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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00029819 ID=TCONS_00029819|Name=TCONS_00029819|organism=Clytia hemisphaerica|type=transcript|length=2804bp
CGtttgacaaaaaaagaattgaaaaagttgaatatttcCTTCTACAGAAC
GTTAGTTGTTCAACCTGAAGAATTGATGAAAGAAGAATTCATAAATAGTG
AATCACGatcttaaaaataaagttaaagaGACTGCGCAAAGACAAGCGAT
ATTCGCAAATGAACCAAACACTTTGCATGAAGTGACTGAAAGACTTTCCG
ACCTGGATTTCTTCACACCTATACAATATGAAAGGGAAACATGTTATGAG
CTTAATTTGACGGCACCGATTTACACCGAGGATTCGAAGCCGGATGAAAT
GGTAACAAAGCCAATACCAAGACCAAGACGAAGACCACATATCGCTTCTT
ATGATTTATTTGGAGAGAGAACATCTTATGAAGAAATCTCAGATATGCCA
ATATTGGATCCTGGTCTCATGCTTCCATGGTCAAGTTCGAGTGAAAGTGC
AACAAACCTACAGCCAATTGATTTTGACGAAGGGAACGACGCAATGTCAG
ACGGAAATGATTCCATGGTGGTGGAAGTTGACTATGACGATATATTCTCA
ATCAATGAGGTTCCTGCGGTTTGGAGTGACCAGTCTGACCATCATTCTAA
TGGATTCAACATTGCAACGAACGAGCCTTTCACACGAAATGAAACTATCA
TTGCCCCTCAAAAGGTAACTGCGAGTTGGAGTGACCAGCCTGACCATTAT
TCTGCAAATAGATTCAATATTGCATCGAACGAGCCTTTCACAAATGAAAC
TATCATTACTCCTCAAAAGGTCCCTGCGGTTTGGAGTGACCAGCCTGACC
ATTATTCTGCAAATAGATTCAATATTGCATCGAACGAGCCTTTCACAGAT
GAAACTATCATTACTCCTCAAAAGGTCCCTGCGGTTTGGAGTGTCCAGCC
TGACCATCATCATTCTGCAAATGGATTCAACATTACAACGAACGAGCCTT
TCACAAATGAAACTATCATTGCTCCTCAAAAGGTAACTGCGAGTTGGAGT
GACCAGCCTGACCATCATTCTGCAAATGGATTCAACATTACAACGAACGA
GCCTTTCACAAATGAAACTATCATTGCTTCTCAAAAGGTCCCTGCGGTTT
GGAGTGTCCAGCCTGACCACCATCATTCTGCAAATGGATTCAATATTGCA
TCGAACGAGCCTTTCACAAATGAAACTATCATTACTCCTCAAAAGGTCCC
TGCGGTTTGGAGTGTCCAGCCTGACCATCATCATTCTGCAAATGGATTCA
ACATTACAACGAACGAGCCTTTCACAAATGAAACTATCATTACTCCTCAA
AAGGTAACTACGAGTTGGAGTGACCAGCCTGACCATCATTCTGCAAATGG
ATTCAACATTACAACGAACGAGCCTTTCACAAATGAAACTATCATTGCTT
CTCAAAAGGTCCCTGCGGTTTGGAGTGTCCAGCCTGACCATCATCATTCT
GCAAATGGATTCAACATTACAACGAACGAGCCTTTCACAAATGAAACTAT
CATTACTCCTCAAAAGGTAACTGCGAGTTGGAGTGACCAGCCTGACCATC
ATTCTGCAAATGGATTCAATATTACAACGAACGAGCCTTTCACAAATGAA
ACTATCATTGCTCCTATCGATGCGAACCCTCaagaatcaaaaatgaaaaa
ggaagaTATGGTTTGTAAAAATGTGACAGGGCAGAATAGTGAAACAGAGG
ATGACTTATTAAAGAATTTCGAAAGTCATTACTCGTGTCCTATCTGCTTG
GACATTGCTGACGATGCAGTGGAGTGTACGGATTGCTTTAAGATTTATTG
CGGTGAATGTACACAAGGAATAAACACGTGTCCCAGCTGTCGCTGCACAC
CTTCTGCATGGCAACCAAGTCGTAATGCTCGACAATTCATTGGTAATTTA
AAAACCGATTGTCCTAATGATGGATGCAAGGAGAAGCCAACGCGGTCGAA
TCTGCAAGTTCATTTAGAGAAATGCGAATGGTCTTTGATTGCTTGCTCAA
GCGATGGTTGTGATAAGAGAATCAAGCAGAGTGGAATGGTGGAGCATTTG
CTTCAATGTGGTCATTGTTTGATAAAGTGTTCGTCTAAAGGTTGTTTAGA
ACTGGTCAAAAGGAAGGATGTGGAGGACCACAAGGATCGATGCTTATTTA
CCAATATCAATTGTATGAATTGCAACGAAATGTTAGTACGCAAAAATGAA
