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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00029988 ID=TCONS_00029988|Name=TCONS_00029988|organism=Clytia hemisphaerica|type=transcript|length=1639bp
CCTGATATCATTGATGCGGCTTACCATTACGTCATGAAACAAACGATAGA
ATTTTTGCAAACACCGTTGTTGTGTACAGGACTCTGTCCACACATAGCTG
TTGCCTCGGACAAGTCTACCCCTGGTCGCGAGACAAATCACGCCATAATG
ATCATCATACCATTTAACGGCAAACGCATTCCGATGCCTATCGATGCTCC
TTTGGTTTACGAGATGAACGATGAAAACAATTTAGAAGGTGGAAGTGGAG
AAGATCTAGCTTACCAAATTACAGATGTTCTGAAAAAGAGGCTTAAGATC
GACGAAGAAAAAATTCATTACATCAGAGCATTCCATGCTGATGGACAATA
CCAATGCGATACGTTTCAAAGCAGGTTCAAGTCTAACTTCCAATCGCCAG
TCAAGGAAATTGATCCGTTTGTTCTATTACCGTGGGATACATCACACTGG
ATGGACCTTGCTATGGAAAAACTGTATGAGGATAGCCTTTCTTCGAGCTT
CTtgaaacaATCCGCGGGCAAGATTTTGCTATCGACATCTGTGGCGCAGC
TGATGTTCTAAGACCAATCGTCTTGATGATGGTACGCTGCCAAGCAGTTG
ATTTACCTCTGTGGAAAGTACCGACCTGGTTTCACAGAATGATCCGTCAG
CTTGAGTCAACAGCAGAAGAAGTGAAGAAGAGGGAAGGATTCTGCTCTTC
ACTCAACTTGACCTACCTTggtgaaaattggaaatctttgACCGCGAACG
AAAAGAACAAGAGGAGTGAAAAGTTGGGGACATTCAAGAATGTAGATGTA
ATTAAAGGCTGGTTAGTTACAGACAAAGGAACTGTCGAATCTGAAGCAGC
TGATACGAAGAAAACCAAGAAGAAACAATATACTTGGAAGTATCGGAGCT
CAGAAGAGTGTCTGTCGGATCTTGTCACTCTGGCAAAAGAAGCGAAAACC
CTAATATCAACGAGGTTCGATTCGTCAGTTGACCAAGAGGTTAAAGATCT
AGCCGTTATTTTTGATCTCGAAAATACGGTTCTCCTACTTAAAGATTTTA
AACGTGTGGGGAATAAGTTGAAAGCAAAGCGCAAAGATATCACAAAATTT
GAAACTAATGGTGCAAAGGAGTTCGAAAGTTTTTACAAACACGTTTGTCA
ACTACCTCAAGTAGAAAGCATGTACGAAAAGGACTCTAATCTTGATTTGC
TCCCACATCATGCCTCaagtgttttgaaaaaataccgATCCAGTATAAAA
TCCATGGTATTTGAGACCCACACAAAAGATCTATTCACTACACCGAAAGG
AGAGAAGTTGAAGAATGTTTCCCAGTCACAGTTGGTCGAAATTAAGCCGT
CAAAGGAACGAGATTTGACCCAGCTTTTTACTTTAACCTTTGAAAACGGA
ATATCTGAGGAAGCCATCGTTGCCGAAAGCAAGTTTGCTGAGTTGCTATA
TACAAACGAGGCTGTTTATACTTCTTTTGGAAAGGAAGTCCGCATTGCCT
TGGACGTTGCCCTCAGATCAGGTGGCTGTGAAGCTATAGTCGAGGGTTTC
TATAGCTTGGtcaaaagaaacataaaaagaACGGTCGTCAAAGAAATAAA
ACTCTAACTCAAAGAGCTATAGTGGATTGGTGTTTGCCC Run BLAST on NCBI transcript from alignment at sc0000781:32244..35034+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00029988 ID=TCONS_00029988|Name=TCONS_00029988|organism=Clytia hemisphaerica|type=transcript|length=2791bp|location=Sequence derived from alignment at sc0000781:32244..35034+ (Clytia hemisphaerica)
CCTGATATCATTGATGCGGCTTACCATTACGTCATGAAACAAACGATAGA
ATTTTTGCAAACACCGTTGTTGTGTACAGGACTCTGTCCACACATAGCTG
TTGCCTCGGACAAGTCTACCCCTGGTCGCGAGACAAATCACGCCATAATG
