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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00029881 ID=TCONS_00029881|Name=TCONS_00029881|organism=Clytia hemisphaerica|type=transcript|length=1780bpRun BLAST on NCBI protein sequence of TCONS_00029881-protein >TCONS_00029881-protein ID=TCONS_00029881-protein|Name=TCONS_00029881-protein|organism=Clytia hemisphaerica|type=polypeptide|length=527bp QDQNASAESTKKVSKKDPIRNRERNEIIENKPIPDAPKPSSTSRYPKREGRun BLAST on NCBI transcript from alignment at sc0000774:151669..156204- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00029881 ID=TCONS_00029881|Name=TCONS_00029881|organism=Clytia hemisphaerica|type=transcript|length=4536bp|location=Sequence derived from alignment at sc0000774:151669..156204- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000774:151669..156204- >TCONS_00029881 ID=TCONS_00029881|Name=TCONS_00029881|organism=Clytia hemisphaerica|type=CDS|length=6336bp|location=Sequence derived from alignment at sc0000774:151669..156204- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00029881 vs. Swiss-Prot (Human)
Match: ZN235 (Zinc finger protein 235 OS=Homo sapiens GN=ZNF235 PE=2 SV=3) HSP 1 Score: 254.988 bits (650), Expect = 1.879e-74 Identity = 118/192 (61.46%), Postives = 141/192 (73.44%), Query Frame = 1
Query: 991 TGDKPYRCDISGKGFSRTGALQKHLRTHTGDKPYKCDICGKAFNQSSNLQNHLRTHTGDKPYKCDICGKAFNQSQNLQTHLRTHTGDKPYKCDICGKRFSLLQNLQTHLRTHTGDKPYKCDICGKGFSVSGSLQKHLRTHTGDKPYKCDICRKGFSQSGDLQKHLRTHTGDKPYRCVICGAAYCSSSALNNH 1566
TG+KPYRCD GKGFSR+ L H R HTG+KPYKC++CGK F Q S+LQ H R HTG+KPYKC CGK F+ S NL TH R HT +KPYKCD CGK FSL NL +H R HTG+KPYKC+ CGKGFS + S Q H R HTG+KP++C++C KGFSQS Q H R HTG+KPY+C +CG + S L+NH
Sbjct: 370 TGEKPYRCDSCGKGFSRSTDLNIHCRVHTGEKPYKCEVCGKGFTQRSHLQAHERIHTGEKPYKCGDCGKRFSCSSNLHTHQRVHTEEKPYKCDECGKCFSLSFNLHSHQRVHTGEKPYKCEECGKGFSSASSFQSHQRVHTGEKPFRCNVCGKGFSQSSYFQAHQRVHTGEKPYKCEVCGKRFNWSLNLHNH 561 HSP 2 Score: 244.588 bits (623), Expect = 9.321e-71 Identity = 110/192 (57.29%), Postives = 135/192 (70.31%), Query Frame = 1
Query: 991 TGDKPYRCDISGKGFSRTGALQKHLRTHTGDKPYKCDICGKAFNQSSNLQNHLRTHTGDKPYKCDICGKAFNQSQNLQTHLRTHTGDKPYKCDICGKRFSLLQNLQTHLRTHTGDKPYKCDICGKGFSVSGSLQKHLRTHTGDKPYKCDICRKGFSQSGDLQKHLRTHTGDKPYRCVICGAAYCSSSALNNH 1566
TG+KP+RC++ GKGFS++ Q H R HTG+KPYKC++CGK FN S NL NH R HTG+KPYKC+ CGK F+Q+ NLQ H HTG+KP+KCD C KRFS +LQ H R HTG+KPYKCD CGK FS +LQ H HTG+KP+KC+ C K FS S L H R HTG+KPY C CG + +S + H
