TCONS_00029900 (transcript) - C. hemisphaerica

Overview
NameTCONS_00029900
Unique NameTCONS_00029900
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length4101

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00029900 ID=TCONS_00029900|Name=TCONS_00029900|organism=Clytia hemisphaerica|type=transcript|length=4101bp
ATGCCTGGCAAATTTAAAGCAGTTACATACAACTAGGCTATATATATTCT
tacttttctttatttctttctaaaaaaaagaGGTTAAGTGCAACCAAAAC
ATAAATCACTAACtttcacaatgagcagtagaaTGACTCGAGCAAACAAC
ACTGAATCAAGGATATATGTTGGCAATCTTCCGGATGATATTCGAACGCG
TGAACTAGAAGATGTTTTCAGCAAGTTTGGAAGAGTTGCTgatattgaaa
ttaaaattccaAAGTCTGGTAGAGCCCCTGCTTTTGCATTTATCCAATAT
GAAGACCCAAGAGATGCTGATGATGCCATCCGAGCTAAAGATGGATCTAA
TTTTGACGGACAAACGTTGCGTGTTGAATTACCCAGTCCAAAAGGCTCAT
CTCGTCGGGGTGGTTATGATGGTGGCCGTGGTGGCGGTCGAATGGGTGGT
GGTGGATACTCAGGGCGTCCACCTATGTCAGgTGGACGTGGAGGACGCGG
AGCACCACCACAGCGTTCAGACTATCGAATCATGATTTCTGGATTACCCA
CATCTGGTAGTTGGCAAGACATTAAAGACCATTGTAGGGATGCAGGAGAA
GTAGTATATGCTGACGTGTTCAGAGATGGTACTGGTATTGTTGAATTTGC
TCGACGTAGTGACATGGAATGGGCTGTCGATAACTTGGATGATACTTCTT
TTAGATCACACGAGGGTGAATCATCTCGCGTTCGATTCCGTGTCGATGGA
AACGCCCGAGGGCGTTCAAGATCTCGTTCACCCCGTAGGGGCGGAGATAG
AGGCGACAGAGGCGGTGATCGAGGAGACAGAGGCGGTTATTATCGTTAGA
CGGACTTCCGTTGAATATACTGTGATTGTTGAACTGAATTGTGCTACAAA
ATGGTTTAAAAGTCTCTAGGTTTGGATGATTTTGATCTTCCCCATAAATA
GCTGGTTTTGATGTCTGGATTTTAaccttttaattttacttttctctgat
tttttccCTACAATCTGGCAACTCGGGCTTCTAAATGTGCAGTAATGCAT
AGTTTTCTAGAACTAAAAGACATTGAGTTCTTCCTCATTTAGTATAAAGC
CTCGTTTCCACGTCTTTACTTCTCTTAGTTTATCATTTCTTTTACCTCAG
GAAAACCAAAGTAtaaatgtaaatattttttccaaGGCTTTGCTAGcttg
tttttaacattagttttatttatactgagacgatgaatttgtctgagacg
agcaatttagaaaatgagcattatggaggagtgtactttccattcatgtt
tcaataaataggatctcctccacagatcacactttacaaactactcgtct
atgacgatttttccgtctcagtataGATGGAATTATTGAGAGATAAAGAG
ACTGGgtcgaactttttttaaagaatattttactGACTATCTTTATTTCA
TGTATTCATAGGTTTGTTTTTGGATCGACCGTGATCGTTATGTGATTTCG
GACGAATTTCGGACAGGAATTCGGACGCTTCAGAATAAACGAGAACGGCC
CGATTCAATTTTCTGCTACCCCGATCATAGCATTTCAGACATATTTCGGT
CACGGCGAAAGCCATTCAGGAGTCGGACGCATCAGAAAAAAGTGATTTTA
CATAACGTTTCGGACACAATATCGGATGCTTCATTTAACAAAGCGCCTTA
AAATGCATTCAATATTCAGGAAACAGGGGAGATTTAACAAACTTCAGGAG
TTTAGGTACACCAGGAAAACGAATCACTTGTCAAATGAATCAGGGGGAAA
CATAAACGTCGCACCATCCTAATATAACGAAAACAGCCTGATTCAATTCC
GATCATAGCGAAAGCCTTTCTTTCCAAAGTTGGAcgcatcagaaaaaaca