AGTATCCATTTGAATATTTGTAAAGAGAAGATAATCAATTGCATGTTTTG
TGGTTTTTCAGACACCAGAATGAATGTGATGGTACATTCGGTGCGTGTTC
ATTACGAGAAGGTTGCACACCCTTTCGGTGAGATGTTGGAATCTATCAGA
GTGCATCGATCGGTGTCGAATCATTATCCTTCGTATTTGCCGCCTTGAAA
ACGTCGTATGATAACGTATTTTaagtaaatttttgaaagatttattttga
aatttcaatctgGTCATTTCCAATCCAGTCTGTTTAATGGTGATTTACAA
AATAATTTGTCTTGGGATTTGTTCATTAAAtgaacagaaaaataaaaatg
ggggttggaaattgtaactacgaaaacccaaaaataaggtaaatataggc
taaaatcaggctatttagagcaaaataagggaccttctctttggAGTGTT
TAGGCACACTCATGGGTCCAAAGTGGCTATCATTTCCAAAGTTTTCTAGC
TAAAACGTGGAAGGAAGGAAGTATTTTGGAAAACGGAATATAATCAAATG
GCGAGGAATAGATTTTGGCTAAAATAAGTCACAGGAAACAAAGTTTGATA
GAGG Run BLAST on NCBI transcript from alignment at sc0000771:136511..140881+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00029819 ID=TCONS_00029819|Name=TCONS_00029819|organism=Clytia hemisphaerica|type=transcript|length=4371bp|location=Sequence derived from alignment at sc0000771:136511..140881+ (Clytia hemisphaerica)
CGtttgacaaaaaaagaattgaaaaagttgaatatttcCTTCTACAGAAC
GTTAGTTGTTCAACCTGAAGAATTGATGAAAGAAGAATTCATGTATGTGC
AAAAAAAGAAAGGTACTTTTTATTGACTCTTTTTTATTAGGTAAAAATCT
TTCTTATTAGTAGGTAAAAAAAGACAAGTGAATATTAGCCATCAAAAAAG
ACTTACACCATGCcatctcacagacccggtaggtttttttcagccagtag
gggttaacggactgaaacttgatggggattgatattcctgtattttttta
tggcttgggatttaaattctattgttttgaagTCAGAAAAGTCAGTGGGG
ATTGGGAAAGAGCATATTATTTTGCAGTATGGATCAGTttgtttaattat
tttcagtgggaacaGAAGTTTTAGTATAATTTTCAACTGGAGAAGATATt
tcggccaatttttccagtggaaaagggtcccagtgggtctgtgagaaggg
ggtgtacttTCCAATGCCAACTTCTCTCTTCGATTAACCAACCCCATCAA
ACAGAGATCTAGGCCNACTTTCCAATACCAACTTCTCTCTTCGATTACCT
AACCCCATCAAACAGAGATATAGGCCCTAGTAGGTGTTGATTATAACATT
ATGAGATCGTTCTTTTTGCTATGAGAAGACCTCTTTGTCCTAGGCTTAGG
TGAGGAGAGAGCTTCTTGTCGACTCTTCAGGATACTAAAGTTTTTTGTGT
ATCCATTTCTTTTTCATCGTTTATCACGTTTATATAACTATTGTATCTAT
GAACTTTCCCTTTTCAGAAATAGTGAATCACGatcttaaaaataaagtta
aagaGACTGCGCAAAGACAAGCGATATTCGCAAATGAACCAAACACTTTG
CATGAAGTGACTGAAAGACTTTCCGACCTGGATTTCTTCACACCTATACA
ATATGAAAGGGAAACATGTTATGAGCTTAATTTGACGGCACCGATTTACA
CCGAGGATTCGAAGCCGGATGAAATGGTAACAAAGCCAATACCAAGACCA
AGACGAAGACCACATATCGCTTCTTATGATTTATTTGGAGAGAGAACATC
TTATGAAGAAATCTCAGATATGCCAAGTAACGTGTTATCGAGCTGTTTGC
AATTTCCCTTTCTTACTTTCTTCCTTTCTTACATTTCTTCCCTCCAAGAT
ttattataagattttttttggaGTGAATTATTTATCCCAAGCCAAATTAT
TTCTGACATGACAAATTTAAtcattcaaaaaatcattaaaattaaaAGTA
CAATTATGAATCACTTGAttataaaacatatatttatcGGTTCAATCGGT
TTCTGAACGTTCCTGACTTGTGAAGGGCAAGTAGGATATTCACAATGCCC
AAATGTGATTTGTTACGGGGATTAGGTCATAATTTTCCAACTTGTTTAAA
GGGGTTATGACTAACTAACTCTCACTAAATGACTGTTTGTAGCTGATGGT
