TCONS_00030002 (transcript) - C. hemisphaerica

Overview
NameTCONS_00030002
Unique NameTCONS_00030002
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length266

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00030002 ID=TCONS_00030002|Name=TCONS_00030002|organism=Clytia hemisphaerica|type=transcript|length=266bp
GTTCTCCAGTGGTCAAGATAGGATGAATTACAACAATTCTTCTCTCgccg
tttcttctttttcttttttatttcagttttcattttttaagggACCACAA
TTGCGATCATATCCAGGTGAGACgtgtattttccacattttccaaCGTTG
TAGTAATATCATAATGATACACATTCATTGGCGAGGGCGAGAATATGATG
GAAACCCTCTGGAGAATACCCTTGTGTCAGAGATCCGGTGGAGCCTCCCG
CCCCACTAGAAAACTT
Run BLAST on NCBI

transcript from alignment at sc0000781:127437..127702

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00030002 ID=TCONS_00030002|Name=TCONS_00030002|organism=Clytia hemisphaerica|type=transcript|length=266bp|location=Sequence derived from alignment at sc0000781:127437..127702 (Clytia hemisphaerica)
AAGTTTTCTAGTGGGGCGGGAGGCTCCACCGGATCTCTGACACAAGGGTA
TTCTCCAGAGGGTTTCCATCATATTCTCGCCCTCGCCAATGAATGTGTAT
CATTATGATATTACTACAACGttggaaaatgtggaaaatacacGTCTCAC
CTGGATATGATCGCAATTGTGGTcccttaaaaaatgaaaactgaaataaa
aaagaaaaagaagaaacggcGAGAGAAGAATTGTTGTAATTCATCCTATC
TTGACCACTGGAGAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_017154XLOC_017154Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00030002-exon-sc0000781-1491911889:127437..127702TCONS_00030002-exon-sc0000781-1491911889:127437..127702Clytia hemisphaericaexon
TCONS_00030002-exon-sc0000781-1510915933:127437..127702TCONS_00030002-exon-sc0000781-1510915933:127437..127702Clytia hemisphaericaexon
TCONS_00030002-exon-sc0000781-1575043694:127437..127702TCONS_00030002-exon-sc0000781-1575043694:127437..127702Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000781supercontigsc0000781:127437..127702 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0.639776	2.8723	9.23627	3.96932	2.10194	0.764339	2.39903	3.32987	2.0733	2.11505	0	4.96276	2.42752	0.6382	1.53483	3.71883	2.25848	0.894526	1.78871	5.15667	8.51917	1.1208	0	1.15272	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00030002 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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