acaagaccGCCTCGATTCTTATTTTGCGACCAGATCATAACATTTCGGAC
GTAATATCGGATGcttcaaaaataaaacacattAAAATACGTTTAAAAGT
TCAGGGAAACAGGGGAGATGTACAATCAGGAGTTATGGTGCTTCAGGGGA
AACGGGAAGTCGCTCTCGGCAAGTTAACAAAAGTTGCTCATTCACTAATC
CAGTTCTCTATCGGTATCAATTCGTAGAAAAGTTAGGAACATGAAAAGGT
TTTTGTTCCATTTTCGTCACCGGGTCACTTGTCAAATGCTTCAGGGAAAC
AAAACATTAACGTCGCACCATCCTAATATAACAAAAACGGCCTGATTCAA
TTCCGATCATAGTGAAAGTCTTTCTTACAGGATTTGGACGCACCAGAAAA
AAACGAAACCAGCTCGATTGTTATTTCGCGATCGGACCATAACGTTTCGG
ACGAGGTGTGGGATACTTCAAAACAAAACGCTTTAAAAAAACGTAGAATT
CAGGGAAACACGGGGAGATATTACAATCATGAGTATGGGGGCACTTCAGG
AAAAACGGGAACGGATAAAAGGCAAGCAAGTAACGGAATCAATTCGTAGA
AAAGTAAGGAACATGGAAAAGGTTTTACTCCAAAACATTAACGTCGCGCT
ACCCTAATATGACGAGAACGGCCTGCTTCAAATTTGAGATCAGACATAAC
GGACATGATTTCTATCAAAGCGAGATTCCTTCAGGAATTTTAAGCTTCGG
AAAAACGAGAACGACCTGTTTCAGTTTTCGCGACCCCATTATAACAATTT
ATGTGATTCCGGTCGAAGCAAGCCACTCTGTTTACAGGAATTGAACGCAT
CAAGAACCATAACGACCCGATTCTTATTTTACGACCGGTCACAGTGAAAG
CCTTACAGGATCGGTTCAAGACACCCTATGCGTAACATTTCGGTCACAAC
AGGAAAATGAAAGTAGCTCATTCATCTATCAAATGTGCCACCACCAGTGT
CACGTCGAAAATTTGGGAAGACGAAAGGGGGTTGGTTCCATTACAACCAA
ATTTTATTTGAGAATCGGGAAATACGGCTCAAACATTACGTGGGGTAGCC
GGAATCAGATGCTTCGGGGAAAAGGGAAGAAAAAACAACCCCCTGCAGCG
ACCGTGTAGGAACGTCTCAGGAATAATTTCAGATGCAAGCAATTCTTGTT
ATGGCGGTCGAAGAAAATCCGTACAGAACACAAAAACGCAAAATCACTCA
TCGAATAGTCAATATATCATAAAGGAAATCTCACAATGGTCAGAAATCGA
TTTAATTGTTACGAACTGGTCGTAAAATTTACGGCACACTAGCGATTGGA
ACAGGAAAGCAATAACTCACACCTTAACTAAAAGGGCCGGGAAAAGTTGT
CACCGTTGCAAACAGGAATTTAGACGCAACATAAACACGAAAATAAtctg
tttcttctttttacGAGTCACAGATGATTCTGGAAATGAATTGAAGTACT
GATTATGACCGACACGACCGTCAGGGGAATAGGCCTAGTCGATCTTTTGG
CTCAATCAGAAAAGAGCTTACAATTCCGATGTCGATCCAAACGATAAGTC
CTAGATTAACAAGTCTTTTCTCAATCCTACTTTCAATGCATAAGAATGGT
AGGAATAAGCAGAATGGGGAAAGGATTGTAACCTGGCCTTATGCAATTAC
ACATTGAGAGCGGCCTGGTCGATACGTCTTCAACTCAGTCTGAATGTCAA
TGCTTAGGTATTTACTGGCACTGTCATACATAGGAATGTGGAATTACTTG
GAAAACGAAACAGCCTTAGATATGTTCGATTTTTAATCCTTTCGCAAAGA
TGGAGCATGAATCAGGAACTAATCAAACGgaatcaaatttgattttaaca
aaTCGTTGTTTAGCCAAGAATTCCATTAGGAGTCGTTAATAACATGCTTT
GCTATTTAAAACTCTTAGCAAACAAAAGTTCAACATACAcatgttttgat
gaaaatttcagATGCATCGGAGAAATTTAAATACTCGCTTGCGAACTCCA
CTTCGAATACTATTGACATTATAGAATTTTCGAGCAACATAGGTTGAAAC
ATTGCAACCGTTACAATGCCAAATAAGTTGATTTTACTGACCTAAAGCAT
TTATTCCATGGAGGAGGAGGGTAAAATCAAAAGCAGTTCGTCTAGTCACC