Sbjct: 510 TGEKPFRCNVCGKGFSQSSYFQAHQRVHTGEKPYKCEVCGKRFNWSLNLHNHQRVHTGEKPYKCEECGKGFSQASNLQAHQSVHTGEKPFKCDACQKRFSQASHLQAHQRVHTGEKPYKCDTCGKAFSQRSNLQVHQIIHTGEKPFKCEECGKEFSWSAGLSAHQRVHTGEKPYTCQQCGKGFSQASHFHTH 701 HSP 3 Score: 244.202 bits (622), Expect = 1.247e-70 Identity = 110/201 (54.73%), Postives = 141/201 (70.15%), Query Frame = 1
Query: 964 NLVKSEIADTGDKPYRCDISGKGFSRTGALQKHLRTHTGDKPYKCDICGKAFNQSSNLQNHLRTHTGDKPYKCDICGKAFNQSQNLQTHLRTHTGDKPYKCDICGKRFSLLQNLQTHLRTHTGDKPYKCDICGKGFSVSGSLQKHLRTHTGDKPYKCDICRKGFSQSGDLQKHLRTHTGDKPYRCVICGAAYCSSSALNNH 1566
NL + T +KPY+CD GK FS + L H R HTG+KPYKC+ CGK F+ +S+ Q+H R HTG+KP++C++CGK F+QS Q H R HTG+KPYKC++CGKRF+ NL H R HTG+KPYKC+ CGKGFS + +LQ H HTG+KP+KCD C+K FSQ+ LQ H R HTG+KPY+C CG A+ S L H
Sbjct: 445 NLHTHQRVHTEEKPYKCDECGKCFSLSFNLHSHQRVHTGEKPYKCEECGKGFSSASSFQSHQRVHTGEKPFRCNVCGKGFSQSSYFQAHQRVHTGEKPYKCEVCGKRFNWSLNLHNHQRVHTGEKPYKCEECGKGFSQASNLQAHQSVHTGEKPFKCDACQKRFSQASHLQAHQRVHTGEKPYKCDTCGKAFSQRSNLQVH 645 HSP 4 Score: 243.817 bits (621), Expect = 1.809e-70 Identity = 111/201 (55.22%), Postives = 138/201 (68.66%), Query Frame = 1
Query: 964 NLVKSEIADTGDKPYRCDISGKGFSRTGALQKHLRTHTGDKPYKCDICGKAFNQSSNLQNHLRTHTGDKPYKCDICGKAFNQSQNLQTHLRTHTGDKPYKCDICGKRFSLLQNLQTHLRTHTGDKPYKCDICGKGFSVSGSLQKHLRTHTGDKPYKCDICRKGFSQSGDLQKHLRTHTGDKPYRCVICGAAYCSSSALNNH 1566
NL + TG+KPY+C+ GKGFS + Q H R HTG+KP++C++CGK F+QSS Q H R HTG+KPYKC++CGK FN S NL H R HTG+KPYKC+ CGK FS NLQ H HTG+KP+KCD C K FS + LQ H R HTG+KPYKCD C K FSQ +LQ H HTG+KP++C CG + S+ L+ H
Sbjct: 473 NLHSHQRVHTGEKPYKCEECGKGFSSASSFQSHQRVHTGEKPFRCNVCGKGFSQSSYFQAHQRVHTGEKPYKCEVCGKRFNWSLNLHNHQRVHTGEKPYKCEECGKGFSQASNLQAHQSVHTGEKPFKCDACQKRFSQASHLQAHQRVHTGEKPYKCDTCGKAFSQRSNLQVHQIIHTGEKPFKCEECGKEFSWSAGLSAH 673 HSP 5 Score: 241.506 bits (615), Expect = 1.254e-69 Identity = 111/201 (55.22%), Postives = 137/201 (68.16%), Query Frame = 1
Query: 964 NLVKSEIADTGDKPYRCDISGKGFSRTGALQKHLRTHTGDKPYKCDICGKAFNQSSNLQNHLRTHTGDKPYKCDICGKAFNQSQNLQTHLRTHTGDKPYKCDICGKRFSLLQNLQTHLRTHTGDKPYKCDICGKGFSVSGSLQKHLRTHTGDKPYKCDICRKGFSQSGDLQKHLRTHTGDKPYRCVICGAAYCSSSALNNH 1566
NL + TG+KPY C GK F+++ L HL HTG+KPY+CD CGK F++S++L H R HTG+KPYKC++CGK F Q +LQ H R HTG+KPYKC CGKRFS NL TH R HT +KPYKCD CGK FS+S +L H R HTG+KPYKC+ C KGFS + Q H R HTG+KP+RC +CG + SS H
Sbjct: 333 NLQTHQRVHTGEKPYTCHECGKSFNQSSHLYAHLPIHTGEKPYRCDSCGKGFSRSTDLNIHCRVHTGEKPYKCEVCGKGFTQRSHLQAHERIHTGEKPYKCGDCGKRFSCSSNLHTHQRVHTEEKPYKCDECGKCFSLSFNLHSHQRVHTGEKPYKCEECGKGFSSASSFQSHQRVHTGEKPFRCNVCGKGFSQSSYFQAH 533 HSP 6 Score: 238.424 bits (607), Expect = 2.067e-68 Identity = 108/192 (56.25%), Postives = 137/192 (71.35%), Query Frame = 1
