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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00029994 ID=TCONS_00029994|Name=TCONS_00029994|organism=Clytia hemisphaerica|type=transcript|length=1542bp
AAAAGATTCAACAGCTTTTAAGCAGCTCGTAAATTGTTTCCACAAAGGAC
CACAACAAATGattggaaaaatcaaaacactgtACATTTCTTTCACAATT
AATActacaaatatatattttgacattttattttCACAGATTATCACGTG
ACCCTGATCACTTGACATTCAGCTCTCCAGAATACTCATCAAGTATCTCT
CCTGACCGTGGTGCACCGCTGAATCCTGGACACTTACCAGTCAACTCACC
TTGTTGCTCACCAGATGTTTCTCTCTACCAGGATCCATTGATTAATCCTG
ATCACTTAAGGATCAACTTTTCGGATCAATCGTCAAATAGTTCTCCCTAT
CGTGGTGCATCGTTCAACCCTGAAAACTTATCGATCAACTCTCCATATCA
CTCTCCCTACCAGGATACACCGATCAACCCCAATCACTTGGAAAGTGACT
CTCAACACGACCACTATCGTGGTGCATCGTTCAACCCTGAACACTTATCG
ATCAACTCTCCATATCACTCTCCCTACCAGGATACACCGATCAACCCCAA
TCACTTGGAAAGTGACTCTCAACACGACCACTTTGGTGCCTCTCCTTCCC
GTGATGACTCACTGGATGAGCCACTGCATATATCACTAATGGATTCCCCT
CCCCCTAATGACCAAGATAACCTTTTACCGAATGGGTGTCGCTCTTCATT
CTCTGTTAAGTCACAAAACCAGTTACCACCAGCACAAGGAGCTTGGTACA
ATGGAGTGAATGGACTTGTGGAAATTTCTGAAGACCATTTTACCTCTGCA
GACAATGACATCCTTGTACCATTTATTATGAACATTACAGAAAATTATCC
TGAGTTAGTTTCTGGAGTACCCCCGTCCCATGGCACCAAACTGGAACTGT
TACAAAAACTTACAAAGTTCATCAAAGTAGTACCAACGAATGTGAATACA
TTACAAGGGCTGAAAAGGGAACAATGGGAAGCATTGAAGTCACACGGAGA
CCATacaaaaatttgtcagatgATAGTTTGAAGAAGATTGTAGTGAGCAT
ATCCTCTTCTAATTCGCAATACAAACTTGTTTTCGTCAGGTACCGTTTTG
CTGGAGACCCACATACAATAAAGGTCAAGACACATGGTAACTCGAAACAT
CAAACAAACCCGTACCATAAAGTGTTTAAAAGCACCAAAGAACTACTATC
GAACGaattatttaaagaaaattcaattcaaagagCAGTGTTCAACGTCC
GGAAAACCGTTGGAGGGGAGAATCCTGATTCGATTGCGTCATTGCCAACA
GGGAAAGATCAGGCTTCGTACacaaagaagaaatcaaaagacgCAAATGT
GCATACTGACCCTTTGTACCAAATAACCCAAATCATGGCAAATTACAAGG
AGGGAGATGAGAGATTCATACGCTCTTACACAAATGATGATTATGTACCA
AAGATTATAGCTTTCACTGATCAACAGATGAAAGAAATTGgagtttggaa
actattctagtcgcgagttagggagttgctagtttcgagttg Run BLAST on NCBI protein sequence of TCONS_00029994-protein >TCONS_00029994-protein ID=TCONS_00029994-protein|Name=TCONS_00029994-protein|organism=Clytia hemisphaerica|type=polypeptide|length=178bp
MGSIEVTRRPYKNLSDDSLKKIVVSISSSNSQYKLVFVRYRFAGDPHTIK
VKTHGNSKHQTNPYHKVFKSTKELLSNELFKENSIQRAVFNVRKTVGGEN
PDSIASLPTGKDQASYTKKKSKDANVHTDPLYQITQIMANYKEGDERFIR
SYTNDDYVPKIIAFTDQQMKEIGVWKLF Run BLAST on NCBI transcript from alignment at sc0000781:91605..93486- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00029994 ID=TCONS_00029994|Name=TCONS_00029994|organism=Clytia hemisphaerica|type=transcript|length=1882bp|location=Sequence derived from alignment at sc0000781:91605..93486- (Clytia hemisphaerica)
AAAAGATTCAACAGCTTTTAAGCAGCTCGTAAATTGTTTCCACAAAGGAC
CACAACAAATGATTGGAAAAATCAAAACACTGTACATTTCTTTCACAATT
AATACTACAAATATATATTTTGACATTTTATTTTCACAGATTATCACGTG
ACCCTGATCACTTGACATTCAGCTCTCCAGAATACTCATCAAGTATCTCT
CCTGACCGTGGTGCACCGCTGAATCCTGGACACTTACCAGTCAACTCACC
TTGTTGCTCACCAGATGTTTCTCTCTACCAGGATCCATTGATTAATCCTG
ATCACTTAAGGATCAACTTTTCGGATCAATCGTCAAATAGTTCTCCCTAT
CGTGGTGCATCGTTCAACCCTGAAAACTTATCGATCAACTCTCCATATCA
CTCTCCCTACCAGGATACACCGATCAACCCCAATCACTTGGAAAGTGACT
CTCAACACGACCACTATCGTGGTGCATCGTTCAACCCTGAACACTTATCG
ATCAACTCTCCATATCACTCTCCCTACCAGGATACACCGATCAACCCCAA
TCACTTGGAAAGTGACTCTCAACACGACCACTTTGGTGCCTCTCCTTCCC
GTGATGACTCACTGGATGAGCCACTGCATATATCACTAATGGATTCCCCT