G
Run BLAST on NCBI

transcript from alignment at sc0000777:47264..53651+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00029900 ID=TCONS_00029900|Name=TCONS_00029900|organism=Clytia hemisphaerica|type=transcript|length=6388bp|location=Sequence derived from alignment at sc0000777:47264..53651+ (Clytia hemisphaerica)
ATGCCTGGCAAATTTAAAGCAGTTACATACAACTAGGCTATATATATTCT tacttttctttatttctttctaaaaaaaagaGGTTAAGTGCAACCAAAAC ATAAATCACTAACtttcacaatgagcagtagaaTGACTCGAGCAAACAAC ACTGAATCAAGGATATATGTTGGCAATCTTCCGGATGATATTCGAACGCG TGAACTAGAAGATGTTTTCAGCAAGTTTGGAAGAGTTGCTgatattgaaa ttaaaattccaAAGTCTGGTAGAGCCCCTGCTTTTGCATTTATCCAATAT GAAGACCCAAGGTAATGGAAAGTTTTGTCTACTTGTAGTGATGTAATGAG GTATATCTAATGCCTGAGTACCAGCTGGTGTGTGCAAATCTTAAAGAAGG TTTTTGGTGGAAGTTTCTTTACAGTCCTGTCTCTGTAAAGGGTTCCCcct gaagaatatttttcttgGAATTTACTTCTTGCTTTTATCAGAAGAAAACA GCacaatttttgaattctttACAACAACAACCAACAAAGATTTACTTCTT CtatcaaaaatttccatttgTTTACCAATCGTTTTCAACATCCTCTAATG ATAATATTCATCTTCATTACAGAGATGCTGATGATGCCATCCGAGCTAAA GATGGATCTAATTTTGACGGACAAACGTTGCGTGTTGAATTACCCAGTCC AAAAGGCTCATCTCGTCGGGGTGGTTATGATGGTGGCCGTGGTGGCGGTC GAATGGGTGGTGGTGGATACTCAGGGCGTCCACCTATGTCAGGTTAGTCA TGAACCATTAAGTCCACTCTTTCTTGATGTTATGAACATCTTAAAATGAT GGCAGTCATTATGAGTAAACATCAATAGCAATTCGTCCTGATTGTTTAAT TCGAAACCAACCCATGTATTAAGTTCTCACTTGACAAAtgaattcatata aatattttgcaggTGGACGTGGAGGACGCGGAGCACCACCACAGCGTTCA GACTATCGAATCATGATTTCTGGATTACCCACATCTGGTAGTTGGCAAGA CATTAAAGACCATTGTAGGGATGCAGGTAGGATCATCAATCATGAGAAGA GGGTCCTTATGAAAAAATTCTGgcctggaagcttattgttttaacttttt gttagctttttcctttgttattatCAAAGGCCGAAAATcaatttgctcag tttttgatcacgttaccaagaattcctcttgggattggtttacgATTtat taatcacatgatcaaaaagtgagcaaaacaaactgatttatcaacgcaag ttcaagtgaGAAagaaaaggcttccagaccgggaTTTTTTATATGCCTCA TTTCTGTTGAAGGATTACCTTGCTATTATCGAGGATGGTCACCTTGTCAC TTGTTTGATGAGCAAATAAGTGGATTCGAATCCTACCTAAGAGATTCTAC TCCAGCTTTTGGCTATACCTTTTAGTGGTTCATGCTCAAAGTAGTTTTAT CTGAAAGGTTGTCAGAATTGTTCAGTTTTATTAtttggctcttccagaaa atgttcttACATCGGGAGTGGAGGATAGAGTGTCCGGGGGTAGTAAACTA ATGCTTGACCGGGATGTTAGACCTACTgtctggggggggggttaaaaggC ACAATGTCTTGGgggtaaatttaaaaaaaatgtcatatcatccatccacc ccccatattcaatttttttctggaaaagaccATTCtcatattttgtattt tctttgattCACAGGAGAAGTAGTATATGCTGACGTGTTCAGAGATGGTA CTGGTATTGTTGAATTTGCTCGACGTAGTGACATGGAATGGGCTGTCGAT AACTTGGATGATACTTCTTTTAGATCACACGAGGTAAATATTCGAGCCAT