TTATCCCATTGAATGATTTGAgttaatcttgatttttttccttgGGATAA
AAGATGATTCAAActtgattttcagaaaattggatGATGTATTAAAAATA
TGTATGTTATGTATGCTGTGTGATATTCTATTTTATTCTATTTCTAGTAT
TGGATCCTGGTCTCATGCTTCCATGGTCAAGTTCGAGTGAAAGTGCAACA
AACCTACAGCCAATTGATTTTGACGAAGGGAACGACGCAATGTCAGACGG
AAATGATTCCATGGTGGTGGAAGTTGACTATGACGATATATTCTCAATCA
ATGAGGTTCCTGCGGTTTGGAGTGACCAGTCTGACCATCATTCTAATGGA
TTCAACATTGCAACGAACGAGCCTTTCACACGAAATGAAACTATCATTGC
CCCTCAAAAGGTAACTGCGAGTTGGAGTGACCAGCCTGACCATTATTCTG
CAAATAGATTCAATATTGCATCGAACGAGCCTTTCACAAATGAAACTATC
ATTACTCCTCAAAAGGTCCCTGCGGTTTGGAGTGACCAGCCTGACCATTA
TTCTGCAAATAGATTCAATATTGCATCGAACGAGCCTTTCACAGATGAAA
CTATCATTACTCCTCAAAAGGTCCCTGCGGTTTGGAGTGTCCAGCCTGAC
CATCATCATTCTGCAAATGGATTCAACATTACAACGAACGAGCCTTTCAC
AAATGAAACTATCATTGCTCCTCAAAAGGTAACTGCGAGTTGGAGTGACC
AGCCTGACCATCATTCTGCAAATGGATTCAACATTACAACGAACGAGCCT
TTCACAAATGAAACTATCATTGCTTCTCAAAAGGTCCCTGCGGTTTGGAG
TGTCCAGCCTGACCACCATCATTCTGCAAATGGATTCAATATTGCATCGA
ACGAGCCTTTCACAAATGAAACTATCATTACTCCTCAAAAGGTCCCTGCG
GTTTGGAGTGTCCAGCCTGACCATCATCATTCTGCAAATGGATTCAACAT
TACAACGAACGAGCCTTTCACAAATGAAACTATCATTACTCCTCAAAAGG
TAACTACGAGTTGGAGTGACCAGCCTGACCATCATTCTGCAAATGGATTC
AACATTACAACGAACGAGCCTTTCACAAATGAAACTATCATTGCTTCTCA
AAAGGTCCCTGCGGTTTGGAGTGTCCAGCCTGACCATCATCATTCTGCAA
ATGGATTCAACATTACAACGAACGAGCCTTTCACAAATGAAACTATCATT
ACTCCTCAAAAGGTAACTGCGAGTTGGAGTGACCAGCCTGACCATCATTC
TGCAAATGGATTCAATATTACAACGAACGAGCCTTTCACAAATGAAACTA
TCATTGCTCCTATCGATGCGAACCCTCaagaatcaaaaatgaaaaaggaa
gaTATGGTTTGTAAAAATGTGACAGGGCAGAATAGTGGTAAGATTTCTTT
GTCAGGAAACTGGTTTTaagttttcataaaaatttttatttttataacat
ATTCATAAATTTCGATCAAAATACGTCGGTTTGCATTCAAGAAAATAAAC
GACTCAAACGGAAAAAGCCATTTCAGCGAAAAcaaaatgttatcaaaatt
ttgttaaattgtCAAAAGCTTCTCCTACGGCGCCCTAAAAATTCAATCGA
GAGTAATTTCCTTATCTGTTTGTCAGTTTATTGTTTCTTTTGCTCGAAAA
GTATTTTCCCTACAATACTCGCTTTAGAATTTCTTTTATCTCTTATTTTC
ACCCTTAGAAACAGAGGATGACTTATTAAAGAATTTCGAAAGTCATTACT
CGTGTCCTATCTGCTTGGACATTGCTGACGATGCAGTGGAGTGTACGGAT
TGCTTTAAGATTTATTGCGGTGAATGTACACAAGGAATAAACACGTGTCC
CAGCTGTCGCTGCACACCTTCTGCATGGCAACCAAGTCGTAATGCTCGAC
AATTCATTGGTAATTTAAAAACCGATTGTCCTAATGATGGATGCAAGGAG
AAGCCAACGCGGTCGAATCTGCAAGTTCATTTAGAGAAATGCGAATGGTC
TTTGATTGCTTGCTCAAGCGATGGTTGTGATAAGAGAATCAAGCAGAGTG
GAATGGTGGAGCATTTGCTTCAATGTGGTCATTGTTTGATAAAGTGTTCG
TCTAAAGGTTGTTTAGAACTGGTCAAAAGGAAGGATGTGGAGGACCACAA
GGATCGATGCTTATTTACCAATATCAATTGTATGAATTGCAACGAAATGT
TAGTACGCAAAAATGAAAGTATCCATTTGAATATTTGTAAAGAGAAGATA
ATCAATTGCATGTTTTGTGGTTTTTCAGACACCAGAATGAATGTGATGGT
ACATTCGGTGCGTGTTCATTACGAGAAGGTTGCACACCCTTTCGGTGAGA
