTGGAAGACAACACCTTTAGCA
GTTGCGTTAATGAAACATTACATTGAAATCGGTGATTTATTGTTAGACGC
TGGTGTTGATGTGAATTTTGTTGACGAGAACGGATTGACGATCCTGATGA
AACATTTAACTGGAACGCTGTGTAAAGAACAATACACACTTGTCAAACAT
CTGCTAGAGAAATATCACGCCAATCCTCAATTGACAGATGGCTCAAGTTC
TAATCTGGTAAGTGAcggaccgtag

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_017156	XLOC_017156	Clytia hemisphaerica	gene

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00030004-protein	TCONS_00030004-protein	Clytia hemisphaerica	polypeptide

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000782	supercontig	sc0000782:996..4221 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.40456	3.01944	4.10695	2.68263	5.90828	5.49458	8.51773	9.51564	4.6316	7.6816	8.98501	5.26802	5.43983	7.40522	3.55797	7.50666	4.10889	4.56784	5.8694	5.98235	3.95099	4.03759	2.16224	2.95873	4.35813	5.53379	2.72429	2.8328	3.56795	2.29138

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR002110	Ankyrin_rpt
IPR020683	Ankyrin_rpt-contain_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding

Blast

[Close]

BLAST of TCONS_00030004 vs. Swiss-Prot (Human)
Match: ANS1B (Ankyrin repeat and sterile alpha motif domain-containing protein 1B OS=Homo sapiens GN=ANKS1B PE=1 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 1.086e-22
Identity = 65/180 (36.11%), Postives = 96/180 (53.33%), Query Frame = 1

Query:  214 NINAKDKKTFTALHHAAKRGFNDCIKVLLEHNANVNIKSSAVQENMTPLGLAAAKGHYETVKFLHENG---AKPDLKMRRNKTALMYACMNGHSQIVAYLLRIGVNPDARDSSDNTPIHYAAAYGWYHCVKLLLEGGADANIPNNWKTTPLAVALMKHYIEIGDLLLDAGVDVNFVDENG 744
            N+N  D   +TALHHAA  G  D +  LL++ A+ N+   A  +   P+ LAA KG  E VK L  +G   ++ + +   N+TAL  A   GHS++VA LL    +P  R+S   TP+  AA YG    VK+++    +    N  K TPL +A    +  +  +LL+AG+DV+   E G
Sbjct:   51 NVNCTDSSGYTALHHAALNGHKDIVLKLLQYEASTNV---ADNKGYFPIHLAAWKGDVEIVKILIHHGPSHSRVNEQNNENETALHCAAQYGHSEVVAVLLEELTDPTIRNSKLETPLDLAALYGRLRVVKMIISAHPNLMSCNTRKHTPLHLAARNGHKAVVQVLLEAGMDVSCQTEKG 227

The following BLAST results are available for this feature:

BLAST of TCONS_00030004 vs. Swiss-Prot (Human)

BLAST of TCONS_00030004 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
ANS1B	1.086e-22	36.11	Ankyrin repeat and sterile alpha motif domain-cont...	[more]

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TCONS_00030004 (transcript) - C. hemisphaerica