TCCTTTTTATAACCATAGAGGggtggacgaacttttccagggggtaaact gagaagaatttccaggaggTCTAACGAAGTGTTTTTCATgtttccagggg gggggggtaaaaagcTAGTCTTAAACTTCCAGGGGGTAAACGACTGAGGG TCGTCCAACCTCACTttaagagatgaaaataatattttccagggtctttt ttgcaaattttgctattttccagAGGGTATCCAAACATTTCCAAGCAAtt tgttttgacttgaaaaagttcgtccccccccccccccctgtatggaaatt ttttggaaCAGCCCATTGGCTTCtctatttatctttttttttgctatttt attgtTTCTTCCAAAGTTTGCGGGCTCTGGTTTGACTCTCTAGCAATGCC AGTCATGAACAGCTCCaacaaaaactgattttgatgaaaatccatGAAAA TTTGTCTATGTTTTGTACGTAGAATGGAAATGAGTGAATCGACAAACTAA CTCTTTCAGGAatttttttggttctttttggtcttttttcgttctttttg gTCCTTTTTGGTCATAAGTTCAGCCTACTTATCATTCATCCTTCAGTCAA GTTAATAGCTTCTAGCAAATGATTAAGCCTGATTACTATTTTGATAAatg attttatagaaaattactttttgcaaactttttgaaaattcctttgTTAT TCATTTTCAGGGTGAATCATCTCGCGTTCGATTCCGTGTCGATGGAAACG CCCGAGGGCGTTCAAGATCTCGTTCACCCCGTAGGGGCGGAGATAGAGGC GACAGAGGCGACAGAGGTGGTGACAGAGGTGGTGACCGAGGCGGTGATCG AGGCGGTGATCGAGGAGACAGAGGCGGTTATTATCGTTAGACGGACTTCC GTTGAATATACTGTGATTGTTGAACTGAATTGTGCTACAAAATGGTTTAA AAGTCTCTAGGTTTGGATGATTTTGATCTTCCCCATAAATAGCTGGTTTT GATGTCTGGATTTTAaccttttaattttacttttctctgattttttccCT ACAATCTGGCAACTCGGGCTTCTAAATGTGCAGTAATGCATAGTTTTCTA GAACTAAAAGACATTGAGTTCTTCCTCATTTAGTATAAAGCCTCGTTTCC ACGTCTTTACTTCTCTTAGTTTATCATTTCTTTTACCTCAGGAAAACCAA AGTAtaaatgtaaatattttttccaaGGCTTTGCTAGcttgtttttaaca ttagttttatttatactgagacgatgaatttgtctgagacgagcaattta gaaaatgagcattatggaggagtgtactttccattcatgtttcaataaat aggatctcctccacagatcacactttacaaactactcgtctatgacgatt tttccgtctcagtataGATGGAATTATTGAGAGATAAAGAGACTGGgtcg aactttttttaaagaatattttactGACTATCTTTATTTCATGTATTCAT AGGTTTGTTTTTGGATCGACCGTGATCGTTATGTGATTTCGGACGAATTT CGGACAGGAATTCGGACGCTTCAGAATAAACGAGAACGGCCCGATTCAAT TTTCTGCTACCCCGATCATAGCATTTCAGACATATTTCGGTCACGGCGAA AGCCATTCAGGAGTCGGACGCATCAGAAAAAAGTGATTTTACATAACGTT TCGGACACAATATCGGATGCTTCATTTAACAAAGCGCCTTAAAATGCATT CAATATTCAGGAAACAGGGGAGATTTAACAAACTTCAGGAGTTTAGGTAC ACCAGGAAAACGAATCACTTGTCAAATGAATCAGGGGGAAACATAAACGT CGCACCATCCTAATATAACGAAAACAGCCTGATTCAATTCCGATCATAGC GAAAGCCTTTCTTTCCAAAGTTGGAcgcatcagaaaaaacaacaagaccG CCTCGATTCTTATTTTGCGACCAGATCATAACATTTCGGACGTAATATCG GATGcttcaaaaataaaacacaTTAAAATTCAGGGAAACTCGGGGACGGA TTAGTCAAGTGTTAAGGAACATGGAGAGGGTTTTATTTCGTCACCTGATT ACTTGTCAAATGCACATCAGGGAAACAAAACGTCGCACAACTCTTACTTA CGAGAATGACCTGATTCAATTTTTGCGATCAAATCATAAGATCTCGAACA