Query: 991 TGDKPYRCDISGKGFSRTGALQKHLRTHTGDKPYKCDICGKAFNQSSNLQNHLRTHTGDKPYKCDICGKAFNQSQNLQTHLRTHTGDKPYKCDICGKRFSLLQNLQTHLRTHTGDKPYKCDICGKGFSVSGSLQKHLRTHTGDKPYKCDICRKGFSQSGDLQKHLRTHTGDKPYRCVICGAAYCSSSALNNH 1566
TG+KPY+C++ GKGF++ LQ H R HTG+KPYKC CGK F+ SSNL H R HT +KPYKCD CGK F+ S NL +H R HTG+KPYKC+ CGK FS + Q+H R HTG+KP++C++CGKGFS S Q H R HTG+KPYKC++C K F+ S +L H R HTG+KPY+C CG + +S L H
Sbjct: 398 TGEKPYKCEVCGKGFTQRSHLQAHERIHTGEKPYKCGDCGKRFSCSSNLHTHQRVHTEEKPYKCDECGKCFSLSFNLHSHQRVHTGEKPYKCEECGKGFSSASSFQSHQRVHTGEKPFRCNVCGKGFSQSSYFQAHQRVHTGEKPYKCEVCGKRFNWSLNLHNHQRVHTGEKPYKCEECGKGFSQASNLQAH 589 HSP 7 Score: 230.72 bits (587), Expect = 9.311e-66 Identity = 109/192 (56.77%), Postives = 134/192 (69.79%), Query Frame = 1
Query: 991 TGDKPYRCDISGKGFSRTGALQKHLRTHTGDKPYKCDICGKAFNQSSNLQNHLRTHTGDKPYKCDICGKAFNQSQNLQTHLRTHTGDKPYKCDICGKRFSLLQNLQTHLRTHTGDKPYKCDICGKGFSVSGSLQKHLRTHTGDKPYKCDICRKGFSQSGDLQKHLRTHTGDKPYRCVICGAAYCSSSALNNH 1566
TG K Y C GKGFS++ LQ H R HTG+KPY C CGK+FNQSS+L HL HTG+KPY+CD CGK F++S +L H R HTG+KPYKC++CGK F+ +LQ H R HTG+KPYKC CGK FS S +L H R HT +KPYKCD C K FS S +L H R HTG+KPY+C CG + S+S+ +H
Sbjct: 314 TGKKRYWCHECGKGFSQSSNLQTHQRVHTGEKPYTCHECGKSFNQSSHLYAHLPIHTGEKPYRCDSCGKGFSRSTDLNIHCRVHTGEKPYKCEVCGKGFTQRSHLQAHERIHTGEKPYKCGDCGKRFSCSSNLHTHQRVHTEEKPYKCDECGKCFSLSFNLHSHQRVHTGEKPYKCEECGKGFSSASSFQSH 505 HSP 8 Score: 228.409 bits (581), Expect = 6.806e-65 Identity = 105/192 (54.69%), Postives = 130/192 (67.71%), Query Frame = 1
Query: 991 TGDKPYRCDISGKGFSRTGALQKHLRTHTGDKPYKCDICGKAFNQSSNLQNHLRTHTGDKPYKCDICGKAFNQSQNLQTHLRTHTGDKPYKCDICGKRFSLLQNLQTHLRTHTGDKPYKCDICGKGFSVSGSLQKHLRTHTGDKPYKCDICRKGFSQSGDLQKHLRTHTGDKPYRCVICGAAYCSSSALNNH 1566
TG+KPY+C++ GK F+ + L H R HTG+KPYKC+ CGK F+Q+SNLQ H HTG+KP+KCD C K F+Q+ +LQ H R HTG+KPYKCD CGK FS NLQ H HTG+KP+KC+ CGK FS S L H R HTG+KPY C C KGFSQ+ H R HTG++PY C +C + S L H
Sbjct: 538 TGEKPYKCEVCGKRFNWSLNLHNHQRVHTGEKPYKCEECGKGFSQASNLQAHQSVHTGEKPFKCDACQKRFSQASHLQAHQRVHTGEKPYKCDTCGKAFSQRSNLQVHQIIHTGEKPFKCEECGKEFSWSAGLSAHQRVHTGEKPYTCQQCGKGFSQASHFHTHQRVHTGERPYICDVCCKGFSQRSHLIYH 729 HSP 9 Score: 226.868 bits (577), Expect = 2.362e-64 Identity = 104/205 (50.73%), Postives = 138/205 (67.32%), Query Frame = 1
Query: 952 IKKKNLVKSEIADTGDKPYRCDISGKGFSRTGALQKHLRTHTGDKPYKCDICGKAFNQSSNLQNHLRTHTGDKPYKCDICGKAFNQSQNLQTHLRTHTGDKPYKCDICGKRFSLLQNLQTHLRTHTGDKPYKCDICGKGFSVSGSLQKHLRTHTGDKPYKCDICRKGFSQSGDLQKHLRTHTGDKPYRCVICGAAYCSSSALNNH 1566
