TCONS_00029982 (transcript) - C. hemisphaerica

Overview
NameTCONS_00029982
Unique NameTCONS_00029982
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length390

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00029982 ID=TCONS_00029982|Name=TCONS_00029982|organism=Clytia hemisphaerica|type=transcript|length=390bp
TCCGTGATTTCATTGTTGCATAGATGACGGATGACTAAGGATAGAGCGGT
TCTCATATTTCGTCCTGCTTCTCCAAAGCTTCTTGATGTGAGAATATGGC
GCCAACCATCAGCATCTAGCCCCGAAGGACCCGATCCGCCTTTGGTTAGC
TGGGCTGCTTTGTAGATAAGATTTTCATCAATCATCTCGAAGTCAACCGG
TTCTACTTGTAGAAGTGGACCTTGGAGGATAGCGGATTCGTCTGCTGGTT
CCGCACGTGGATGCTTTACTCGAAGCTGTTTGATGGTGTTGTCGTCCAAT
GGGAGTACACCTCCACGCATGTTGGTGGTTAGTAACTTGATTGCTCCATT
GACGTTGCCTTTTTGCATCAGGTCTCGAAACTTTTGTGAG
Run BLAST on NCBI

protein sequence of TCONS_00029982-protein

>TCONS_00029982-protein ID=TCONS_00029982-protein|Name=TCONS_00029982-protein|organism=Clytia hemisphaerica|type=polypeptide|length=129bp
SQKFRDLMQKGNVNGAIKLLTTNMRGGVLPLDDNTIKQLRVKHPRAEPAD
ESAILQGPLLQVEPVDFEMIDENLIYKAAQLTKGGSGPSGLDADGWRHIL
TSRSFGEAGRNMRTALSLVIRHLCNNEIT
Run BLAST on NCBI

transcript from alignment at sc0000780:128846..129235

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00029982 ID=TCONS_00029982|Name=TCONS_00029982|organism=Clytia hemisphaerica|type=transcript|length=390bp|location=Sequence derived from alignment at sc0000780:128846..129235 (Clytia hemisphaerica)
CTCACAAAAGTTTCGAGACCTGATGCAAAAAGGCAACGTCAATGGAGCAA
TCAAGTTACTAACCACCAACATGCGTGGAGGTGTACTCCCATTGGACGAC
AACACCATCAAACAGCTTCGAGTAAAGCATCCACGTGCGGAACCAGCAGA
CGAATCCGCTATCCTCCAAGGTCCACTTCTACAAGTAGAACCGGTTGACT
TCGAGATGATTGATGAAAATCTTATCTACAAAGCAGCCCAGCTAACCAAA
GGCGGATCGGGTCCTTCGGGGCTAGATGCTGATGGTTGGCGCCATATTCT
CACATCAAGAAGCTTTGGAGAAGCAGGACGAAATATGAGAACCGCTCTAT
CCTTAGTCATCCGTCATCTATGCAACAATGAAATCACGGA

Coding sequence (CDS) from alignment at sc0000780:128846..129235

>TCONS_00029982 ID=TCONS_00029982|Name=TCONS_00029982|organism=Clytia hemisphaerica|type=CDS|length=387bp|location=Sequence derived from alignment at sc0000780:128846..129235 (Clytia hemisphaerica)
TCACAAAAGTTTCGAGACCTGATGCAAAAAGGCAACGTCAATGGAGCAAT
CAAGTTACTAACCACCAACATGCGTGGAGGTGTACTCCCATTGGACGACA
ACACCATCAAACAGCTTCGAGTAAAGCATCCACGTGCGGAACCAGCAGAC
GAATCCGCTATCCTCCAAGGTCCACTTCTACAAGTAGAACCGGTTGACTT
CGAGATGATTGATGAAAATCTTATCTACAAAGCAGCCCAGCTAACCAAAG
GCGGATCGGGTCCTTCGGGGCTAGATGCTGATGGTTGGCGCCATATTCTC
ACATCAAGAAGCTTTGGAGAAGCAGGACGAAATATGAGAACCGCTCTATC
CTTAGTCATCCGTCATCTATGCAACAATGAAATCACG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_017137XLOC_017137Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00029982-proteinTCONS_00029982-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00029982-exon-sc0000780-1491911889:128846..129235TCONS_00029982-exon-sc0000780-1491911889:128846..129235Clytia hemisphaericaexon
TCONS_00029982-exon-sc0000780-1510915933:128846..129235TCONS_00029982-exon-sc0000780-1510915933:128846..129235Clytia hemisphaericaexon
TCONS_00029982-exon-sc0000780-1575043694:128846..129235TCONS_00029982-exon-sc0000780-1575043694:128846..129235Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000780supercontigsc0000780:128846..129235 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.19601	0	0.665796	0	0	0	0	0	0.176961	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.279588	0.29039
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00029982 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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