TGTTGGAATCTATCAGAGTGCATCGATCGGTGTCGAATCATTATCCTTCG
TATTTGCCGCCTTGAAAACGTCGTATGATAACGTATTTTaagtaaatttt
tgaaagatttattttgaaatttcaatctgGTCATTTCCAATCCAGTCTGT
TTAATGGTGATTTACAAAATAATTTGTCTTGGGATTTGTTCATTAAAtga
acagaaaaataaaaatgggggttggaaattgtaactacgaaaacccaaaa
ataaggtaaatataggctaaaatcaggctatttagagcaaaataagggac
cttctctttggAGTGTTTAGGCACACTCATGGGTCCAAAGTGGCTATCAT
TTCCAAAGTTTTCTAGCTAAAACGTGGAAGGAAGGAAGTATTTTGGAAAA
CGGAATATAATCAAATGGCGAGGAATAGATTTTGGCTAAAATAAGTCACA
GGAAACAAAGTTTGATAGAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00029819-exon-sc0000771-1491911889:136511..136602 | TCONS_00029819-exon-sc0000771-1491911889:136511..136602 | Clytia hemisphaerica | exon |
| TCONS_00029819-exon-sc0000771-1510915933:136511..136602 | TCONS_00029819-exon-sc0000771-1510915933:136511..136602 | Clytia hemisphaerica | exon |
| TCONS_00029819-exon-sc0000771-1575043694:136511..136602 | TCONS_00029819-exon-sc0000771-1575043694:136511..136602 | Clytia hemisphaerica | exon |
| TCONS_00029819-exon-sc0000771-1491911889:137328..137636 | TCONS_00029819-exon-sc0000771-1491911889:137328..137636 | Clytia hemisphaerica | exon |
| TCONS_00029819-exon-sc0000771-1510915933:137328..137636 | TCONS_00029819-exon-sc0000771-1510915933:137328..137636 | Clytia hemisphaerica | exon |
| TCONS_00029819-exon-sc0000771-1575043694:137328..137636 | TCONS_00029819-exon-sc0000771-1575043694:137328..137636 | Clytia hemisphaerica | exon |
| TCONS_00029819-exon-sc0000771-1491911889:138158..139447 | TCONS_00029819-exon-sc0000771-1491911889:138158..139447 | Clytia hemisphaerica | exon |
| TCONS_00029819-exon-sc0000771-1510915933:138158..139447 | TCONS_00029819-exon-sc0000771-1510915933:138158..139447 | Clytia hemisphaerica | exon |
| TCONS_00029819-exon-sc0000771-1575043694:138158..139447 | TCONS_00029819-exon-sc0000771-1575043694:138158..139447 | Clytia hemisphaerica | exon |
| TCONS_00029819-exon-sc0000771-1491911889:139769..140881 | TCONS_00029819-exon-sc0000771-1491911889:139769..140881 | Clytia hemisphaerica | exon |
| TCONS_00029819-exon-sc0000771-1510915933:139769..140881 | TCONS_00029819-exon-sc0000771-1510915933:139769..140881 | Clytia hemisphaerica | exon |
| TCONS_00029819-exon-sc0000771-1575043694:139769..140881 | TCONS_00029819-exon-sc0000771-1575043694:139769..140881 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000771 | supercontig | sc0000771:136511..140881 + |
Blast
The following BLAST results are available for this feature:
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