ATCATCATACCATTTAACGGCAAACGCATTCCGATGCCTATCGATGCTCC
TTTGGTTTACGAGATGAACGATGAAAACAATTTAGAAGGTGGAAGTGGAG
AAGATCTAGCTTACCAAATTACAGATGTTCTGAAAAAGAGGCTTAAGATC
GACGAAGAAAAAATTCATTACATCAGAGGTTAGTAATTATTACGTTCTTC
ATTTGATTTTGAGGTGAAAGTCTCTTGAAAAAGAAAGTCATGGAAGAGGC
TGGGAtcttaaattcttaattttagCTTTCCCATTGGGTTTCTGCATTAT
CCCTCGACTgaattttggttgtttgttaGAAGAGTCACCAGTAAATTTGT
CAGTAAAGTAAATTCATTTCTTTTAAAGCATTCCATGCTGATGGACAATA
CCAATGCGATACGTTTCAAAGCAGGTTCAAGTCTAACTTCCAATCGCCAG
TCAAGGAAATTGATCCGTTTGTTCTATTACCGTGGGATACATCACACTGG
ATGGACCTTGCTATGGAAAAACTGTATGAGGATAGCCTTTCTTCGAGCTT
CTtgaaacagttagtcacacggGCCAATCGTTTTAATACAATGTTTCGAC
ATGGGAAAGGGCACGAGGAATACAAGGGGTTAGCAGATTCACTTGGTTTG
AAGTCGTTAGAGGTTGTTGGGTATTCAACTACAAGGTTTTTCTCCTCCTC
ATATGAACAGTGGGATAAAATCTATCATTCTTACCCGGCACTcatcgaaa
cttataaaaagtTCAGAGAACAAGGTGATAATTGCGACGAAACAAGATAC
CAGGTAGGTTGACCCGATTTTATTACATACTTCAAATAATTCAGTCAGTA
TATCATGGCTCGTAAAAATGGTTGTTCTTCAAGAATGATTTCACATTCct
cttttgaaaatgtgataAGTATAATGAAATAATTTGTATTAATTATGTTC
AATTTCTTACTACGGATTGTTTGTGTGATGGTCATTTGTTTTCTCTTATT
CAGATCCGCGGGCAAGATTTTGCTATCGACATCTGTGGCGCAGCTGATGT
TCTAAGACCAATCGTCTTGATGATGGTACGCTGCCAAGCAGTTGATTTAC
CTCTGTGGAAAGTACCGACCTGGTTTCACAGAATGATCCGTCAGCTTGAG
TCAACAGCAGAAGAAGTGAAGAAGAGGGAAGGATTCTGCTCTTCACTCAA
CTTGACCTACCTTggtgaaaattggaaatctttgACCGCGAACGAAAAGA
ACAAGAGGAGTGAAAAGTTGGGGACATTCAAGAATGTAGATGTAATTAAA
GGCTGGTTAGTTACAGACAAAGGAACTGTCGAATCTGAAGCAGGTGATGA
TTCTCTCTATATAATAATAGCCTTACGTGTCTGAAGCCTTTTTAGCAGCG
TTTTtgttttcgctagcgatttaaACTCGCACGGGACTTTTATTAGGGGG
TATTGTTTCATTTAAAAGTAACAGTTTTCTTCCTGTTTTATTCGAAATAC
AAACAGTGGAATCCCCCGGTTGAAAATCATTAGCACGTCACTGAAGTAat
tgcaaaaaagaaaaaaattggattactgaaaagaaatgaaaatgtcTTTG
GCGAAGATTAAGATACTTATTTtggtatatttttaaaaaattattgtcTT
CAATGAAGCTAATGAAATAGTGAAAAGTCGTCTGTGATGACGTCTGGGAC
ACCTAGtatttattatattatatattctACTTCTAATATCGATGGATATT
TTGTGTTGTAACAAAAAATGGTAAGAAATTGTTTAGTTCTAGAGTACATA
GATAAAAGTATTGAATGGTTTATATTTGAACTTGTATAAATTTCGTTATA
GCTGATACGAAGAAAACCAAGAAGAAACAATATACTTGGAAGTATCGGAG
CTCAGAAGAGTGTCTGTCGGATCTTGTCACTCTGGCAAAAGAAGCGAAAA
CCCTAATATCAACGAGGTTCGATTCGTCAGTTGACCAAGAGGTTAAAGAT
CTAGCCGTTATTTTTGATCTCGAAAATACGGTTCTCCTACTTAAAGATTT
TAAACGTGTGGGGAATAAGTTGAAAGCAAAGCGCAAAGATATCACAAAAT
TTGAAACTAATGGTGCAAAGGAGTTCGAAAGTTTTTACAAACACGTTTGT
CAACTACCTCAAGTAGAAAGCATGTACGAAAAGGACTCTAATCTTGATTT
GCTCCCACATCATGCCTCaagtgttttgaaaaaataccgATCCAGTATAA