TGNTAGTTACGAGAATGGCCTGATTCAATTTTTGCGATCAAATCATAAGA TTTCGAACATCATTTCGGTCACGACAAAAGCCTTACTTATGAGTTGGACG CATCAGAAAAAAACGAGACATCATAACGTTCCGGACGTAATATCGGATgc ttcaaaaaacaaaacacattAAAATACGTTTAAAAGTTCAGGGAAACAGG GGAGATGTACAATCAGGAGTTATGGTGCTTCAGGGGAAACGGGAAGTCGC TCTCGGCAAGTTAACAAAAGTTGCTCATTCACTAATCCAGTTCTCTATCG GTATCAATTCGTAGAAAAGTTAGGAACATGAAAAGGTTTTTGTTCCATTT TCGTCACCGGGTCACTTGTCAAATGCTTCAGGGAAACAAAACATTAACGT CGCACCATCCTAATATAACAAAAACGGCCTGATTCAATTCCGATCATAGT GAAAGTCTTTCTTACAGGATTTGGACGCACCAGAAAAAAACGAAACCAGC TCGATTGTTATTTCGCGATCGGACCATAACGTTTCGGACGAGGTGTGGGA TACTTCAAAACAAAACGCTTTAAAAAAACGTAGAATTCAGGGAAACACGG GGAGATATTACAATCATGAGTATGGGGGCACTTCAGGAAAAACGGGAACG GATAAAAGGCAAGCAAGTAACGGAATCAATTCGTAGAAAAGTAAGGAACA TGGAAAAGGTTTTACTCCAAAACATTAACGTCGCGCTACCCTAATATGAC GAGAACGGCCTGCTTCAAATTTGAGATCAGACATAACGGACATGATTTCT ATCAAAGCGAGATTCCTTCAGGAATTTTAAGCTTCGGAAAAACGAGAACG ACCTGTTTCAGTTTTCGCGACCCCATTATAACAATTTATGTGATTCCGGT CGAAGCAAGCCACTCTGTTTACAGGAATTGAACGCATCAAGAACCATAAC GACCCGATTCTTATTTTACGACCGGTCACAGTGAAAGCCTTACAGGATCG GTTCAAGACACCCTATGCGTAACATTTCGGTCACAACAGGAAAATGAAAG TAGCTCATTCATCTATCAAATGTGCCACCACCAGTGTCACGTCGAAAATT TGGGAAGACGAAAGGGGGTTGGTTCCATTACAACCAAATTTTATTTGAGA ATCGGGAAATACGGCTCAAACATTACGTGGGGTAGCCGGAATCAGATGCT TCGGGGAAAAGGGAAGAAAAAACAACCCCCTGCAGCGACCGTGTAGGAAC GTCTCAGGAATAATTTCAGATGCAAGCAATTCTTGTTATGGCGGTCGAAG AAAATCCGTACAGAACACAAAAACGCAAAATCACTCATCGAATAGTCAAT ATATCATAAAGGAAATCTCACAATGGTCAGAAATCGATTTAATTGTTACG AACTGGTCGTAAAATTTACGGCACACTAGCGATTGGAACAGGAAAGCAAT AACTCACACCTTAACTAAAAGGGCCGGGAAAAGTTGTCACCGTTGCAAAC AGGAATTTAGACGCAACATAAACACGAAAATAAtctgtttcttcttttta cGAGTCACAGATGATTCTGGAAATGAATTGAAGTACTGATTATGACCGAC ACGACCGTCAGGGGAATAGGCCTAGTCGATCTTTTGGCTCAATCAGAAAA GAGCTTACAATTCCGATGTCGATCCAAACGATAAGTCCTAGATTAACAAG TCTTTTCTCAATCCTACTTTCAATGCATAAGAATGGTAGGAATAAGCAGA ATGGGGAAAGGATTGTAACCTGGCCTTATGCAATTACACATTGAGAGCGG CCTGGTCGATACGTCTTCAACTCAGTCTGAATGTCAATGCTTAGGTATTT ACTGGCACTGTCATACATAGGAATGTGGAATTACTTGGAAAACGAAACAG CCTTAGATATGTTCGATTTTTAATCCTTTCGCAAAGATGGAGCATGAATC AGGAACTAATCAAACGgaatcaaatttgattttaacaaaTCGTTGTTTAG CCAAGAATTCCATTAGGAGTCGTTAATAACATGCTTTGCTATTTAAAACT CTTAGCAAACAAAAGTTCAACATACAcatgttttgatgaaaatttcagAT GCATCGGAGAAATTTAAATACTCGCTTGCGAACTCCACTTCGAATACTAT TGACATTATAGAATTTTCGAGCAACATAGGTTGAAACATTGCAACCGTTA CAATGCCAAATAAGTTGATTTTACTGACCTAAAGCATTTATTCCATGGAG GAGGAGGGTAAAATCAAAAGCAGTTCGTCTAGTCACCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_017091XLOC_017091Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00029900-exon-sc0000777-1491911889:47264..47574TCONS_00029900-exon-sc0000777-1491911889:47264..47574Clytia hemisphaericaexon