++ +L E TG+KPY+C GK FS + L H R HT +KPYKCD CGK F+ S NL +H R HTG+KPYKC+ CGK F+ + + Q+H R HTG+KP++C++CGK FS Q H R HTG+KPYKC++CGK F+ S +L H R HTG+KPYKC+ C KGFSQ+ +LQ H HTG+KP++C C + +S L H
Sbjct: 413 TQRSHLQAHERIHTGEKPYKCGDCGKRFSCSSNLHTHQRVHTEEKPYKCDECGKCFSLSFNLHSHQRVHTGEKPYKCEECGKGFSSASSFQSHQRVHTGEKPFRCNVCGKGFSQSSYFQAHQRVHTGEKPYKCEVCGKRFNWSLNLHNHQRVHTGEKPYKCEECGKGFSQASNLQAHQSVHTGEKPFKCDACQKRFSQASHLQAH 617 HSP 10 Score: 218.394 bits (555), Expect = 2.354e-61 Identity = 101/179 (56.42%), Postives = 121/179 (67.60%), Query Frame = 1
Query: 964 NLVKSEIADTGDKPYRCDISGKGFSRTGALQKHLRTHTGDKPYKCDICGKAFNQSSNLQNHLRTHTGDKPYKCDICGKAFNQSQNLQTHLRTHTGDKPYKCDICGKRFSLLQNLQTHLRTHTGDKPYKCDICGKGFSVSGSLQKHLRTHTGDKPYKCDICRKGFSQSGDLQKHLRTHTG 1500
NL + TG+KPY+C+ GKGFS+ LQ H HTG+KP+KCD C K F+Q+S+LQ H R HTG+KPYKCD CGKAF+Q NLQ H HTG+KP+KC+ CGK FS L H R HTG+KPY C CGKGFS + H R HTG++PY CD+C KGFSQ L H R HTG
Sbjct: 557 NLHNHQRVHTGEKPYKCEECGKGFSQASNLQAHQSVHTGEKPFKCDACQKRFSQASHLQAHQRVHTGEKPYKCDTCGKAFSQRSNLQVHQIIHTGEKPFKCEECGKEFSWSAGLSAHQRVHTGEKPYTCQQCGKGFSQASHFHTHQRVHTGERPYICDVCCKGFSQRSHLIYHQRVHTG 735 HSP 11 Score: 198.364 bits (503), Expect = 1.794e-54 Identity = 109/247 (44.13%), Postives = 138/247 (55.87%), Query Frame = 1
Query: 910 KIKKVPSQSSPGVNIKKKNLVKSEIADTGDKPYRCDISGKGFSRTGALQKHLRTH----------------------------TGDKPYKCDICGKAFNQSSNLQNHLRTHTGDKPYKCDICGKAFNQSQNLQTHLRTHTGDKPYKCDICGKRFSLLQNLQTHLRTHTGDKPYKCDICGKGFSVSGSLQKHLRTHTGDKPYKCDICRKGFSQSGDLQKHLRTHTGDKPYRCVICGAAYCSSSALNNH 1566
K KV S S G + K + + TG K Y+ + + F+ + +L+ H + H TG K Y C CGK F+QSSNLQ H R HTG+KPY C CGK+FNQS +L HL HTG+KPY+CD CGK FS +L H R HTG+KPYKC++CGKGF+ LQ H R HTG+KPYKC C K FS S +L H R HT +KPY+C CG + S L++H
Sbjct: 231 KRDKVHSNSDCGKDTLKVSPLTQRSIHTGQKTYQGNECEEAFNDSSSLELHKQVHLGKKSPACSTHEKDTSYSSGIPVQQSVRTGKKRYWCHECGKGFSQSSNLQTHQRVHTGEKPYTCHECGKSFNQSSHLYAHLPIHTGEKPYRCDSCGKGFSRSTDLNIHCRVHTGEKPYKCEVCGKGFTQRSHLQAHERIHTGEKPYKCGDCGKRFSCSSNLHTHQRVHTEEKPYKCDECGKCFSLSFNLHSH 477 HSP 12 Score: 107.071 bits (266), Expect = 4.237e-24 Identity = 47/98 (47.96%), Postives = 64/98 (65.31%), Query Frame = 1
Query: 955 KKKNLVKSEIADTGDKPYRCDISGKGFSRTGALQKHLRTHTGDKPYKCDICGKAFNQSSNLQNHLRTHTGDKPYKCDICGKAFNQSQNLQTHLRTHTG 1248
++ NL +I TG+KP++C+ GK FS + L H R HTG+KPY C CGK F+Q+S+ H R HTG++PY CD+C K F+Q +L H R HTG
Sbjct: 638 QRSNLQVHQIIHTGEKPFKCEECGKEFSWSAGLSAHQRVHTGEKPYTCQQCGKGFSQASHFHTHQRVHTGERPYICDVCCKGFSQRSHLIYHQRVHTG 735 The following BLAST results are available for this feature:
BLAST of TCONS_00029881 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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