AATCCATGGTATTTGAGACCCACACAAAAGATCTATTCACTACACCGAAA
GGAGAGAAGTTGAAGAATGTTTCCCAGTCACAGTTGGTCGAAATTAAGCC
GTCAAAGGAACGAGATTTGACCCAGCTTTTTACTTTAACCTTTGAAAACG
GAATATCTGAGGAAGCCATCGTTGCCGAAAGCAAGTTTGCTGAGTTGCTA
TATACAAACGAGGCTGTTTATACTTCTTTTGGAAAGGAAGTCCGCATTGC
CTTGGACGTTGCCCTCAGATCAGGTGGCTGTGAAGCTATAGTCGAGGGTT
TCTATAGCTTGGtcaaaagaaacataaaaagaACGGTCGTCAAAGAAATA
AAACTCTAACTCAAAGAGCTATAGTGGATTGGTGTTTGCCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00029988-exon-sc0000781-1491911889:32244..32571 | TCONS_00029988-exon-sc0000781-1491911889:32244..32571 | Clytia hemisphaerica | exon |
| TCONS_00029988-exon-sc0000781-1510915933:32244..32571 | TCONS_00029988-exon-sc0000781-1510915933:32244..32571 | Clytia hemisphaerica | exon |
| TCONS_00029988-exon-sc0000781-1575043694:32244..32571 | TCONS_00029988-exon-sc0000781-1575043694:32244..32571 | Clytia hemisphaerica | exon |
| TCONS_00029988-exon-sc0000781-1491911889:32772..32952 | TCONS_00029988-exon-sc0000781-1491911889:32772..32952 | Clytia hemisphaerica | exon |
| TCONS_00029988-exon-sc0000781-1510915933:32772..32952 | TCONS_00029988-exon-sc0000781-1510915933:32772..32952 | Clytia hemisphaerica | exon |
| TCONS_00029988-exon-sc0000781-1575043694:32772..32952 | TCONS_00029988-exon-sc0000781-1575043694:32772..32952 | Clytia hemisphaerica | exon |
| TCONS_00029988-exon-sc0000781-1491911889:33397..33736 | TCONS_00029988-exon-sc0000781-1491911889:33397..33736 | Clytia hemisphaerica | exon |
| TCONS_00029988-exon-sc0000781-1510915933:33397..33736 | TCONS_00029988-exon-sc0000781-1510915933:33397..33736 | Clytia hemisphaerica | exon |
| TCONS_00029988-exon-sc0000781-1575043694:33397..33736 | TCONS_00029988-exon-sc0000781-1575043694:33397..33736 | Clytia hemisphaerica | exon |
| TCONS_00029988-exon-sc0000781-1491911889:34245..35034 | TCONS_00029988-exon-sc0000781-1491911889:34245..35034 | Clytia hemisphaerica | exon |
| TCONS_00029988-exon-sc0000781-1510915933:34245..35034 | TCONS_00029988-exon-sc0000781-1510915933:34245..35034 | Clytia hemisphaerica | exon |
| TCONS_00029988-exon-sc0000781-1575043694:34245..35034 | TCONS_00029988-exon-sc0000781-1575043694:34245..35034 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000781 | supercontig | sc0000781:32244..35034 + |
Blast
The following BLAST results are available for this feature:
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