CCCCCTAATGACCAAGATAACCTTTTACCGAATGGGTGTCGCTCTTCATT
CTCTGTTAAGTCACAAAACCAGTTACCACCAGCACAAGGGTAAGCTGAAT
TATTTAATCAGGTTGAGCTCTAAGCATTTGTACAAAAATATAAAGAGAAA
AATATATGACTAACAGTCCTTTCCGTAGGTGTATAAAACACTGAAATCCA
TAGATGAACAAAAGTCCTTGAAGACCAGTGAAGACATCAAGTTTAAAAAG
TTGAAACATGGATAACATCTTTTCACAATAATGTTATCACATAAATCAAT
TGTTTTACACTGTTTTTTTTCTTTATTTTTTTTAATGATATATTCATTCT
ATTAATAATTGCACTCCCAGTATTGAGATTAATATTAATTTCCATGACTT
AAAATTGATTATTCATTTAACCTTTTTAGAGCTTGGTACAATGGAGTGAA
TGGACTTGTGGAAATTTCTGAAGACCATTTTACCTCTGCAGACAATGACA
TCCTTGTACCATTTATTATGAACATTACAGAAAATTATCCTGAGTTAGTT
TCTGGAGTACCCCCGTCCCATGGCACCAAACTGGAACTGTTACAAAAACT
TACAAAGTTCATCAAAGTAGTACCAACGAATGTGAATACATTACAAGGGC
TGAAAAGGGAACAATGGGAAGCATTGAAGTCACACGGAGACCATACAAAA
ATTTGTCAGATGATAGTTTGAAGAAGATTGTAGTGAGCATATCCTCTTCT
AATTCGCAATACAAACTTGTTTTCGTCAGGTACCGTTTTGCTGGAGACCC
ACATACAATAAAGGTCAAGACACATGGTAACTCGAAACATCAAACAAACC
CGTACCATAAAGTGTTTAAAAGCACCAAAGAACTACTATCGAACGAATTA
TTTAAAGAAAATTCAATTCAAAGAGCAGTGTTCAACGTCCGGAAAACCGT
TGGAGGGGAGAATCCTGATTCGATTGCGTCATTGCCAACAGGGAAAGATC
AGGCTTCGTACACAAAGAAGAAATCAAAAGACGCAAATGTGCATACTGAC
CCTTTGTACCAAATAACCCAAATCATGGCAAATTACAAGGAGGGAGATGA
GAGATTCATACGCTCTTACACAAATGATGATTATGTACCAAAGATTATAG
CTTTCACTGATCAACAGATGAAAGAAATTGGAGTTTGGAAACTATTCTAG
TCGCGAGTTAGGGAGTTGCTAGTTTCGAGTTG Coding sequence (CDS) from alignment at sc0000781:91605..93486- >TCONS_00029994 ID=TCONS_00029994|Name=TCONS_00029994|organism=Clytia hemisphaerica|type=CDS|length=537bp|location=Sequence derived from alignment at sc0000781:91605..93486- (Clytia hemisphaerica)
ATGGGAAGCATTGAAGTCACACGGAGACCATACAAAAATTTGTCAGATGA
TAGTTTGAAGAAGATTGTAGTGAGCATATCCTCTTCTAATTCGCAATACA
AACTTGTTTTCGTCAGGTACCGTTTTGCTGGAGACCCACATACAATAAAG
GTCAAGACACATGGTAACTCGAAACATCAAACAAACCCGTACCATAAAGT
GTTTAAAAGCACCAAAGAACTACTATCGAACGAATTATTTAAAGAAAATT
CAATTCAAAGAGCAGTGTTCAACGTCCGGAAAACCGTTGGAGGGGAGAAT
CCTGATTCGATTGCGTCATTGCCAACAGGGAAAGATCAGGCTTCGTACAC
AAAGAAGAAATCAAAAGACGCAAATGTGCATACTGACCCTTTGTACCAAA
TAACCCAAATCATGGCAAATTACAAGGAGGGAGATGAGAGATTCATACGC
TCTTACACAAATGATGATTATGTACCAAAGATTATAGCTTTCACTGATCA
ACAGATGAAAGAAATTGGAGTTTGGAAACTATTCTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00029994-exon-sc0000781-1575043694:92748..93486 | TCONS_00029994-exon-sc0000781-1575043694:92748..93486 | Clytia hemisphaerica | exon |
| TCONS_00029994-exon-sc0000781-1575043694:91605..92407 | TCONS_00029994-exon-sc0000781-1575043694:91605..92407 | Clytia hemisphaerica | exon |
| TCONS_00029994-exon-sc0000781-1510915933:92748..93486 | TCONS_00029994-exon-sc0000781-1510915933:92748..93486 | Clytia hemisphaerica | exon |
| TCONS_00029994-exon-sc0000781-1510915933:91605..92407 | TCONS_00029994-exon-sc0000781-1510915933:91605..92407 | Clytia hemisphaerica | exon |
| TCONS_00029994-exon-sc0000781-1491911889:92748..93486 | TCONS_00029994-exon-sc0000781-1491911889:92748..93486 | Clytia hemisphaerica | exon |
| TCONS_00029994-exon-sc0000781-1491911889:91605..92407 | TCONS_00029994-exon-sc0000781-1491911889:91605..92407 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000781 | supercontig | sc0000781:91605..93486 - |
Blast
The following BLAST results are available for this feature:
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