TCONS_00029900-exon-sc0000777-1510915933:47264..47574TCONS_00029900-exon-sc0000777-1510915933:47264..47574Clytia hemisphaericaexon
TCONS_00029900-exon-sc0000777-1575043694:47264..47574TCONS_00029900-exon-sc0000777-1575043694:47264..47574Clytia hemisphaericaexon
TCONS_00029900-exon-sc0000777-1491911889:47886..48055TCONS_00029900-exon-sc0000777-1491911889:47886..48055Clytia hemisphaericaexon
TCONS_00029900-exon-sc0000777-1510915933:47886..48055TCONS_00029900-exon-sc0000777-1510915933:47886..48055Clytia hemisphaericaexon
TCONS_00029900-exon-sc0000777-1575043694:47886..48055TCONS_00029900-exon-sc0000777-1575043694:47886..48055Clytia hemisphaericaexon
TCONS_00029900-exon-sc0000777-1491911889:48226..48339TCONS_00029900-exon-sc0000777-1491911889:48226..48339Clytia hemisphaericaexon
TCONS_00029900-exon-sc0000777-1510915933:48226..48339TCONS_00029900-exon-sc0000777-1510915933:48226..48339Clytia hemisphaericaexon
TCONS_00029900-exon-sc0000777-1575043694:48226..48339TCONS_00029900-exon-sc0000777-1575043694:48226..48339Clytia hemisphaericaexon
TCONS_00029900-exon-sc0000777-1491911889:49028..49146TCONS_00029900-exon-sc0000777-1491911889:49028..49146Clytia hemisphaericaexon
TCONS_00029900-exon-sc0000777-1510915933:49028..49146TCONS_00029900-exon-sc0000777-1510915933:49028..49146Clytia hemisphaericaexon
TCONS_00029900-exon-sc0000777-1575043694:49028..49146TCONS_00029900-exon-sc0000777-1575043694:49028..49146Clytia hemisphaericaexon
TCONS_00029900-exon-sc0000777-1491911889:49874..49970TCONS_00029900-exon-sc0000777-1491911889:49874..49970Clytia hemisphaericaexon
TCONS_00029900-exon-sc0000777-1510915933:49874..49970TCONS_00029900-exon-sc0000777-1510915933:49874..49970Clytia hemisphaericaexon
TCONS_00029900-exon-sc0000777-1575043694:49874..49970TCONS_00029900-exon-sc0000777-1575043694:49874..49970Clytia hemisphaericaexon
TCONS_00029900-exon-sc0000777-1491911889:50016..51184TCONS_00029900-exon-sc0000777-1491911889:50016..51184Clytia hemisphaericaexon
