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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00029823 ID=TCONS_00029823|Name=TCONS_00029823|organism=Clytia hemisphaerica|type=transcript|length=5944bpRun BLAST on NCBI protein sequence of TCONS_00029823-protein >TCONS_00029823-protein ID=TCONS_00029823-protein|Name=TCONS_00029823-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1110bp MTQQPPFYNPGSIPPTMASKSSKRYYILLNDIVGFEKKKGRLLRTETLEQRun BLAST on NCBI transcript from alignment at sc0000771:100723..128631- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00029823 ID=TCONS_00029823|Name=TCONS_00029823|organism=Clytia hemisphaerica|type=transcript|length=27909bp|location=Sequence derived from alignment at sc0000771:100723..128631- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000771:100723..128631- >TCONS_00029823 ID=TCONS_00029823|Name=TCONS_00029823|organism=Clytia hemisphaerica|type=CDS|length=36663bp|location=Sequence derived from alignment at sc0000771:100723..128631- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00029823 vs. Swiss-Prot (Human)
Match: CYLD (Ubiquitin carboxyl-terminal hydrolase CYLD OS=Homo sapiens GN=CYLD PE=1 SV=1) HSP 1 Score: 303.138 bits (775), Expect = 7.238e-85 Identity = 193/519 (37.19%), Postives = 291/519 (56.07%), Query Frame = 3
Query: 1905 VAEEPPIE--------LTVEMMVEVSVNKKPYYGVVKWLGPSEVEGKMVDIVGLEMEEAYNFASTNGIFQGQKRFDCPSGNGFFTKAKKCKPDRRFQMEEEHPKQKKRVNKTQTPRPKEDVPLTGYSPPATELKQRK-HLGRMKGIQGHHNSCYMDSTLFAMFSFTDAFDAALLRERKDDVTEDYKPAQKILKEEIVNPLRQNGLVQSVSVMKLRKILNKHAGKLGGFMTEEKDPEELVVLLFEKVIPMEPLISIKTPN-AVNRSLLYQIFPPKPD-YDLPSVQXXXXXXXXXXXXXXNEIPPVMVLQMPRFGTQ-KMCERIFINPQLDLTNILYTSEKLCHVCNERASCMCKDCSGKPKPFGAENRNAFLCKHCMELSHRHPDRAHHKWNEIELCKEPIKYDKD-----SLTMELFAVVCINTSHYVSFVKCGDGDKEKWVFFDSMADREGGDSDGYNIPEVAELPDLKKHLKDVELVKGLKKEMHNKNNERL----LRFFEDASLCMYRSKEYLAYQ 3398
V E PP+ L V + EV N P+YGV++W+G + G + GLE+E+ T+G F+G + F C F K K C+PD RF + Q +R N +V + +PP E + + +G+ KGIQGH+NSCY+DSTLF +F+F+ D LLR ++ + E Y Q++L+ EIVNPLR G V + +MKLRKIL K GF +EEKDPEE + +LF ++ +EPL+ I++ V YQIF K + +P++Q LL S I+++L E P +++QMPRFG K+ ++IF + +L++T++L + + C +C A C++C P + + CK C H HP R +HK+N + L K+ +D MELFAV+CI TSHYV+FVK G D W+FFDSMADR+GG +G+NIP+V P++ ++LK + L +++H+ ++ R+ R DA +CMY+S Y+
Sbjct: 454 VQESPPLAMPPGNSHGLEVGSLAEVKENP-PFYGVIRWIG--QPPGLNEVLAGLELEDECA-GCTDGTFRGTRYFTCALKKALFVKLKSCRPDSRFASLQPVSNQIERCNSLAFGGYLSEV-VEENTPPKMEKEGLEIMIGKKKGIQGHYNSCYLDSTLFCLFAFSSVLDTVLLRPKEKNDVEYYSETQELLRTEIVNPLRIYGYVCATKIMKLRKILEKVEAA-SGFTSEEKDPEEFLNILFHHILRVEPLLKIRSAGQKVQDCYFYQIFMEKNEKVGVPTIQQLLEWSFINSNLKFAEAPSCLIIQMPRFGKDFKLFKKIFPSLELNITDLLEDTPRQCRICGGLAMYECRECYDDPDISAGKIKQ--FCKTCNTQVHLHPKRLNHKYNPVSLPKDLPDWDWRHGCIPCQNMELFAVLCIETSHYVAFVKYGK-DDSAWLFFDSMADRDGGQ-NGFNIPQVTPCPEVGEYLK-MSL-----EDLHSLDSRRIQGCARRLLCDAYMCMYQSPTMSLYK 956 The following BLAST results are available for this feature:
BLAST of TCONS_00029823 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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