TCONS_00029809 (transcript) - C. hemisphaerica

Overview
NameTCONS_00029809
Unique NameTCONS_00029809
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length477

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00029809 ID=TCONS_00029809|Name=TCONS_00029809|organism=Clytia hemisphaerica|type=transcript|length=477bp
TATTGCATGTCAGGTGGTAGGGGAGCTTTGTCTTCACTTTTGTTTTACAC
CATTTCCATTCATCAGTAGCAGTATGATTGCTAGTAAACTGTTTTTACCA
ACAAATGACACTATCTGTTAAGACTTGACCCCCGACTTGAAGAACTTGAC
GATGATGAAGATGTGGAGGATAGAGATGATGAATTACCacttgaaatttt
ggattttgacATGACAAGGCTTTTGTTTAATGATGAggatgaagatgatg
atgatgatttcttGGTTAGGACTATGGTTGATTTGGGATTGCTTTTACTT
TCGGATTGCATAAGGCTGCGGCTACCGTTTAAACTTGATAAAGTCATGTT
Cgttgatgttgttgttgttgttgttggtgttggtgttgttgttgttgttg
ttgttgttgttgttgttgttgttgttgttgttgtttttttatgttGTCTT
ATTGAGTCGTTGTTGCTGTTCTGTGAG
Run BLAST on NCBI

transcript from alignment at sc0000771:40026..40533+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00029809 ID=TCONS_00029809|Name=TCONS_00029809|organism=Clytia hemisphaerica|type=transcript|length=508bp|location=Sequence derived from alignment at sc0000771:40026..40533+ (Clytia hemisphaerica)
TATTGCATGTCAGGTGGTAGGGGAGCTTTGTCTTCACTTTTGTTTTACAC
CATTTCCATTCATCAGATTGCGAGTAAACACCATTTCCATTCATCACTAG
CAGTATGATTGCTAGTAAACTGTTTTTACCAACAAATGACACTATCTGTT
AAGACTTGACCCCCGACTTGAAGAACTTGACGATGATGAAGATGTGGAGG
ATAGAGATGATGAATTACCacttgaaattttggattttgacATGACAAGG
CTTTTGTTTAATGATGAggatgaagatgatgatgatgatttcttGGTTAG
GACTATGGTTGATTTGGGATTGCTTTTACTTTCGGATTGCATAAGGCTGC
GGCTACCGTTTAAACTTGATAAAGTCATGTTCgttgatgttgttgttgtt
gttgttggtgttggtgttgttgttgttgttgttgttgttgttgttgttgt
tgttgttgttgttgtttttttatgttGTCTTATTGAGTCGTTGTTGCTGT
TCTGTGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_017035XLOC_017035Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00029809-exon-sc0000771-1491911889:40026..40091TCONS_00029809-exon-sc0000771-1491911889:40026..40091Clytia hemisphaericaexon
TCONS_00029809-exon-sc0000771-1510915933:40026..40091TCONS_00029809-exon-sc0000771-1510915933:40026..40091Clytia hemisphaericaexon
TCONS_00029809-exon-sc0000771-1575043694:40026..40091TCONS_00029809-exon-sc0000771-1575043694:40026..40091Clytia hemisphaericaexon
TCONS_00029809-exon-sc0000771-1491911889:40123..40533TCONS_00029809-exon-sc0000771-1491911889:40123..40533Clytia hemisphaericaexon
TCONS_00029809-exon-sc0000771-1510915933:40123..40533TCONS_00029809-exon-sc0000771-1510915933:40123..40533Clytia hemisphaericaexon
TCONS_00029809-exon-sc0000771-1575043694:40123..40533TCONS_00029809-exon-sc0000771-1575043694:40123..40533Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000771supercontigsc0000771:40026..40533 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.468605	0.437176	0.163757	0.334107	0.714085	0.151466	0.170195	0.637703	1.06318	1.691	1.37436	1.05797	0.880833	1.52105	2.09613	1.68219	0.827164	1.12044	1.40372	2.50573	0	0.190201	0.157043	0.714956	0.14213	0.634239	0.732275	0.258909	0.783435	0.16753
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00029809 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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