TCONS_00029898 (transcript) - C. hemisphaerica

Overview
NameTCONS_00029898
Unique NameTCONS_00029898
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length333

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00029898 ID=TCONS_00029898|Name=TCONS_00029898|organism=Clytia hemisphaerica|type=transcript|length=333bp
gcaaaattatgaaaatggaGAATTCAACACGaaccaaaaagtcaaaaaca
tccaATGAGTGCTGAAAGTCGTGATTCAAGACAAAATGCAACTGAAAATG
AGCTCGAAATCACTTCCCAACACCAACAAAACCTACAGGAAGCCCTAAGA
AGGAGTAAAGAACAATTTGAAATCGAAACGGCATTCATGGAAAGTATAAA
AATAATCATGAGGGAAAGAAACTTTAAGGTGACAGATGTCACTCCAgatc
agtcaggacctcatttcactttatcgatattacgcaaacggcagtgtgcg
ctaaataatcttggtttcgctttcgatttcaag
Run BLAST on NCBI

transcript from alignment at sc0000777:39636..40515+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00029898 ID=TCONS_00029898|Name=TCONS_00029898|organism=Clytia hemisphaerica|type=transcript|length=880bp|location=Sequence derived from alignment at sc0000777:39636..40515+ (Clytia hemisphaerica)
gcaaaattatgaaaatggaGAATTCAACACGaaccaaaaagtcaaaaaca
tccaATGAGTGGtattatttttgattatttgcatttcattttggttttga
tttaatttcggGCATATGAATTACGTATCTTCTATATCAAATTAAAAGAA
GAGACTTTGATTTATCTCCTGGGAAAGAAATTACTCTTAAAGTTATGGAT
GTTCCTCAAGCTTCAAAACAAAGTCAGATCTTACTGGCGCATATTCAATC
TGTATCGCGGAGCTACTCTCAAATGGAAAAGATCCAGTGTGTTTAAAGGT
TAAAAAGGAAAGGGAGATTCTGGAAGGTATCGCTAGTTTCATGGAGTGTG
GGGAGCCTTTTAtcaatttatttgaaaaacGACAAAACATTCCTCGGGAA
AAGGTATGTTTTTCATGGTAAGAGCCACTGCATTGTTATTGTCTTGAGCC
TGATTACGGAGAGACCATGAAGGAATGTGAAAAGTTTCGAATCTGGTACC
ACGATGAATGTGAAAGATTAATATCAGATTCAGAGGGGAAAATCACATGC
AAAAGATGTAGTAGATTGAAGACGTCAAAAACAACCAACGATAAAGCTTT
TATTTTAGCTGAAAGTCGTGATTCAAGACAAAATGCAACTGAAAATGAGC
TCGAAATCACTTCCCAACACCAACAAAACCTACAGGAAGCCCTAAGAAGG
AGTAAAGAACAATTTGAAATCGAAACGGCATTCATGGAAAGTATAAAAAT
AATCATGAGGGAAAGAAACTTTAAGGTGACAGATGTCACTCCAgatcagt
caggacctcatttcactttatcgatattacgcaaacggcagtgtgcgcta
aataatcttggtttcgctttcgatttcaag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_017090XLOC_017090Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00029898-exon-sc0000777-1491911889:39636..39696TCONS_00029898-exon-sc0000777-1491911889:39636..39696Clytia hemisphaericaexon
TCONS_00029898-exon-sc0000777-1510915933:39636..39696TCONS_00029898-exon-sc0000777-1510915933:39636..39696Clytia hemisphaericaexon
TCONS_00029898-exon-sc0000777-1575043694:39636..39696TCONS_00029898-exon-sc0000777-1575043694:39636..39696Clytia hemisphaericaexon
TCONS_00029898-exon-sc0000777-1491911889:40244..40515TCONS_00029898-exon-sc0000777-1491911889:40244..40515Clytia hemisphaericaexon
TCONS_00029898-exon-sc0000777-1510915933:40244..40515TCONS_00029898-exon-sc0000777-1510915933:40244..40515Clytia hemisphaericaexon
TCONS_00029898-exon-sc0000777-1575043694:40244..40515TCONS_00029898-exon-sc0000777-1575043694:40244..40515Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000777supercontigsc0000777:39636..40515 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
8.69002	10.4203	13.3798	13.0205	8.0575	4.19781	7.40123	5.48849	4.25729	3.90689	4.30537	6.89356	5.1935	7.31652	4.88014	4.70323	8.63997	5.94379	8.39138	6.20078	5.75165	5.15941	3.12487	1.7866	7.93649	5.04741	5.05981	5.752	4.88152	3.57851
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00029898 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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