TCONS_00029900-exon-sc0000777-1510915933:50016..51184TCONS_00029900-exon-sc0000777-1510915933:50016..51184Clytia hemisphaericaexon
TCONS_00029900-exon-sc0000777-1575043694:50016..51184TCONS_00029900-exon-sc0000777-1575043694:50016..51184Clytia hemisphaericaexon
TCONS_00029900-exon-sc0000777-1491911889:51531..53651TCONS_00029900-exon-sc0000777-1491911889:51531..53651Clytia hemisphaericaexon
TCONS_00029900-exon-sc0000777-1510915933:51531..53651TCONS_00029900-exon-sc0000777-1510915933:51531..53651Clytia hemisphaericaexon
TCONS_00029900-exon-sc0000777-1575043694:51531..53651TCONS_00029900-exon-sc0000777-1575043694:51531..53651Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000777supercontigsc0000777:47264..53651 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
33.3463 29.6516 65.5675 69.8898 22.3632 13.4306 10.6248 9.22041 20.3732 23.0527 21.6081 23.2267 20.0576 17.6695 19.3271 16.9519 20.4059 21.0244 5.10471 5.55153 21.1301 21.3537 18.8719 15.9349 23.1654 24.2894 16.3836 14.9649 10.8388 11.4595
Blast
BLAST of TCONS_00029900 vs. Swiss-Prot (Human)
Match: SRSF1 (Serine/arginine-rich splicing factor 1 OS=Homo sapiens GN=SRSF1 PE=1 SV=2)

HSP 1 Score: 190.66 bits (483), Expect = 1.376e-53
Identity = 105/203 (51.72%), Postives = 139/203 (68.47%), Query Frame = 1
Query:  142 ANNTESRIYVGNLPDDIRTRELEDVFSKFGRVADIEIKIPKSGRAPAFAFIQYEDPRDADDAIRAKDGSNFDGQTLRVELPSPKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPPQRSDYRIMISGLPTSGSWQDIKDHCRDAGEVVYADVFRDGTGIVEFARRSDMEWAVDNLDDTSFRSHEGESSRVRFRVDG 750
            A N + RIYVGNLP DIRT+++EDVF K+G + DI++K  + G  P FAF+++EDPRDA+DA+  +DG ++DG  LRVE P                 GR  G G  G       RG  G P +RS+ R+++SGLP SGSWQD+KDH R+AG+V YADV+RDGTG+VEF R+ DM +AV  LD+T FRSHEGE++ +R +VDG
Sbjct:   11 AGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGG--PPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPR---------------SGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDG 196          
The following BLAST results are available for this feature:
BLAST of TCONS_00029900 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SRSF11.376e-5351.72Serine/arginine-rich splicing factor 1 OS=Homo sap... [more]
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